RchiOBHm_Chr0c17g0499961

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0000224
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 348 bp
ATGTTGGCCAATGAAATTGGTTTCACAGTTCGAAACCATGCCCCACTAAATGTGGAAAAATGGAAGAAGATTCCGAAAATTGACGTGGATAAGTTGGTTAAAAGAATAACGAACAAGTTTGACATTGACATGTCTCTCCTTTGGGTCGAGAGATATGTAATTACAACATGTCAGACTGTATTTTGTAATTTTCGTTATAAGTTGAAGAAACATTTTGAGAAATTTTCAACAATCGAGGAAGCAATTGAAAACAAACACGATGATGTCAAGACTCAGGAAGAATGGGAGTTTCTCTGTGCTCGTTTTTCTAGTGAGAAGTTTCAGGTACAATATTGTTTATTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

115

Amino Acids

13.95

Weight (kDa)

8.33

Isoelectric Point (pI)

32.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 198
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 221
AfaI GTAC 1 cut(s) 327
AflIII ACRYGT 2 cut(s) 129, 167
AgsI TTSAA 3 cut(s) 205, 228, 248
AjiI CACGTC 1 cut(s) 85
Alw21I GWGCWC 1 cut(s) 301
Alw26I GTCTC 1 cut(s) 138
AoxI GGCC 1 cut(s) 6
ApoI RAATTY 1 cut(s) 221
AsuII TTCGAA 1 cut(s) 31
BalI TGGCCA 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 1 cut(s) 309
BmgBI CACGTC 1 cut(s) 85
Bpu14I TTCGAA 1 cut(s) 31
BseMII CTCAG 1 cut(s) 287
BshFI GGCC 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 138
BsnI GGCC 1 cut(s) 8
Bsp119I TTCGAA 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 301
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 286
BspT104I TTCGAA 1 cut(s) 31
Bst4CI ACNGT 2 cut(s) 28, 178
BstBI TTCGAA 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 273
BstMAI GTCTC 1 cut(s) 138
BstNSI RCATGY 2 cut(s) 133, 171
BsuRI GGCC 1 cut(s) 8
BtrI CACGTC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 326
CviAII CATG 3 cut(s) 38, 130, 168
CviJI RGCY 1 cut(s) 8
CviKI_1 RGCY 1 cut(s) 8
CviQI GTAC 1 cut(s) 326
DdeI CTNAG 1 cut(s) 273
EaeI YGGCCR 1 cut(s) 6
FaeI CATG 3 cut(s) 41, 133, 171
FaiI YATR 5 cut(s) 39, 131, 156, 169, 198
FatI CATG 3 cut(s) 37, 129, 167
FspBI CTAG 1 cut(s) 309
HaeIII GGCC 1 cut(s) 8
Hin1II CATG 3 cut(s) 41, 133, 171
HinfI GANTC 2 cut(s) 70, 271
Hpy188I TCNGA 2 cut(s) 75, 174
Hpy188III TCNNGA 3 cut(s) 148, 268, 275
HpyCH4III ACNGT 2 cut(s) 28, 178
HpyCH4IV ACGT 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 3 cut(s) 41, 133, 171
LpnPI CCDG 2 cut(s) 260, 308
MaeI CTAG 1 cut(s) 309
MaeII ACGT 1 cut(s) 84
MboII GAAGA 4 cut(s) 76, 79, 217, 290
MfeI CAATTG 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 301
MlsI TGGCCA 1 cut(s) 8
MluCI AATT 6 cut(s) 15, 78, 159, 187, 221, 243
MluNI TGGCCA 1 cut(s) 8
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 1 cut(s) 229
Mox20I TGGCCA 1 cut(s) 8
MscI TGGCCA 1 cut(s) 8
MseI TTAA 2 cut(s) 99, 346
MslI CAYNNNNRTG 2 cut(s) 128, 261
Msp20I TGGCCA 1 cut(s) 8
MunI CAATTG 1 cut(s) 243
NlaIII CATG 3 cut(s) 41, 133, 171
NspI RCATGY 2 cut(s) 133, 171
NspV TTCGAA 1 cut(s) 31
PciI ACATGT 2 cut(s) 129, 167
PfeI GAWTC 1 cut(s) 70
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PscI ACATGT 2 cut(s) 129, 167
PsiI TTATAA 1 cut(s) 198
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
RseI CAYNNNNRTG 2 cut(s) 128, 261
SaqAI TTAA 2 cut(s) 99, 346
SchI GAGTC 1 cut(s) 265
SduI GDGCHC 1 cut(s) 301
SetI ASST 2 cut(s) 87, 327
SfuI TTCGAA 1 cut(s) 31
SmiMI CAYNNNNRTG 2 cut(s) 128, 261
Sse9I AATT 6 cut(s) 15, 78, 159, 187, 221, 243
SspI AATATT 1 cut(s) 332
SspMI CTAG 1 cut(s) 309
TaaI ACNGT 2 cut(s) 28, 178
TaiI ACGT 1 cut(s) 87
TaqI TCGA 3 cut(s) 31, 147, 234
TasI AATT 6 cut(s) 15, 78, 159, 187, 221, 243
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 2 cut(s) 99, 346
Tru9I TTAA 2 cut(s) 99, 346
TspDTI ATGAA 1 cut(s) 27
XapI RAATTY 1 cut(s) 221
XceI RCATGY 2 cut(s) 133, 171
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.