RLG00000035648

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000480
Physical Location & Seq
Reverse (-)
69810959 .. 69814873
3915 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035648

Sequence Viewer

Length: 1899 bp
ATGTCTTGTAGCCAGTCTCTCTCTATGGCGTTGCTCCGCCGCGCCACACCGTGCTTATCTTTTGGCGCTGAAGCTTTCGGCGTCGATCACTGCGAGTATTGGTTTGGATTGCGATTCGGGTCGCCATTGATTCGGGTTCACTTTCGGTACGGCTATGCGGGTCGGTCGAATCTCAGTCTCTTCGTCCTCGTAAGTTGTTCTAATTTTCCCACTTCCTCTGCTTGCTTGCTTCTTCCGAGAGCCACTATTGTTAACCAATTCTGGATTTTTGTCCTCCTCCAGATGAGTGAAAGTAAACGTGAACTTTGGAAACCAAGAAAAAGAGAAATTGGGCGAGTCAAAGCAGCTTGTGCCTGTCCTCTTGATGTGCTAATTTCTAAACTATCAAGAGATGTGAACCTGATCACCGGAACTGGCATTCGAAATGTTGCATTGGTACTCTCCCCCAGTCACCTAAAGTACATTAGATTTCCTCTTCATCCTTTAATTCACGTCATCTTGAATGCTTTGGATTTACATCCGATGCAATTAAGTCCGAATAGCTACCTTCAGCTTTCAGCATTTCTAGGCTTTGGTCTTCAGGTGGGAGTCAGCATTAATTCTTCCGACTTCTTTCACTTTCATGACTGTGTGCTTATTCGAGAGGAAGTAGGTTATTTTCATTTTGCTTCAAAGTCCAATTGCAGGTCTTTTGTTAACAAACCCTCTTCACTCCAAAAATGGAAAGATCTTGTAACTGGGAATTGGGCAGCTCCGGAGCTCAACTTCCTCAAGATTCGTTCCACCTTCGCAGCCTCTGCTGAGCTTCCGGACATGCTTCTTTCTCCATCTTCAAAACCGTCAAAGCTAAAGATGCAACCAGGATCCTCTTGTGCCTTAGGGCTTGAGAAATGTTTGAAGACAGTTCAGTATCAGTTTTGCCACTCTTCCGGGCCGTGCTTGGAGCCTACACACCCTCCTCAGAAGTCACCCTTGAACAAAGCTGCATTGGAGCCTGGTCTTACTACAGATCTTGTTTCCGGGCACTCTTCAAATTCATTCAAGAAGGATGATGGTGCAGAGACTGGCAAAGCAGTCCATTTGTTTAAAGACCCTGACAGACTTGATCTCAACCAAGTTGAACCTACCCCGTTAGTAGGGAACCCTGAGGCTTGTTTGGCTGTTTGGCAAGGTTTATTTCACCCTGCTGATGCTTTTGCCTTCCAAAAAGCGGCTCCTAAAGAAATCATGAAGGCTATGAATTCCCGTTTTATTGAGTTCGGACAAATGGCCATGGCAATTCAAAATACGTTGACTCGGACTAGGCAAACTGAGAAGCTTCTCACTCAGTTGAATGAGAGCAAAGACAAGCAATTAGAAGAGCTTAAGCTTGACCAGGAGCTTGAGAGTGTCTGGTTTGGATTACAGCTTGCTTGGAATGTTGGCTACGGAGACATTGAAGTTGAAACTAATCCAAATTTGGCAGTGGATGTAACAGCCCTTTCATTTGATGATTCAACTTTAAGTGAGACACAGTTGGATAAACGCCATTCTTTAGTCTGTAAAATCAAGGATTTTAAATTCACTAAAAGTCTCATAACTCGTGAGCAGAACAAGGTTGCTGATCACCTTGCTAGTTTGGGAGAAGATCTGCCAGTAGGAGAAGTCAAGGTGTTTGATTCTCCTCCGGCTACCTGCATGGAGCTGCTTGGTCTCGATGCAGCGCCTGCCCAGCCCAACGAGCAAAAGAACTCATATCCTGGCTTTTTAGAGTATCTCCAACATGGAGAAATTCTATATAACATAGTGGGAAAGGAATTAGGGCTGGGAGTTCATGGTTCTAGCATTTGTTCAAGTTCTAATTCAGACACCTTACTGTTGGAAGTAACTACTAAATTTGTTCAGGTTGTGTTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 zf-RVT

Protein Analysis

633

Amino Acids

70.05

Weight (kDa)

7.24

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 460 - 539 8.7e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 675, 1682
AccII CGCG 1 cut(s) 42
AccIII TCCGGA 2 cut(s) 754, 808
AciI CCGC 4 cut(s) 37, 40, 158, 1211
AclWI GGATC 2 cut(s) 858, 871
AcoI YGGCCR 1 cut(s) 1269
AcsI RAATTY 6 cut(s) 1033, 1240, 1456, 1559, 1770, 1874
AcuI CTGAAG 3 cut(s) 90, 533, 563
AcyI GRCGYC 1 cut(s) 81
AdeI CACNNNGTG 1 cut(s) 51
AfaI GTAC 3 cut(s) 149, 438, 461
AfiI CCNNNNNNNGG 3 cut(s) 684, 1136, 1210
AflII CTTAAG 1 cut(s) 1364
AjiI CACGTC 1 cut(s) 493
AjnI CCWGG 4 cut(s) 859, 994, 1374, 1738
Alw21I GWGCWC 1 cut(s) 762
Alw26I GTCTC 7 cut(s) 21, 182, 1055, 1425, 1502, 1577, 1697
AlwI GGATC 2 cut(s) 858, 871
AlwNI CAGNNNCTG 3 cut(s) 797, 1064, 1706
Aor13HI TCCGGA 2 cut(s) 754, 808
AoxI GGCC 2 cut(s) 932, 1269
ApeKI GCWGC 6 cut(s) 344, 749, 791, 983, 1684, 1700
ApoI RAATTY 6 cut(s) 1033, 1240, 1456, 1559, 1770, 1874
AseI ATTAAT 1 cut(s) 597
AspLEI GCGC 3 cut(s) 44, 68, 1705
AspS9I GGNCC 1 cut(s) 932
AsuC2I CCSGG 2 cut(s) 931, 1021
AsuHPI GGTGA 5 cut(s) 397, 443, 960, 1172, 1598
AsuII TTCGAA 1 cut(s) 421
AxyI CCTNAGG 2 cut(s) 877, 1146
BaeGI GKGCMC 1 cut(s) 1026
BalI TGGCCA 1 cut(s) 1271
BamHI GGATCC 1 cut(s) 863
BanII GRGCYC 1 cut(s) 762
BauI CACGAG 1 cut(s) 1581
BbsI GAAGAC 2 cut(s) 569, 905
Bbv12I GWGCWC 1 cut(s) 762
BbvI GCAGC 6 cut(s) 356, 761, 803, 970, 1671, 1712
BccI CCATC 2 cut(s) 835, 1046
BceAI ACGGC 2 cut(s) 166, 919
BciT130I CCWGG 4 cut(s) 861, 996, 1376, 1740
BclI TGATCA 2 cut(s) 402, 1603
BcnI CCSGG 2 cut(s) 931, 1021
BcoDI GTCTC 7 cut(s) 21, 182, 1055, 1425, 1502, 1577, 1697
BfaI CTAG 4 cut(s) 566, 1302, 1614, 1821
BfmI CTRYAG 1 cut(s) 1005
BfoI RGCGCY 2 cut(s) 69, 1706
BfrI CTTAAG 1 cut(s) 1364
BfuAI ACCTGC 2 cut(s) 675, 1682
BglII AGATCT 3 cut(s) 727, 1009, 1627
BisI GCNGC 8 cut(s) 40, 345, 750, 792, 984, 1212, 1685, 1701
BlpI GCTNAGC 1 cut(s) 801
BlsI GCNGC 8 cut(s) 41, 346, 751, 793, 985, 1213, 1686, 1702
Bme1390I CCNGG 6 cut(s) 861, 931, 996, 1021, 1376, 1740
BmgBI CACGTC 1 cut(s) 493
BmgT120I GGNCC 1 cut(s) 932
BmiI GGNNCC 5 cut(s) 865, 945, 993, 1142, 1215
BmrFI CCNGG 6 cut(s) 861, 931, 996, 1021, 1376, 1740
BmrI ACTGGG 2 cut(s) 441, 747
BmsI GCATC 4 cut(s) 513, 843, 1180, 1687
BmuI ACTGGG 2 cut(s) 441, 747
BpiI GAAGAC 2 cut(s) 569, 905
BpmI CTGGAG 1 cut(s) 263
Bpu1102I GCTNAGC 1 cut(s) 801
Bpu14I TTCGAA 1 cut(s) 421
BpuEI CTTGAG 3 cut(s) 755, 905, 1403
BpuMI CCSGG 2 cut(s) 931, 1021
BsaBI GATNNNNATC 1 cut(s) 516
BsaHI GRCGYC 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 1697
BsaJI CCNNGG 1 cut(s) 1272
BsaWI WCCGGW 3 cut(s) 407, 754, 808
BsaXI ACNNNNNCTCC 2 cut(s) 940, 970
Bsc4I CCNNNNNNNGG 3 cut(s) 684, 1136, 1210
Bse1I ACTGG 6 cut(s) 13, 418, 447, 742, 1069, 1634
Bse21I CCTNAGG 2 cut(s) 877, 1146
Bse8I GATNNNNATC 1 cut(s) 516
BseAI TCCGGA 2 cut(s) 754, 808
BseBI CCWGG 4 cut(s) 861, 996, 1376, 1740
BseDI CCNNGG 1 cut(s) 1272
BseGI GGATG 4 cut(s) 478, 517, 1054, 1474
BseJI GATNNNNATC 1 cut(s) 516
BseLI CCNNNNNNNGG 3 cut(s) 684, 1136, 1210
BseMII CTCAG 6 cut(s) 187, 792, 974, 1137, 1302, 1340
BseNI ACTGG 6 cut(s) 13, 418, 447, 742, 1069, 1634
BseRI GAGGAG 3 cut(s) 266, 948, 1653
BseSI GKGCMC 1 cut(s) 1026
BseXI GCAGC 6 cut(s) 356, 761, 803, 970, 1671, 1712
BseYI CCCAGC 2 cut(s) 1710, 1804
BsgI GTGCAG 1 cut(s) 1077
Bsh1236I CGCG 1 cut(s) 42
Bsh1285I CGRYCG 1 cut(s) 167
BshFI GGCC 2 cut(s) 934, 1271
BsiEI CGRYCG 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 762
BsiSI CCGG 6 cut(s) 408, 755, 809, 930, 1020, 1667
BslI CCNNNNNNNGG 3 cut(s) 684, 1136, 1210
BsmAI GTCTC 7 cut(s) 21, 182, 1055, 1425, 1502, 1577, 1697
BsmI GAATGC 2 cut(s) 417, 508
BsnI GGCC 2 cut(s) 934, 1271
Bso31I GGTCTC 1 cut(s) 1697
Bsp119I TTCGAA 1 cut(s) 421
Bsp1286I GDGCHC 2 cut(s) 762, 1026
Bsp13I TCCGGA 2 cut(s) 754, 808
Bsp143I GATC 8 cut(s) 85, 402, 727, 863, 1009, 1105, 1603, 1627
Bsp1720I GCTNAGC 1 cut(s) 801
Bsp19I CCATGG 1 cut(s) 1272
BspACI CCGC 4 cut(s) 37, 40, 158, 1211
BspANI GGCC 2 cut(s) 934, 1271
BspCNI CTCAG 6 cut(s) 186, 793, 973, 1138, 1303, 1339
BspEI TCCGGA 2 cut(s) 754, 808
BspFNI CGCG 1 cut(s) 42
BspHI TCATGA 2 cut(s) 622, 1227
BspLI GGNNCC 5 cut(s) 865, 945, 993, 1142, 1215
BspMI ACCTGC 2 cut(s) 675, 1682
BspPI GGATC 2 cut(s) 858, 871
BspQI GCTCTTC 1 cut(s) 1353
BspT104I TTCGAA 1 cut(s) 421
BspTI CTTAAG 1 cut(s) 1364
BspTNI GGTCTC 1 cut(s) 1697
BsrI ACTGG 6 cut(s) 13, 418, 447, 742, 1069, 1634
BssECI CCNNGG 1 cut(s) 1272
BssMI GATC 8 cut(s) 85, 402, 727, 863, 1009, 1105, 1603, 1627
BssNI GRCGYC 1 cut(s) 81
BssSI CACGAG 1 cut(s) 1581
BssT1I CCWWGG 1 cut(s) 1272
Bst2BI CACGAG 1 cut(s) 1581
Bst2UI CCWGG 4 cut(s) 861, 996, 1376, 1740
Bst4CI ACNGT 6 cut(s) 51, 629, 840, 904, 1515, 1857
Bst6I CTCTTC 6 cut(s) 185, 480, 712, 931, 1033, 1353
BstACI GRCGYC 1 cut(s) 81
BstAFI CTTAAG 1 cut(s) 1364
BstAPI GCANNNNNTGC 3 cut(s) 350, 797, 1706
BstBI TTCGAA 1 cut(s) 421
BstC8I GCNNGC 4 cut(s) 223, 227, 1410, 1707
BstDEI CTNAG 7 cut(s) 173, 801, 877, 960, 1146, 1311, 1326
BstDSI CCRYGG 1 cut(s) 1272
BstF5I GGATG 4 cut(s) 478, 517, 1054, 1474
BstFNI CGCG 1 cut(s) 42
BstH2I RGCGCY 2 cut(s) 69, 1706
BstHHI GCGC 3 cut(s) 44, 68, 1705
BstKTI GATC 8 cut(s) 88, 405, 730, 866, 1012, 1108, 1606, 1630
BstMAI GTCTC 7 cut(s) 21, 182, 1055, 1425, 1502, 1577, 1697
BstMBI GATC 8 cut(s) 85, 402, 727, 863, 1009, 1105, 1603, 1627
BstMCI CGRYCG 1 cut(s) 167
BstMWI GCNNNNNNNGC 7 cut(s) 350, 797, 853, 1157, 1706, 1711, 1720
BstNI CCWGG 4 cut(s) 861, 996, 1376, 1740
BstNSI RCATGY 1 cut(s) 817
BstSCI CCNGG 6 cut(s) 859, 929, 994, 1019, 1374, 1738
BstSFI CTRYAG 1 cut(s) 1005
BstSLI GKGCMC 1 cut(s) 1026
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 6 cut(s) 356, 761, 803, 970, 1671, 1712
BstV2I GAAGAC 2 cut(s) 569, 905
BstX2I RGATCY 4 cut(s) 727, 863, 1009, 1627
BstYI RGATCY 4 cut(s) 727, 863, 1009, 1627
Bsu36I CCTNAGG 2 cut(s) 877, 1146
BsuRI GGCC 2 cut(s) 934, 1271
BtgI CCRYGG 1 cut(s) 1272
BtrI CACGTC 1 cut(s) 493
BtsCI GGATG 4 cut(s) 478, 517, 1054, 1474
BtsI GCAGTG 2 cut(s) 88, 1470
BtsIMutI CAGTG 2 cut(s) 88, 1470
BveI ACCTGC 2 cut(s) 675, 1682
Cac8I GCNNGC 4 cut(s) 223, 227, 1410, 1707
CaiI CAGNNNCTG 3 cut(s) 797, 1064, 1706
CciI TCATGA 2 cut(s) 622, 1227
CfoI GCGC 3 cut(s) 44, 68, 1705
Cfr13I GGNCC 1 cut(s) 932
CseI GACGC 1 cut(s) 70
Csp6I GTAC 3 cut(s) 148, 437, 460
CviAII CATG 7 cut(s) 623, 814, 1228, 1273, 1678, 1763, 1814
CviQI GTAC 3 cut(s) 148, 437, 460
DdeI CTNAG 7 cut(s) 173, 801, 877, 960, 1146, 1311, 1326
DpnI GATC 8 cut(s) 87, 404, 729, 865, 1011, 1107, 1605, 1629
DpnII GATC 8 cut(s) 85, 402, 727, 863, 1009, 1105, 1603, 1627
DraI TTTAAA 2 cut(s) 1087, 1558
DraIII CACNNNGTG 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 1269
Eam1104I CTCTTC 6 cut(s) 185, 480, 712, 931, 1033, 1353
EarI CTCTTC 6 cut(s) 185, 480, 712, 931, 1033, 1353
EciI GGCGGA 1 cut(s) 26
Ecl136II GAGCTC 1 cut(s) 760
Eco130I CCWWGG 1 cut(s) 1272
Eco24I GRGCYC 1 cut(s) 762
Eco31I GGTCTC 1 cut(s) 1697
Eco53kI GAGCTC 1 cut(s) 760
Eco57I CTGAAG 3 cut(s) 90, 533, 563
Eco81I CCTNAGG 2 cut(s) 877, 1146
EcoICRI GAGCTC 1 cut(s) 760
EcoRI GAATTC 1 cut(s) 1240
EcoRII CCWGG 4 cut(s) 859, 994, 1374, 1738
EcoT14I CCWWGG 1 cut(s) 1272
EcoT38I GRGCYC 1 cut(s) 762
ErhI CCWWGG 1 cut(s) 1272
FaeI CATG 7 cut(s) 626, 817, 1231, 1276, 1681, 1766, 1817
FalI AAGNNNNNCTT 2 cut(s) 956, 988
FatI CATG 7 cut(s) 622, 813, 1227, 1272, 1677, 1762, 1813
FauI CCCGC 1 cut(s) 151
FbaI TGATCA 2 cut(s) 402, 1603
Fnu4HI GCNGC 8 cut(s) 40, 345, 750, 792, 984, 1212, 1685, 1701
FokI GGATG 4 cut(s) 465, 504, 1061, 1481
FriOI GRGCYC 1 cut(s) 762
Fsp4HI GCNGC 8 cut(s) 40, 345, 750, 792, 984, 1212, 1685, 1701
FspBI CTAG 4 cut(s) 566, 1302, 1614, 1821
GlaI GCGC 3 cut(s) 43, 67, 1704
GluI GCNGC 8 cut(s) 40, 345, 750, 792, 984, 1212, 1685, 1701
GsaI CCCAGC 2 cut(s) 1714, 1808
GsuI CTGGAG 1 cut(s) 263
HaeII RGCGCY 2 cut(s) 69, 1706
HaeIII GGCC 2 cut(s) 934, 1271
HapII CCGG 6 cut(s) 408, 755, 809, 930, 1020, 1667
HgaI GACGC 1 cut(s) 70
HhaI GCGC 3 cut(s) 44, 68, 1705
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 7 cut(s) 626, 817, 1231, 1276, 1681, 1766, 1817
Hin6I GCGC 3 cut(s) 42, 66, 1703
HinP1I GCGC 3 cut(s) 42, 66, 1703
HincII GTYRAC 3 cut(s) 253, 697, 1293
HindII GTYRAC 3 cut(s) 253, 697, 1293
HindIII AAGCTT 3 cut(s) 72, 1316, 1367
HinfI GANTC 9 cut(s) 114, 130, 169, 336, 588, 775, 1294, 1493, 1658
HpaI GTTAAC 2 cut(s) 253, 697
HpaII CCGG 6 cut(s) 408, 755, 809, 930, 1020, 1667
HphI GGTGA 5 cut(s) 397, 443, 960, 1172, 1598
Hpy166II GTNNAC 7 cut(s) 139, 253, 296, 302, 397, 697, 1293
Hpy188I TCNGA 8 cut(s) 237, 522, 537, 607, 963, 1262, 1299, 1846
Hpy8I GTNNAC 7 cut(s) 139, 253, 296, 302, 397, 697, 1293
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 5 cut(s) 557, 796, 1039, 1210, 1225
HpyCH4III ACNGT 6 cut(s) 51, 629, 840, 904, 1515, 1857
HpyCH4IV ACGT 3 cut(s) 298, 492, 1289
HpyCH4V TGCA 8 cut(s) 431, 526, 684, 856, 986, 1058, 1677, 1700
HpyF10VI GCNNNNNNNGC 7 cut(s) 350, 797, 853, 1157, 1706, 1711, 1720
HpyF3I CTNAG 7 cut(s) 173, 801, 877, 960, 1146, 1311, 1326
HpySE526I ACGT 3 cut(s) 298, 492, 1289
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 7 cut(s) 626, 817, 1231, 1276, 1681, 1766, 1817
HspAI GCGC 3 cut(s) 42, 66, 1703
Kpn2I TCCGGA 2 cut(s) 754, 808
Ksp22I TGATCA 2 cut(s) 402, 1603
KspAI GTTAAC 2 cut(s) 253, 697
Kzo9I GATC 8 cut(s) 85, 402, 727, 863, 1009, 1105, 1603, 1627
LguI GCTCTTC 1 cut(s) 1353
LmnI GCTCC 8 cut(s) 39, 757, 757, 943, 991, 1219, 1378, 1681
Lsp1109I GCAGC 6 cut(s) 356, 761, 803, 970, 1671, 1712
LweI GCATC 4 cut(s) 513, 843, 1180, 1687
MaeI CTAG 4 cut(s) 566, 1302, 1614, 1821
MaeII ACGT 3 cut(s) 298, 492, 1289
MaeIII GTNAC 5 cut(s) 449, 733, 966, 1471, 1864
MalI GATC 8 cut(s) 87, 404, 729, 865, 1011, 1107, 1605, 1629
MboI GATC 8 cut(s) 85, 402, 727, 863, 1009, 1105, 1603, 1627
MfeI CAATTG 1 cut(s) 679
MflI RGATCY 4 cut(s) 727, 863, 1009, 1627
MhlI GDGCHC 2 cut(s) 762, 1026
MlsI TGGCCA 1 cut(s) 1271
MluNI TGGCCA 1 cut(s) 1271
MlyI GAGTC 3 cut(s) 345, 597, 1288
MmeI TCCRAC 4 cut(s) 630, 1497, 1783, 1839
Mox20I TGGCCA 1 cut(s) 1271
MroI TCCGGA 2 cut(s) 754, 808
MscI TGGCCA 1 cut(s) 1271
MseI TTAA 9 cut(s) 252, 485, 530, 597, 696, 1086, 1365, 1502, 1557
MslI CAYNNNNRTG 2 cut(s) 621, 627
Msp20I TGGCCA 1 cut(s) 1271
MspCI CTTAAG 1 cut(s) 1364
MspI CCGG 6 cut(s) 408, 755, 809, 930, 1020, 1667
MspR9I CCNGG 6 cut(s) 861, 931, 996, 1021, 1376, 1740
MunI CAATTG 1 cut(s) 679
Mva1269I GAATGC 2 cut(s) 417, 508
MvaI CCWGG 4 cut(s) 861, 996, 1376, 1740
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 7 cut(s) 350, 797, 853, 1157, 1706, 1711, 1720
NciI CCSGG 2 cut(s) 931, 1021
NcoI CCATGG 1 cut(s) 1272
NdeII GATC 8 cut(s) 85, 402, 727, 863, 1009, 1105, 1603, 1627
NlaIII CATG 7 cut(s) 626, 817, 1231, 1276, 1681, 1766, 1817
NlaIV GGNNCC 5 cut(s) 865, 945, 993, 1142, 1215
NmuCI GTSAC 2 cut(s) 449, 966
NspI RCATGY 1 cut(s) 817
NspV TTCGAA 1 cut(s) 421
PagI TCATGA 2 cut(s) 622, 1227
PciSI GCTCTTC 1 cut(s) 1353
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PctI GAATGC 2 cut(s) 417, 508
PfeI GAWTC 6 cut(s) 114, 130, 169, 775, 1493, 1658
PkrI GCNGC 8 cut(s) 41, 346, 751, 793, 985, 1213, 1686, 1702
PleI GAGTC 3 cut(s) 344, 596, 1288
PpsI GAGTC 3 cut(s) 344, 596, 1288
PshBI ATTAAT 1 cut(s) 597
Psp124BI GAGCTC 1 cut(s) 762
Psp6I CCWGG 4 cut(s) 859, 994, 1374, 1738
PspFI CCCAGC 2 cut(s) 1710, 1804
PspGI CCWGG 4 cut(s) 859, 994, 1374, 1738
PspN4I GGNNCC 5 cut(s) 865, 945, 993, 1142, 1215
PspPI GGNCC 1 cut(s) 932
PstNI CAGNNNCTG 3 cut(s) 797, 1064, 1706
PsuI RGATCY 4 cut(s) 727, 863, 1009, 1627
RsaI GTAC 3 cut(s) 149, 438, 461
RsaNI GTAC 3 cut(s) 148, 437, 460
RseI CAYNNNNRTG 2 cut(s) 621, 627
SacI GAGCTC 1 cut(s) 762
SapI GCTCTTC 1 cut(s) 1353
SaqAI TTAA 9 cut(s) 252, 485, 530, 597, 696, 1086, 1365, 1502, 1557
SatI GCNGC 8 cut(s) 40, 345, 750, 792, 984, 1212, 1685, 1701
Sau3AI GATC 8 cut(s) 85, 402, 727, 863, 1009, 1105, 1603, 1627
Sau96I GGNCC 1 cut(s) 932
SchI GAGTC 3 cut(s) 345, 597, 1288
ScrFI CCNGG 6 cut(s) 861, 931, 996, 1021, 1376, 1740
SduI GDGCHC 2 cut(s) 762, 1026
SfaNI GCATC 4 cut(s) 513, 843, 1180, 1687
SfcI CTRYAG 1 cut(s) 1005
SfuI TTCGAA 1 cut(s) 421
SmiMI CAYNNNNRTG 2 cut(s) 621, 627
SmlI CTYRAG 4 cut(s) 770, 884, 1364, 1382
SmoI CTYRAG 4 cut(s) 770, 884, 1364, 1382
SsiI CCGC 4 cut(s) 37, 40, 158, 1211
SspMI CTAG 4 cut(s) 566, 1302, 1614, 1821
SstI GAGCTC 1 cut(s) 762
StyD4I CCNGG 6 cut(s) 859, 929, 994, 1019, 1374, 1738
StyI CCWWGG 1 cut(s) 1272
TaaI ACNGT 6 cut(s) 51, 629, 840, 904, 1515, 1857
TaiI ACGT 3 cut(s) 301, 495, 1292
TaqI TCGA 5 cut(s) 84, 167, 421, 640, 1695
TaqII GACCGA 1 cut(s) 153
TatI WGTACW 1 cut(s) 459
TauI GCSGC 2 cut(s) 42, 1214
TfiI GAWTC 6 cut(s) 114, 130, 169, 775, 1493, 1658
Tru1I TTAA 9 cut(s) 252, 485, 530, 597, 696, 1086, 1365, 1502, 1557
Tru9I TTAA 9 cut(s) 252, 485, 530, 597, 696, 1086, 1365, 1502, 1557
TscAI CASTG 2 cut(s) 95, 1470
TseFI GTSAC 2 cut(s) 449, 966
TseI GCWGC 6 cut(s) 344, 749, 791, 983, 1684, 1700
Tsp45I GTSAC 2 cut(s) 449, 966
TspDTI ATGAA 8 cut(s) 467, 611, 650, 1026, 1244, 1253, 1473, 1802
TspGWI ACGGA 1 cut(s) 1443
TspRI CASTG 2 cut(s) 95, 1470
Vha464I CTTAAG 1 cut(s) 1364
VspI ATTAAT 1 cut(s) 597
XapI RAATTY 6 cut(s) 1033, 1240, 1456, 1559, 1770, 1874
XceI RCATGY 1 cut(s) 817
XspI CTAG 4 cut(s) 566, 1302, 1614, 1821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.