Rmu_sc0015855.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015855.1
OG0000480
Physical Location & Seq
Forward (+)
421 .. 894
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015855.1_g000002.1.cds

Sequence Viewer

Length: 474 bp
atggttcgcatcaagcacactgattcagcaagaatcctaaagaaaattccggagagagttgatgagaccgtgccatggaatccgatggatcgcgacatcgaaaagtacatcgaggagtattccataccgaactctgttaagctttcacctgtccctgcggacgccgatattcacacaggcgaaaatgtgcctattggtgccttgattttatctcctcagcacctgagatttatcaggtttccaatacatcctgtcttccaactcatgtggggtgtactcggtttgcacctacttcaacttaatccgcatgcttatctgattctgtctgcatttctaatcatgggttggaagtggggggcctccctgggactttcggattttctttatctataccattgtgccagaattggcaaactcagatattttaactttactccatacccgaagatgaaggtgttcggaggtttatccaat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

18.18

Weight (kDa)

9.24

Isoelectric Point (pI)

36.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AccII CGCG 1 cut(s) 93
AccIII TCCGGA 1 cut(s) 49
AciI CCGC 2 cut(s) 158, 305
AclWI GGATC 1 cut(s) 96
AcsI RAATTY 1 cut(s) 45
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 2 cut(s) 107, 276
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 1 cut(s) 296
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 1 cut(s) 96
AlwNI CAGNNNCTG 1 cut(s) 223
Aor13HI TCCGGA 1 cut(s) 49
AoxI GGCC 1 cut(s) 357
ApoI RAATTY 1 cut(s) 45
Asp700I GAANNNNTTC 1 cut(s) 455
AspS9I GGNCC 1 cut(s) 357
AsuHPI GGTGA 1 cut(s) 138
BanI GGYRCC 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 247
BbvCI CCTCAGC 1 cut(s) 216
BccI CCATC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 365
BcoDI GTCTC 1 cut(s) 59
Bme1390I CCNGG 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 2 cut(s) 199, 358
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 247
Bpu10I CCTNAGC 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 3 cut(s) 74, 363, 364
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 1 cut(s) 75
BseAI TCCGGA 1 cut(s) 49
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 3 cut(s) 74, 363, 364
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMII CTCAG 3 cut(s) 215, 230, 430
BseRI GAGGAG 2 cut(s) 128, 204
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 359
BshNI GGYRCC 1 cut(s) 197
BsiSI CCGG 1 cut(s) 50
BslFI GGGAC 2 cut(s) 137, 381
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 2 cut(s) 137, 381
BsnI GGCC 1 cut(s) 359
Bso31I GGTCTC 1 cut(s) 59
Bsp13I TCCGGA 1 cut(s) 49
Bsp143I GATC 1 cut(s) 88
Bsp19I CCATGG 1 cut(s) 74
Bsp68I TCGCGA 1 cut(s) 93
BspACI CCGC 2 cut(s) 158, 305
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 3 cut(s) 216, 229, 429
BspEI TCCGGA 1 cut(s) 49
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 199, 358
BspPI GGATC 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 59
BssECI CCNNGG 3 cut(s) 74, 363, 364
BssMI GATC 1 cut(s) 88
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 1 cut(s) 70
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 3 cut(s) 216, 224, 416
BstDSI CCRYGG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 1 cut(s) 88
BstNI CCWGG 1 cut(s) 365
BstNSI RCATGY 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 363
BstUI CGCG 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 247
BsuRI GGCC 1 cut(s) 359
BtgI CCRYGG 1 cut(s) 74
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 18
BtuMI TCGCGA 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 309
CaiI CAGNNNCTG 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 357
CseI GACGC 1 cut(s) 170
Csp6I GTAC 2 cut(s) 106, 275
CspCI CAANNNNNGTGG 2 cut(s) 248, 283
CviAII CATG 4 cut(s) 75, 265, 308, 340
CviJI RGCY 2 cut(s) 142, 359
CviKI_1 RGCY 2 cut(s) 142, 359
CviQI GTAC 2 cut(s) 106, 275
DdeI CTNAG 3 cut(s) 216, 224, 416
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 74
Eco31I GGTCTC 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 4 cut(s) 78, 268, 311, 343
FaiI YATR 7 cut(s) 76, 125, 266, 309, 341, 391, 439
FaqI GGGAC 2 cut(s) 137, 381
FatI CATG 4 cut(s) 74, 264, 307, 339
FokI GGATG 1 cut(s) 234
HaeIII GGCC 1 cut(s) 359
HapII CCGG 1 cut(s) 50
HgaI GACGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 4 cut(s) 78, 268, 311, 343
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 4 cut(s) 23, 33, 79, 319
HpaII CCGG 1 cut(s) 50
HphI GGTGA 1 cut(s) 138
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 5 cut(s) 84, 318, 376, 419, 461
Hpy188III TCNNGA 2 cut(s) 50, 92
Hpy8I GTNNAC 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 445
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 2 cut(s) 286, 329
HpyF3I CTNAG 3 cut(s) 216, 224, 416
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 4 cut(s) 78, 268, 311, 343
Kpn2I TCCGGA 1 cut(s) 49
Kzo9I GATC 1 cut(s) 88
LweI GCATC 1 cut(s) 18
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 247, 457
MluCI AATT 2 cut(s) 45, 405
MmeI TCCRAC 2 cut(s) 283, 326
MnlI CCTC 4 cut(s) 106, 225, 370, 455
MroI TCCGGA 1 cut(s) 49
MroXI GAANNNNTTC 1 cut(s) 455
MseI TTAA 3 cut(s) 138, 300, 426
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 365
MvaI CCWGG 1 cut(s) 365
MvnI CGCG 1 cut(s) 93
NcoI CCATGG 1 cut(s) 74
NdeII GATC 1 cut(s) 88
NlaIII CATG 4 cut(s) 78, 268, 311, 343
NlaIV GGNNCC 2 cut(s) 199, 358
NruI TCGCGA 1 cut(s) 93
NspI RCATGY 1 cut(s) 311
PaeI GCATGC 1 cut(s) 311
PasI CCCWGGG 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 455
PfeI GAWTC 4 cut(s) 23, 33, 79, 319
Psp6I CCWGG 1 cut(s) 363
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 2 cut(s) 199, 358
PspPI GGNCC 1 cut(s) 357
PstNI CAGNNNCTG 1 cut(s) 223
RruI TCGCGA 1 cut(s) 93
RsaI GTAC 2 cut(s) 107, 276
RsaNI GTAC 2 cut(s) 106, 275
SaqAI TTAA 3 cut(s) 138, 300, 426
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 1 cut(s) 357
ScrFI CCNGG 1 cut(s) 365
SetI ASST 7 cut(s) 144, 151, 225, 239, 291, 456, 466
SfaNI GCATC 1 cut(s) 18
SphI GCATGC 1 cut(s) 311
Sse9I AATT 2 cut(s) 45, 405
SsiI CCGC 2 cut(s) 158, 305
StyD4I CCNGG 1 cut(s) 363
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 70
TaqI TCGA 2 cut(s) 99, 111
TasI AATT 2 cut(s) 45, 405
TatI WGTACW 2 cut(s) 105, 274
TfiI GAWTC 4 cut(s) 23, 33, 79, 319
Tru1I TTAA 3 cut(s) 138, 300, 426
Tru9I TTAA 3 cut(s) 138, 300, 426
TscAI CASTG 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 464
TspRI CASTG 1 cut(s) 25
XapI RAATTY 1 cut(s) 45
XceI RCATGY 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.