Rmu_sc0002480.1_g000026

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002480.1
OG0000480
Physical Location & Seq
Reverse (-)
109270 .. 110019
750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002480.1_g000026.1.cds

Sequence Viewer

Length: 501 bp
atgccaccaccgccacccaaggctttggagctcaaattcaagaaacgggacaacatatatatcttagctggggagtccctttctgccaatggcttggcggcgtcggcggtggtctgctcctttgtatcgtcacatcctaaattaggaggtcctcctaggagccctatggcgctgtataatgaggtttgtgcctctcagcttgataaactcaacgaggcgaatcgtaaactcgagtttaaagagaaagagctcgatgatcagatgaggacaatggtggaattggcctctgttcttaaggacaagaaccgcgagataacgaagtggaatcaggctctgactgaagaagacaaaaggcgctacgtaggccctaatgagttcaatcatttttatgggtttgatcatatgggttattctcccattcacggcatgctgccaagagatgtcccgtcgcctgccttgagcgcatctgatgaggaggaggaggtgtcatctgccgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.52

Weight (kDa)

5.62

Isoelectric Point (pI)

53.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 309
AciI CCGC 5 cut(s) 11, 98, 107, 307, 495
AcsI RAATTY 1 cut(s) 35
AcuI CTGAAG 1 cut(s) 360
AcyI GRCGYC 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 143, 422
AflII CTTAAG 1 cut(s) 293
AgsI TTSAA 2 cut(s) 40, 379
AluBI AGCT 4 cut(s) 31, 68, 199, 250
AluI AGCT 4 cut(s) 31, 68, 199, 250
Alw21I GWGCWC 2 cut(s) 33, 252
AlwNI CAGNNNCTG 1 cut(s) 334
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 2 cut(s) 282, 364
ApeKI GCWGC 1 cut(s) 430
ApoI RAATTY 1 cut(s) 35
AspA2I CCTAGG 1 cut(s) 155
AspLEI GCGC 3 cut(s) 172, 357, 464
AspS9I GGNCC 2 cut(s) 149, 365
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 149
AvrII CCTAGG 1 cut(s) 155
BanII GRGCYC 3 cut(s) 33, 164, 252
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 2 cut(s) 33, 252
BbvI GCAGC 1 cut(s) 417
BceAI ACGGC 1 cut(s) 439
BclI TGATCA 2 cut(s) 256, 397
BfaI CTAG 1 cut(s) 156
BfoI RGCGCY 2 cut(s) 173, 358
BfrI CTTAAG 1 cut(s) 293
BisI GCNGC 3 cut(s) 99, 431, 495
BlnI CCTAGG 1 cut(s) 155
BlsI GCNGC 3 cut(s) 100, 432, 496
Bme18I GGWCC 1 cut(s) 149
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 2 cut(s) 149, 365
BmiI GGNNCC 1 cut(s) 161
BmsI GCATC 1 cut(s) 473
BpiI GAAGAC 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 478
BsaAI YACGTR 1 cut(s) 361
BsaHI GRCGYC 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 18, 155
BsaXI ACNNNNNCTCC 2 cut(s) 470, 500
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 422
BseDI CCNNGG 2 cut(s) 18, 155
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 143, 422
BseMII CTCAG 1 cut(s) 209
BseRI GAGGAG 3 cut(s) 488, 491, 494
BseXI GCAGC 1 cut(s) 417
BseYI CCCAGC 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 309
BshFI GGCC 2 cut(s) 284, 366
BsiHKAI GWGCWC 2 cut(s) 33, 252
BsiHKCI CYCGRG 1 cut(s) 230
BslFI GGGAC 3 cut(s) 61, 62, 428
BslI CCNNNNNNNGG 2 cut(s) 143, 422
BsmFI GGGAC 3 cut(s) 61, 62, 428
BsnI GGCC 2 cut(s) 284, 366
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 3 cut(s) 33, 164, 252
Bsp143I GATC 2 cut(s) 256, 397
BspACI CCGC 5 cut(s) 11, 98, 107, 307, 495
BspANI GGCC 2 cut(s) 284, 366
BspCNI CTCAG 1 cut(s) 208
BspFNI CGCG 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 161
BspTI CTTAAG 1 cut(s) 293
BssECI CCNNGG 2 cut(s) 18, 155
BssMI GATC 2 cut(s) 256, 397
BssNI GRCGYC 1 cut(s) 101
BssT1I CCWWGG 2 cut(s) 18, 155
BstACI GRCGYC 1 cut(s) 101
BstAFI CTTAAG 1 cut(s) 293
BstBAI YACGTR 1 cut(s) 361
BstC8I GCNNGC 2 cut(s) 428, 453
BstDEI CTNAG 2 cut(s) 64, 195
BstENI CCTNNNNNAGG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 133
BstFNI CGCG 1 cut(s) 309
BstH2I RGCGCY 2 cut(s) 173, 358
BstHHI GCGC 3 cut(s) 172, 357, 464
BstKTI GATC 2 cut(s) 259, 400
BstMBI GATC 2 cut(s) 256, 397
BstMWI GCNNNNNNNGC 4 cut(s) 10, 104, 363, 461
BstNSI RCATGY 1 cut(s) 430
BstSNI TACGTA 1 cut(s) 361
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 1 cut(s) 417
BstV2I GAAGAC 1 cut(s) 351
BstXI CCANNNNNNTGG 2 cut(s) 25, 94
BsuRI GGCC 2 cut(s) 284, 366
BtsCI GGATG 1 cut(s) 133
Cac8I GCNNGC 2 cut(s) 428, 453
CaiI CAGNNNCTG 1 cut(s) 334
CfoI GCGC 3 cut(s) 172, 357, 464
Cfr13I GGNCC 2 cut(s) 149, 365
CseI GACGC 1 cut(s) 90
CviAII CATG 1 cut(s) 427
DdeI CTNAG 2 cut(s) 64, 195
DpnI GATC 2 cut(s) 258, 399
DpnII GATC 2 cut(s) 256, 397
DraI TTTAAA 1 cut(s) 238
Ecl136II GAGCTC 2 cut(s) 31, 250
Eco105I TACGTA 1 cut(s) 361
Eco130I CCWWGG 2 cut(s) 18, 155
Eco24I GRGCYC 3 cut(s) 33, 164, 252
Eco47I GGWCC 1 cut(s) 149
Eco53kI GAGCTC 2 cut(s) 31, 250
Eco57I CTGAAG 1 cut(s) 360
Eco88I CYCGRG 1 cut(s) 230
EcoICRI GAGCTC 2 cut(s) 31, 250
EcoNI CCTNNNNNAGG 1 cut(s) 141
EcoO109I RGGNCCY 2 cut(s) 149, 365
EcoT14I CCWWGG 2 cut(s) 18, 155
EcoT38I GRGCYC 3 cut(s) 33, 164, 252
ErhI CCWWGG 2 cut(s) 18, 155
FaeI CATG 1 cut(s) 430
FaiI YATR 9 cut(s) 56, 58, 60, 167, 177, 390, 402, 404, 428
FaqI GGGAC 3 cut(s) 61, 62, 428
FatI CATG 1 cut(s) 426
FauNDI CATATG 1 cut(s) 402
FbaI TGATCA 2 cut(s) 256, 397
Fnu4HI GCNGC 3 cut(s) 99, 431, 495
FokI GGATG 1 cut(s) 120
FriOI GRGCYC 3 cut(s) 33, 164, 252
Fsp4HI GCNGC 3 cut(s) 99, 431, 495
FspBI CTAG 1 cut(s) 156
GlaI GCGC 3 cut(s) 171, 356, 463
GluI GCNGC 3 cut(s) 99, 431, 495
GsaI CCCAGC 1 cut(s) 72
HaeII RGCGCY 2 cut(s) 173, 358
HaeIII GGCC 2 cut(s) 284, 366
HgaI GACGC 1 cut(s) 90
HhaI GCGC 3 cut(s) 172, 357, 464
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 1 cut(s) 430
Hin6I GCGC 3 cut(s) 170, 355, 462
HinP1I GCGC 3 cut(s) 170, 355, 462
HinfI GANTC 3 cut(s) 74, 220, 325
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 3 cut(s) 261, 336, 469
Hpy188III TCNNGA 1 cut(s) 40
Hpy8I GTNNAC 1 cut(s) 227
Hpy99I CGWCG 2 cut(s) 106, 451
HpyCH4IV ACGT 1 cut(s) 360
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 104, 363, 461
HpyF3I CTNAG 2 cut(s) 64, 195
HpySE526I ACGT 1 cut(s) 360
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 1 cut(s) 430
HspAI GCGC 3 cut(s) 170, 355, 462
Ksp22I TGATCA 2 cut(s) 256, 397
Kzo9I GATC 2 cut(s) 256, 397
LmnI GCTCC 3 cut(s) 28, 122, 159
LpnPI CCDG 3 cut(s) 54, 314, 465
Lsp1109I GCAGC 1 cut(s) 417
LweI GCATC 1 cut(s) 473
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 129
MalI GATC 2 cut(s) 258, 399
MboI GATC 2 cut(s) 256, 397
MboII GAAGA 2 cut(s) 353, 356
MhlI GDGCHC 3 cut(s) 33, 164, 252
MluCI AATT 3 cut(s) 35, 140, 278
MlyI GAGTC 1 cut(s) 83
MseI TTAA 2 cut(s) 237, 294
MslI CAYNNNNRTG 1 cut(s) 387
MspCI CTTAAG 1 cut(s) 293
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 4 cut(s) 10, 104, 363, 461
NdeI CATATG 1 cut(s) 402
NdeII GATC 2 cut(s) 256, 397
NlaIII CATG 1 cut(s) 430
NlaIV GGNNCC 1 cut(s) 161
NmuCI GTSAC 1 cut(s) 129
NspI RCATGY 1 cut(s) 430
PaeI GCATGC 1 cut(s) 430
PaeR7I CTCGAG 1 cut(s) 230
PfeI GAWTC 2 cut(s) 220, 325
PkrI GCNGC 3 cut(s) 100, 432, 496
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Ppu21I YACGTR 1 cut(s) 361
PpuMI RGGWCCY 1 cut(s) 149
Psp124BI GAGCTC 2 cut(s) 33, 252
Psp5II RGGWCCY 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 161
PspPI GGNCC 2 cut(s) 149, 365
PspPPI RGGWCCY 1 cut(s) 149
PspXI VCTCGAGB 1 cut(s) 230
PstNI CAGNNNCTG 1 cut(s) 334
RseI CAYNNNNRTG 1 cut(s) 387
SacI GAGCTC 2 cut(s) 33, 252
SaqAI TTAA 2 cut(s) 237, 294
SatI GCNGC 3 cut(s) 99, 431, 495
Sau3AI GATC 2 cut(s) 256, 397
Sau96I GGNCC 2 cut(s) 149, 365
SchI GAGTC 1 cut(s) 83
SduI GDGCHC 3 cut(s) 33, 164, 252
SetI ASST 8 cut(s) 33, 70, 151, 186, 201, 252, 363, 486
SfaNI GCATC 1 cut(s) 473
Sfr274I CTCGAG 1 cut(s) 230
SinI GGWCC 1 cut(s) 149
SlaI CTCGAG 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 3 cut(s) 230, 293, 457
SmoI CTYRAG 3 cut(s) 230, 293, 457
SnaBI TACGTA 1 cut(s) 361
SphI GCATGC 1 cut(s) 430
Sse9I AATT 3 cut(s) 35, 140, 278
SsiI CCGC 5 cut(s) 11, 98, 107, 307, 495
SspMI CTAG 1 cut(s) 156
SstI GAGCTC 2 cut(s) 33, 252
StyI CCWWGG 2 cut(s) 18, 155
TaiI ACGT 1 cut(s) 363
TaqI TCGA 2 cut(s) 231, 252
TasI AATT 3 cut(s) 35, 140, 278
TauI GCSGC 2 cut(s) 101, 497
TfiI GAWTC 2 cut(s) 220, 325
Tru1I TTAA 2 cut(s) 237, 294
Tru9I TTAA 2 cut(s) 237, 294
TseFI GTSAC 1 cut(s) 129
TseI GCWGC 1 cut(s) 430
Tsp45I GTSAC 1 cut(s) 129
Vha464I CTTAAG 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 149
XagI CCTNNNNNAGG 1 cut(s) 141
XapI RAATTY 1 cut(s) 35
XceI RCATGY 1 cut(s) 430
XhoI CTCGAG 1 cut(s) 230
XmaJI CCTAGG 1 cut(s) 155
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.