Rorug05G0548900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000480
Physical Location & Seq
Forward (+)
73772199 .. 73774004
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0548900.1

Sequence Viewer

Length: 1011 bp
ATGGAGCAGAAGGGGAGGATATTCTTGATTTTGGTAGCAATGGCCTTTCATGGCACTGAATCTTTAAGTGATGATGATGGACCTCTTGTTCTTGACTATTACAAAGAAAAGTGCCCTTTGTTGGAAGAGATTGTGAGGCACAATGTTGAAGTTGCAGTTTTTAAAGATCCTCGAATGGCTGCTTCTCTCCTTCGCTTGCATTTTCATGATTGTTTTGTCATGGGTTGCGATGCATCTGTTCTTTTAGATAGTTTTGGAGGCATAACCAGTGAAAAGCAAGCAGGCCCCAACCTAAATTCTTTACGAGGATTTGAGGTTATCGATCAGATCAAATACCTCCTGGAAGAGGCTTGTCCAAGAACAGTATCATGTGCTGATATTCTAGCATTGGCTGCTCGTGATTCTGTTGCATCGAGAGGAGGGCCTAGCTGGGATGTGTGGCTAGGCAGGAGAGACTCCCTGCAAGCAAGCTTCAGTGGTGCCAACCAGTTCATCCCTGCTCCAAATAACTCTCTAGAAACCCTCATTTCCAATTTCAAACAACAAGGACTTGATATAGAAGACTTGGTTGCCTTGTCAGGTAGCCACACAATTGGAAAGGCAAGATGTTTAAGCTTCAGGCAGAGGGTGTATGATGTGAACTTCAAAGGACAGTACGAAATATACGATAAGTACAGGAGGTATACTTCCTTCCGAAGAATCTTACAGTCCATATGCCCCAAATCAGGGAGGAACAATGATTTAGCACCTCTAGATTTTATGACACCAGCCAGATTTGACAATCATTATTATGTCAACCTACTCCAAGGAAAAGGTTTGCTGGGTTCTGATACTGTATTGGTCACACAAGATCATGAAGGGGAGATCCTAAAGCAGGTGTGGGCTTATGCCACTGATGAGAAACTTTTCTTTGCTTCATTTGCAAACTCTATGGTGAAGATGGGAAACATCAATCCAATCACTGGAAATCAAGGAGAAATCAGGAAGAGTTGTAGGTTTGTCAACACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

37.69

Weight (kDa)

6.19

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 294 2.2e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 865
Acc36I ACCTGC 1 cut(s) 865
AccB1I GGYRCC 1 cut(s) 479
AccB7I CCANNNNNTGG 1 cut(s) 962
AccI GTMKAC 1 cut(s) 683
AclWI GGATC 2 cut(s) 161, 859
AcsI RAATTY 1 cut(s) 295
AcuI CTGAAG 2 cut(s) 457, 601
AfaI GTAC 2 cut(s) 656, 674
AfiI CCNNNNNNNGG 6 cut(s) 121, 346, 725, 726, 874, 962
AgsI TTSAA 3 cut(s) 149, 538, 646
AjnI CCWGG 1 cut(s) 339
AloI GAACNNNNNNTCC 2 cut(s) 72, 104
AluBI AGCT 3 cut(s) 429, 471, 615
AluI AGCT 3 cut(s) 429, 471, 615
Alw26I GTCTC 1 cut(s) 447
AlwI GGATC 2 cut(s) 161, 859
AoxI GGCC 3 cut(s) 42, 283, 422
ApeKI GCWGC 2 cut(s) 179, 392
ApoI RAATTY 1 cut(s) 295
Asp700I GAANNNNTTC 1 cut(s) 905
AspS9I GGNCC 3 cut(s) 80, 284, 422
AsuHPI GGTGA 1 cut(s) 946
AvaII GGWCC 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 116
BanI GGYRCC 1 cut(s) 479
BarI GAAGNNNNNNTAC 2 cut(s) 674, 706
BauI CACGAG 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 567
BbvI GCAGC 2 cut(s) 166, 379
BccI CCATC 2 cut(s) 71, 934
BciT130I CCWGG 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 6 cut(s) 383, 426, 443, 515, 752, 1009
BfuAI ACCTGC 1 cut(s) 865
BisI GCNGC 2 cut(s) 180, 393
BlsI GCNGC 2 cut(s) 181, 394
Bme1390I CCNGG 1 cut(s) 341
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 3 cut(s) 80, 284, 422
BmiI GGNNCC 2 cut(s) 286, 481
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 3 cut(s) 220, 242, 419
BpiI GAAGAC 1 cut(s) 567
Bsa29I ATCGAT 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 805
Bsc4I CCNNNNNNNGG 6 cut(s) 121, 346, 725, 726, 874, 962
Bse1I ACTGG 3 cut(s) 267, 487, 967
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 341
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 805
BseGI GGATG 2 cut(s) 439, 492
BseLI CCNNNNNNNGG 6 cut(s) 121, 346, 725, 726, 874, 962
BseMI GCAATG 1 cut(s) 45
BseNI ACTGG 3 cut(s) 267, 487, 967
BseRI GAGGAG 1 cut(s) 432
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 2 cut(s) 166, 379
BseYI CCCAGC 2 cut(s) 429, 820
BshFI GGCC 3 cut(s) 44, 285, 424
BshNI GGYRCC 1 cut(s) 479
BshVI ATCGAT 1 cut(s) 321
BslI CCNNNNNNNGG 6 cut(s) 121, 346, 725, 726, 874, 962
BsmAI GTCTC 1 cut(s) 447
BsnI GGCC 3 cut(s) 44, 285, 424
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 5 cut(s) 166, 322, 327, 850, 864
BspANI GGCC 3 cut(s) 44, 285, 424
BspDI ATCGAT 1 cut(s) 321
BspHI TCATGA 2 cut(s) 205, 853
BspLI GGNNCC 2 cut(s) 286, 481
BspMI ACCTGC 1 cut(s) 865
BspPI GGATC 2 cut(s) 161, 859
BspT107I GGYRCC 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 3 cut(s) 267, 487, 967
BssECI CCNNGG 1 cut(s) 805
BssMI GATC 5 cut(s) 166, 322, 327, 850, 864
BssNAI GTATAC 1 cut(s) 684
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 805
Bst1107I GTATAC 1 cut(s) 684
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 4 cut(s) 364, 654, 708, 835
Bst6I CTCTTC 3 cut(s) 120, 339, 980
BstAPI GCANNNNNTGC 1 cut(s) 392
BstC8I GCNNGC 5 cut(s) 197, 279, 283, 465, 469
BstENI CCTNNNNNAGG 2 cut(s) 344, 872
BstF5I GGATG 2 cut(s) 439, 492
BstKTI GATC 5 cut(s) 169, 325, 330, 853, 867
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 5 cut(s) 166, 322, 327, 850, 864
BstMWI GCNNNNNNNGC 2 cut(s) 392, 920
BstNI CCWGG 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 339
BstSLI GKGCMC 1 cut(s) 116
BstV1I GCAGC 2 cut(s) 166, 379
BstV2I GAAGAC 1 cut(s) 567
BstX2I RGATCY 2 cut(s) 166, 864
BstXI CCANNNNNNTGG 1 cut(s) 593
BstYI RGATCY 2 cut(s) 166, 864
BstZ17I GTATAC 1 cut(s) 684
Bsu15I ATCGAT 1 cut(s) 321
BsuRI GGCC 3 cut(s) 44, 285, 424
BsuTUI ATCGAT 1 cut(s) 321
BtgZI GCGATG 1 cut(s) 243
BtsCI GGATG 2 cut(s) 439, 492
BtsIMutI CAGTG 5 cut(s) 54, 274, 481, 891, 960
BveI ACCTGC 1 cut(s) 865
Cac8I GCNNGC 5 cut(s) 197, 279, 283, 465, 469
CciI TCATGA 2 cut(s) 205, 853
Cfr13I GGNCC 3 cut(s) 80, 284, 422
ClaI ATCGAT 1 cut(s) 321
Csp6I GTAC 2 cut(s) 655, 673
CviAII CATG 5 cut(s) 50, 206, 220, 369, 854
CviQI GTAC 2 cut(s) 655, 673
DpnI GATC 5 cut(s) 168, 324, 329, 852, 866
DpnII GATC 5 cut(s) 166, 322, 327, 850, 864
DraI TTTAAA 1 cut(s) 163
Eam1104I CTCTTC 3 cut(s) 120, 339, 980
EarI CTCTTC 3 cut(s) 120, 339, 980
Eco130I CCWWGG 1 cut(s) 805
Eco47I GGWCC 1 cut(s) 80
Eco57I CTGAAG 2 cut(s) 457, 601
EcoNI CCTNNNNNAGG 2 cut(s) 344, 872
EcoO109I RGGNCCY 2 cut(s) 284, 422
EcoRII CCWGG 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 805
EcoT22I ATGCAT 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 805
FaeI CATG 5 cut(s) 53, 209, 223, 372, 857
FatI CATG 5 cut(s) 49, 205, 219, 368, 853
FauNDI CATATG 1 cut(s) 713
FblI GTMKAC 1 cut(s) 683
Fnu4HI GCNGC 2 cut(s) 180, 393
FokI GGATG 2 cut(s) 446, 479
Fsp4HI GCNGC 2 cut(s) 180, 393
FspBI CTAG 6 cut(s) 383, 426, 443, 515, 752, 1009
GluI GCNGC 2 cut(s) 180, 393
GsaI CCCAGC 2 cut(s) 433, 824
HaeIII GGCC 3 cut(s) 44, 285, 424
Hin1II CATG 5 cut(s) 53, 209, 223, 372, 857
HincII GTYRAC 2 cut(s) 796, 1003
HindII GTYRAC 2 cut(s) 796, 1003
HindIII AAGCTT 2 cut(s) 469, 613
HinfI GANTC 4 cut(s) 59, 401, 455, 699
HphI GGTGA 1 cut(s) 946
Hpy166II GTNNAC 4 cut(s) 640, 684, 796, 1003
Hpy188I TCNGA 3 cut(s) 327, 695, 829
Hpy188III TCNNGA 9 cut(s) 25, 92, 206, 398, 414, 515, 752, 854, 982
Hpy8I GTNNAC 4 cut(s) 640, 684, 796, 1003
HpyAV CCTTC 4 cut(s) 4, 200, 700, 851
HpyCH4III ACNGT 4 cut(s) 364, 654, 708, 835
HpyCH4V TGCA 6 cut(s) 155, 199, 233, 410, 463, 923
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 920
Hsp92II CATG 5 cut(s) 53, 209, 223, 372, 857
Kzo9I GATC 5 cut(s) 166, 322, 327, 850, 864
LmnI GCTCC 2 cut(s) 4, 505
Lsp1109I GCAGC 2 cut(s) 166, 379
LweI GCATC 3 cut(s) 220, 242, 419
MaeI CTAG 6 cut(s) 383, 426, 443, 515, 752, 1009
MaeIII GTNAC 1 cut(s) 841
MalI GATC 5 cut(s) 168, 324, 329, 852, 866
MboI GATC 5 cut(s) 166, 322, 327, 850, 864
MboII GAAGA 6 cut(s) 137, 356, 572, 708, 949, 997
MfeI CAATTG 1 cut(s) 591
MflI RGATCY 2 cut(s) 166, 864
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 3 cut(s) 295, 532, 591
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 102
Mph1103I ATGCAT 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 905
MseI TTAA 3 cut(s) 65, 162, 611
MslI CAYNNNNRTG 2 cut(s) 204, 789
MspR9I CCNGG 1 cut(s) 341
MunI CAATTG 1 cut(s) 591
MvaI CCWGG 1 cut(s) 341
MwoI GCNNNNNNNGC 2 cut(s) 392, 920
NdeI CATATG 1 cut(s) 713
NdeII GATC 5 cut(s) 166, 322, 327, 850, 864
NlaIII CATG 5 cut(s) 53, 209, 223, 372, 857
NlaIV GGNNCC 2 cut(s) 286, 481
NmuCI GTSAC 1 cut(s) 841
NsiI ATGCAT 1 cut(s) 235
PagI TCATGA 2 cut(s) 205, 853
PaqCI CACCTGC 1 cut(s) 865
PcsI WCGNNNNNNNCGW 1 cut(s) 663
PdmI GAANNNNTTC 1 cut(s) 905
PfeI GAWTC 3 cut(s) 59, 401, 699
PflMI CCANNNNNTGG 1 cut(s) 962
PfoI TCCNGGA 1 cut(s) 339
PkrI GCNGC 2 cut(s) 181, 394
PleI GAGTC 1 cut(s) 449
PpsI GAGTC 1 cut(s) 449
Psp6I CCWGG 1 cut(s) 339
PspFI CCCAGC 2 cut(s) 429, 820
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 286, 481
PspPI GGNCC 3 cut(s) 80, 284, 422
PsuI RGATCY 2 cut(s) 166, 864
RsaI GTAC 2 cut(s) 656, 674
RsaNI GTAC 2 cut(s) 655, 673
RseI CAYNNNNRTG 2 cut(s) 204, 789
SaqAI TTAA 3 cut(s) 65, 162, 611
SatI GCNGC 2 cut(s) 180, 393
Sau3AI GATC 5 cut(s) 166, 322, 327, 850, 864
Sau96I GGNCC 3 cut(s) 80, 284, 422
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 341
SduI GDGCHC 1 cut(s) 116
SfaNI GCATC 3 cut(s) 220, 242, 419
SinI GGWCC 1 cut(s) 80
SmiMI CAYNNNNRTG 2 cut(s) 204, 789
Sse9I AATT 3 cut(s) 295, 532, 591
SspMI CTAG 6 cut(s) 383, 426, 443, 515, 752, 1009
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 805
TaaI ACNGT 4 cut(s) 364, 654, 708, 835
TaqI TCGA 3 cut(s) 172, 321, 413
TasI AATT 3 cut(s) 295, 532, 591
TatI WGTACW 1 cut(s) 672
TfiI GAWTC 3 cut(s) 59, 401, 699
Tru1I TTAA 3 cut(s) 65, 162, 611
Tru9I TTAA 3 cut(s) 65, 162, 611
TscAI CASTG 5 cut(s) 61, 274, 481, 898, 967
TseFI GTSAC 1 cut(s) 841
TseI GCWGC 2 cut(s) 179, 392
Tsp45I GTSAC 1 cut(s) 841
TspDTI ATGAA 5 cut(s) 38, 194, 481, 870, 906
TspRI CASTG 5 cut(s) 61, 274, 481, 898, 967
Van91I CCANNNNNTGG 1 cut(s) 962
VpaK11BI GGWCC 1 cut(s) 80
XagI CCTNNNNNAGG 2 cut(s) 344, 872
XapI RAATTY 1 cut(s) 295
XbaI TCTAGA 2 cut(s) 514, 751
XmiI GTMKAC 1 cut(s) 683
XmnI GAANNNNTTC 1 cut(s) 905
XspI CTAG 6 cut(s) 383, 426, 443, 515, 752, 1009
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.