Rmu_co7989044.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7989044.1
OG0000480
Physical Location & Seq
Reverse (-)
2 .. 519
518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7989044.1_g000001.1.cds

Sequence Viewer

Length: 442 bp
gccgccgccgccgccacccaaagctctggagcttaaattcaagaaacgagacggaacctatatcttggctggggagtccctttcttccaatggcttggaggattcggcggtggccggcgcctttgtctcatcacatcctaaattagggggtcctcctaagagccctatggcgttgtacgatgacgtttgtgcctctcagcttgacgctctcctggcatctcatcgtctcttgcgcgacattgacactttgcataccaaacaacaacagaaacttgacgaggcgaatcgtaatctcaagtttaaagagaaagagcttgatgatcagatgaggacaatggtggaattgacctccgttctcgaggacaagaaccgcgagataataaagttgaagaatgatctgaccttagtaactcgaagcaaaaatgaggagttcccagaaggt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.38

Weight (kDa)

5.97

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 117
AccII CGCG 2 cut(s) 235, 373
AciI CCGC 6 cut(s) 3, 6, 9, 12, 108, 371
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 118
AfaI GTAC 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 2 cut(s) 41, 389
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 4 cut(s) 24, 32, 200, 314
AluI AGCT 4 cut(s) 24, 32, 200, 314
Alw26I GTCTC 3 cut(s) 43, 131, 231
Ama87I CYCGRG 1 cut(s) 357
AoxI GGCC 1 cut(s) 112
ApoI RAATTY 1 cut(s) 36
AspLEI GCGC 2 cut(s) 120, 235
AspS9I GGNCC 1 cut(s) 150
AvaI CYCGRG 1 cut(s) 357
AvaII GGWCC 1 cut(s) 150
BanI GGYRCC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 213
BclI TGATCA 1 cut(s) 320
BcoDI GTCTC 3 cut(s) 43, 131, 231
BfoI RGCGCY 1 cut(s) 121
BisI GCNGC 4 cut(s) 3, 6, 9, 12
BlsI GCNGC 4 cut(s) 4, 7, 10, 13
Bme1390I CCNGG 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 150
BmeT110I CYCGRG 1 cut(s) 357
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 3 cut(s) 56, 119, 151
BmrFI CCNGG 1 cut(s) 213
BmsI GCATC 1 cut(s) 225
BpmI CTGGAG 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse118I RCCGGY 1 cut(s) 114
BseBI CCWGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 134
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 441
BseYI CCCAGC 1 cut(s) 69
Bsh1236I CGCG 2 cut(s) 235, 373
BshFI GGCC 1 cut(s) 114
BshNI GGYRCC 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 357
BsiSI CCGG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 3 cut(s) 43, 131, 231
BsmBI CGTCTC 2 cut(s) 43, 231
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 1 cut(s) 114
BsoBI CYCGRG 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 2 cut(s) 320, 395
BspACI CCGC 6 cut(s) 3, 6, 9, 12, 108, 371
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 209
BspFNI CGCG 2 cut(s) 235, 373
BspLI GGNNCC 3 cut(s) 56, 119, 151
BspT107I GGYRCC 1 cut(s) 117
BsrFI RCCGGY 1 cut(s) 114
BssAI RCCGGY 1 cut(s) 114
BssMI GATC 2 cut(s) 320, 395
BssNI GRCGYC 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 213
BstACI GRCGYC 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 3 cut(s) 157, 196, 404
BstENI CCTNNNNNAGG 1 cut(s) 142
BstF5I GGATG 1 cut(s) 134
BstFNI CGCG 2 cut(s) 235, 373
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 2 cut(s) 120, 235
BstKTI GATC 2 cut(s) 323, 398
BstMAI GTCTC 3 cut(s) 43, 131, 231
BstMBI GATC 2 cut(s) 320, 395
BstMWI GCNNNNNNNGC 3 cut(s) 8, 11, 213
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BstUI CGCG 2 cut(s) 235, 373
BstXI CCANNNNNNTGG 2 cut(s) 26, 95
BsuRI GGCC 1 cut(s) 114
BtsCI GGATG 1 cut(s) 134
Cac8I GCNNGC 1 cut(s) 116
CfoI GCGC 2 cut(s) 120, 235
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 150
CseI GACGC 1 cut(s) 213
Csp6I GTAC 1 cut(s) 176
CviJI RGCY 8 cut(s) 24, 32, 69, 94, 114, 163, 200, 314
CviKI_1 RGCY 8 cut(s) 24, 32, 69, 94, 114, 163, 200, 314
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 3 cut(s) 157, 196, 404
DinI GGCGCC 1 cut(s) 119
DpnI GATC 2 cut(s) 322, 397
DpnII GATC 2 cut(s) 320, 395
DraI TTTAAA 1 cut(s) 302
EaeI YGGCCR 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 357
EcoNI CCTNNNNNAGG 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 165
EgeI GGCGCC 1 cut(s) 119
EheI GGCGCC 1 cut(s) 119
Esp3I CGTCTC 2 cut(s) 43, 231
FaiI YATR 3 cut(s) 61, 168, 253
FaqI GGGAC 1 cut(s) 62
FbaI TGATCA 1 cut(s) 320
Fnu4HI GCNGC 4 cut(s) 3, 6, 9, 12
FokI GGATG 1 cut(s) 121
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 4 cut(s) 3, 6, 9, 12
GlaI GCGC 2 cut(s) 119, 234
GluI GCNGC 4 cut(s) 3, 6, 9, 12
GsaI CCCAGC 1 cut(s) 73
GsuI CTGGAG 1 cut(s) 48
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 1 cut(s) 114
HapII CCGG 1 cut(s) 115
HgaI GACGC 1 cut(s) 213
HhaI GCGC 2 cut(s) 120, 235
Hin1I GRCGYC 1 cut(s) 118
Hin6I GCGC 2 cut(s) 118, 233
HinP1I GCGC 2 cut(s) 118, 233
HinfI GANTC 3 cut(s) 75, 102, 284
HpaII CCGG 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 325, 400
Hpy188III TCNNGA 3 cut(s) 27, 41, 357
HpyAV CCTTC 1 cut(s) 432
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 3 cut(s) 8, 11, 213
HpyF3I CTNAG 3 cut(s) 157, 196, 404
HpySE526I ACGT 1 cut(s) 184
Hsp92I GRCGYC 1 cut(s) 118
HspAI GCGC 2 cut(s) 118, 233
KasI GGCGCC 1 cut(s) 117
KroI GCCGGC 1 cut(s) 114
KroNI GCCGGC 1 cut(s) 116
Ksp22I TGATCA 1 cut(s) 320
Kzo9I GATC 2 cut(s) 320, 395
LmnI GCTCC 1 cut(s) 29
LpnPI CCDG 5 cut(s) 12, 55, 128, 198, 225
LweI GCATC 1 cut(s) 225
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 407
MalI GATC 2 cut(s) 322, 397
MboI GATC 2 cut(s) 320, 395
MboII GAAGA 2 cut(s) 76, 401
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 3 cut(s) 36, 141, 342
Mly113I GGCGCC 1 cut(s) 118
MlyI GAGTC 1 cut(s) 84
MnlI CCTC 8 cut(s) 92, 163, 203, 272, 322, 353, 359, 419
MroNI GCCGGC 1 cut(s) 114
MseI TTAA 2 cut(s) 34, 301
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
MvnI CGCG 2 cut(s) 235, 373
MwoI GCNNNNNNNGC 3 cut(s) 8, 11, 213
NaeI GCCGGC 1 cut(s) 116
NarI GGCGCC 1 cut(s) 118
NdeII GATC 2 cut(s) 320, 395
NgoMIV GCCGGC 1 cut(s) 114
NlaIV GGNNCC 3 cut(s) 56, 119, 151
PaeR7I CTCGAG 1 cut(s) 357
PdiI GCCGGC 1 cut(s) 116
PfeI GAWTC 2 cut(s) 102, 284
PkrI GCNGC 4 cut(s) 4, 7, 10, 13
PleI GAGTC 1 cut(s) 83
PluTI GGCGCC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 83
PpuMI RGGWCCY 1 cut(s) 150
Psp5II RGGWCCY 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 211
PspFI CCCAGC 1 cut(s) 69
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 3 cut(s) 56, 119, 151
PspPI GGNCC 1 cut(s) 150
PspPPI RGGWCCY 1 cut(s) 150
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SaqAI TTAA 2 cut(s) 34, 301
SatI GCNGC 4 cut(s) 3, 6, 9, 12
Sau3AI GATC 2 cut(s) 320, 395
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 213
SduI GDGCHC 1 cut(s) 165
SetI ASST 8 cut(s) 26, 34, 60, 187, 202, 316, 351, 405
SfaNI GCATC 1 cut(s) 225
SfoI GGCGCC 1 cut(s) 119
Sfr274I CTCGAG 1 cut(s) 357
SinI GGWCC 1 cut(s) 150
SlaI CTCGAG 1 cut(s) 357
SmlI CTYRAG 2 cut(s) 294, 357
SmoI CTYRAG 2 cut(s) 294, 357
Sse9I AATT 3 cut(s) 36, 141, 342
SsiI CCGC 6 cut(s) 3, 6, 9, 12, 108, 371
SspDI GGCGCC 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 211
TaiI ACGT 1 cut(s) 187
TaqI TCGA 2 cut(s) 358, 413
TasI AATT 3 cut(s) 36, 141, 342
TauI GCSGC 4 cut(s) 5, 8, 11, 14
TfiI GAWTC 2 cut(s) 102, 284
Tru1I TTAA 2 cut(s) 34, 301
Tru9I TTAA 2 cut(s) 34, 301
TspGWI ACGGA 2 cut(s) 67, 341
VpaK11BI GGWCC 1 cut(s) 150
XagI CCTNNNNNAGG 1 cut(s) 142
XapI RAATTY 1 cut(s) 36
XhoI CTCGAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.