Rroxscaffold_1G00012780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000480
Physical Location & Seq
Reverse (-)
15622389 .. 15623158
770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00012780.1

Sequence Viewer

Length: 702 bp
ATGCCTCCTCCTCCACCTAAAGTTCTAGAATTAAGTTTCGAGAAGCGCGACAACTCCTATGTTCTCGCAGGAGAATCCATGTTCACCAATGGTCCGGCCGCGTCGGCGGTAGCTAGTGCTTTGCATCACCGAGGCCTAATTCGGAGCTACCTCCCAAGAGTCCTACGGAACTTTACAATGACATGTGCGCTTTTCAACCGGATTTCTTTCCTTCCCCGTACAGCCCCTCGCGCCGTCCCACCATTTCTCGCGCAGCCTCGATGCCTTCCGGTTGAAGCAACAACAACAATTGGACGAGGCGAGTCGCCAACTCAAATCCCGGAAGAGGAACTTAAAGAACAGATGAAAACAATGGTGGACCTAAGTCACCTCCTCGAGGACAAAGATCGTCGATATAGCGACATTGAAAGCCGACTTGGACTTAGTAACTCGCAGCAAGGAGGAGGAGTTCGAGAGAGGGGCTGTTCGATGAAGCGCGTATCGCCCAAAATTTTCGGCGGGGTGGAATCAAGCCCCGACCGCAGAGGAGGACGGTGCTACGTTGGCCCCGACCACCCGAGCATTACTACGGATTTGCCCCCATGTGCTACTCTCCCATTCGTGGCATGCTTCCCCGGAGACGTTCCCTCCCATGCATCCAGGCTCTTCGTAGGCCATGGCCACGGGGATGAAGAAGTGTCCTCCACCCCTCGATCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

25.48

Weight (kDa)

8.8

Isoelectric Point (pI)

58.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 374
AccII CGCG 5 cut(s) 48, 101, 231, 251, 477
AciI CCGC 4 cut(s) 99, 107, 498, 520
AclWI GGATC 1 cut(s) 687
AcoI YGGCCR 2 cut(s) 96, 658
AcsI RAATTY 1 cut(s) 489
AfaI GTAC 1 cut(s) 220
AfiI CCNNNNNNNGG 3 cut(s) 325, 376, 601
AflIII ACRYGT 1 cut(s) 182
AgsI TTSAA 3 cut(s) 196, 275, 407
AjnI CCWGG 1 cut(s) 638
AjuI GAANNNNNNNTTGG 2 cut(s) 399, 431
AloI GAACNNNNNNTCC 2 cut(s) 432, 464
AluBI AGCT 2 cut(s) 113, 147
AluI AGCT 2 cut(s) 113, 147
Alw26I GTCTC 1 cut(s) 612
AlwI GGATC 1 cut(s) 687
Ama87I CYCGRG 2 cut(s) 374, 556
AoxI GGCC 5 cut(s) 96, 133, 544, 652, 658
ApeKI GCWGC 2 cut(s) 253, 433
ApoI RAATTY 1 cut(s) 489
AspLEI GCGC 5 cut(s) 48, 190, 233, 253, 477
AspS9I GGNCC 3 cut(s) 92, 358, 545
AsuC2I CCSGG 2 cut(s) 320, 615
AsuHPI GGTGA 3 cut(s) 76, 119, 359
AvaI CYCGRG 2 cut(s) 374, 556
AvaII GGWCC 2 cut(s) 92, 358
BalI TGGCCA 1 cut(s) 660
BbvI GCAGC 2 cut(s) 265, 445
BceAI ACGGC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 640
BcnI CCSGG 2 cut(s) 320, 615
BcoDI GTCTC 1 cut(s) 612
BfaI CTAG 2 cut(s) 26, 114
BglI GCCNNNNNGGC 1 cut(s) 104
BisI GCNGC 3 cut(s) 99, 254, 434
BlsI GCNGC 3 cut(s) 100, 255, 435
Bme1390I CCNGG 3 cut(s) 320, 615, 640
Bme18I GGWCC 2 cut(s) 92, 358
BmeT110I CYCGRG 2 cut(s) 374, 556
BmgT120I GGNCC 3 cut(s) 92, 358, 545
BmiI GGNNCC 1 cut(s) 547
BmrFI CCNGG 3 cut(s) 320, 615, 640
BmsI GCATC 3 cut(s) 133, 251, 644
BoxI GACNNNNGTC 1 cut(s) 363
BpuMI CCSGG 2 cut(s) 320, 615
BsaJI CCNNGG 4 cut(s) 130, 613, 655, 661
BsaWI WCCGGW 2 cut(s) 198, 268
BsaXI ACNNNNNCTCC 4 cut(s) 432, 462, 611, 641
Bsc4I CCNNNNNNNGG 3 cut(s) 325, 376, 601
BseBI CCWGG 1 cut(s) 640
BseDI CCNNGG 4 cut(s) 130, 613, 655, 661
BseGI GGATG 2 cut(s) 635, 673
BseLI CCNNNNNNNGG 3 cut(s) 325, 376, 601
BseRI GAGGAG 4 cut(s) 362, 456, 459, 540
BseX3I CGGCCG 1 cut(s) 96
BseXI GCAGC 2 cut(s) 265, 445
Bsh1236I CGCG 5 cut(s) 48, 101, 231, 251, 477
Bsh1285I CGRYCG 2 cut(s) 99, 520
BshFI GGCC 5 cut(s) 98, 135, 546, 654, 660
BsiEI CGRYCG 2 cut(s) 99, 520
BsiHKCI CYCGRG 2 cut(s) 374, 556
BsiSI CCGG 5 cut(s) 95, 199, 269, 320, 615
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 3 cut(s) 325, 376, 601
BsmAI GTCTC 1 cut(s) 612
BsmBI CGTCTC 1 cut(s) 612
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 5 cut(s) 98, 135, 546, 654, 660
BsoBI CYCGRG 2 cut(s) 374, 556
Bsp143I GATC 2 cut(s) 385, 692
Bsp19I CCATGG 1 cut(s) 655
BspACI CCGC 4 cut(s) 99, 107, 498, 520
BspANI GGCC 5 cut(s) 98, 135, 546, 654, 660
BspFNI CGCG 5 cut(s) 48, 101, 231, 251, 477
BspLI GGNNCC 1 cut(s) 547
BspPI GGATC 1 cut(s) 687
BspQI GCTCTTC 1 cut(s) 650
BssECI CCNNGG 4 cut(s) 130, 613, 655, 661
BssMI GATC 2 cut(s) 385, 692
BssT1I CCWWGG 1 cut(s) 655
Bst2UI CCWGG 1 cut(s) 640
Bst4CI ACNGT 1 cut(s) 534
Bst6I CTCTTC 2 cut(s) 318, 650
BstC8I GCNNGC 1 cut(s) 607
BstDEI CTNAG 2 cut(s) 362, 422
BstDSI CCRYGG 2 cut(s) 655, 661
BstENI CCTNNNNNAGG 1 cut(s) 374
BstF5I GGATG 2 cut(s) 635, 673
BstFNI CGCG 5 cut(s) 48, 101, 231, 251, 477
BstHHI GCGC 5 cut(s) 48, 190, 233, 253, 477
BstKTI GATC 2 cut(s) 388, 695
BstMAI GTCTC 1 cut(s) 612
BstMBI GATC 2 cut(s) 385, 692
BstMCI CGRYCG 2 cut(s) 99, 520
BstMWI GCNNNNNNNGC 5 cut(s) 104, 230, 481, 519, 543
BstNI CCWGG 1 cut(s) 640
BstNSI RCATGY 2 cut(s) 186, 609
BstPAI GACNNNNGTC 1 cut(s) 363
BstSCI CCNGG 3 cut(s) 318, 613, 638
BstUI CGCG 5 cut(s) 48, 101, 231, 251, 477
BstV1I GCAGC 2 cut(s) 265, 445
BstZI CGGCCG 1 cut(s) 96
BsuRI GGCC 5 cut(s) 98, 135, 546, 654, 660
BtgI CCRYGG 2 cut(s) 655, 661
BtsCI GGATG 2 cut(s) 635, 673
Cac8I GCNNGC 1 cut(s) 607
CfoI GCGC 5 cut(s) 48, 190, 233, 253, 477
Cfr13I GGNCC 3 cut(s) 92, 358, 545
CseI GACGC 1 cut(s) 90
Csp6I GTAC 1 cut(s) 219
CviAII CATG 6 cut(s) 79, 183, 582, 606, 632, 656
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 2 cut(s) 362, 422
DpnI GATC 2 cut(s) 387, 694
DpnII GATC 2 cut(s) 385, 692
EaeI YGGCCR 2 cut(s) 96, 658
EagI CGGCCG 1 cut(s) 96
Eam1104I CTCTTC 2 cut(s) 318, 650
EarI CTCTTC 2 cut(s) 318, 650
EclXI CGGCCG 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 655
Eco147I AGGCCT 1 cut(s) 135
Eco47I GGWCC 2 cut(s) 92, 358
Eco52I CGGCCG 1 cut(s) 96
Eco88I CYCGRG 2 cut(s) 374, 556
EcoNI CCTNNNNNAGG 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 638
EcoT14I CCWWGG 1 cut(s) 655
EcoT22I ATGCAT 1 cut(s) 637
ErhI CCWWGG 1 cut(s) 655
Esp3I CGTCTC 1 cut(s) 612
FaeI CATG 6 cut(s) 82, 186, 585, 609, 635, 659
FaiI YATR 8 cut(s) 60, 80, 184, 396, 583, 607, 633, 657
FalI AAGNNNNNCTT 2 cut(s) 315, 347
FaqI GGGAC 1 cut(s) 221
FatI CATG 6 cut(s) 78, 182, 581, 605, 631, 655
FauI CCCGC 1 cut(s) 491
Fnu4HI GCNGC 3 cut(s) 99, 254, 434
FokI GGATG 2 cut(s) 622, 680
Fsp4HI GCNGC 3 cut(s) 99, 254, 434
FspBI CTAG 2 cut(s) 26, 114
GlaI GCGC 5 cut(s) 47, 189, 232, 252, 476
GluI GCNGC 3 cut(s) 99, 254, 434
HaeIII GGCC 5 cut(s) 98, 135, 546, 654, 660
HapII CCGG 5 cut(s) 95, 199, 269, 320, 615
HgaI GACGC 1 cut(s) 90
HhaI GCGC 5 cut(s) 48, 190, 233, 253, 477
Hin1II CATG 6 cut(s) 82, 186, 585, 609, 635, 659
Hin6I GCGC 5 cut(s) 46, 188, 231, 251, 475
HinP1I GCGC 5 cut(s) 46, 188, 231, 251, 475
HinfI GANTC 4 cut(s) 74, 159, 302, 506
HpaII CCGG 5 cut(s) 95, 199, 269, 320, 615
HphI GGTGA 3 cut(s) 76, 119, 359
Hpy166II GTNNAC 2 cut(s) 84, 358
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 3 cut(s) 26, 40, 452
Hpy8I GTNNAC 2 cut(s) 84, 358
Hpy99I CGWCG 2 cut(s) 106, 393
HpyAV CCTTC 2 cut(s) 221, 275
HpyCH4III ACNGT 1 cut(s) 534
HpyCH4IV ACGT 2 cut(s) 540, 621
HpyCH4V TGCA 2 cut(s) 124, 635
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 230, 481, 519, 543
HpyF3I CTNAG 2 cut(s) 362, 422
HpySE526I ACGT 2 cut(s) 540, 621
Hsp92II CATG 6 cut(s) 82, 186, 585, 609, 635, 659
HspAI GCGC 5 cut(s) 46, 188, 231, 251, 475
Kzo9I GATC 2 cut(s) 385, 692
LguI GCTCTTC 1 cut(s) 650
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 8 cut(s) 54, 108, 212, 282, 333, 625, 628, 652
Lsp1109I GCAGC 2 cut(s) 265, 445
LweI GCATC 3 cut(s) 133, 251, 644
MaeI CTAG 2 cut(s) 26, 114
MaeII ACGT 2 cut(s) 540, 621
MaeIII GTNAC 2 cut(s) 365, 425
MalI GATC 2 cut(s) 387, 694
MboI GATC 2 cut(s) 385, 692
MboII GAAGA 3 cut(s) 335, 637, 683
MfeI CAATTG 1 cut(s) 288
MlsI TGGCCA 1 cut(s) 660
MluCI AATT 4 cut(s) 29, 138, 288, 489
MluNI TGGCCA 1 cut(s) 660
MlyI GAGTC 2 cut(s) 168, 311
Mox20I TGGCCA 1 cut(s) 660
Mph1103I ATGCAT 1 cut(s) 637
MscI TGGCCA 1 cut(s) 660
MseI TTAA 2 cut(s) 32, 333
MslI CAYNNNNRTG 1 cut(s) 666
Msp20I TGGCCA 1 cut(s) 660
MspI CCGG 5 cut(s) 95, 199, 269, 320, 615
MspR9I CCNGG 3 cut(s) 320, 615, 640
MunI CAATTG 1 cut(s) 288
MvaI CCWGG 1 cut(s) 640
MvnI CGCG 5 cut(s) 48, 101, 231, 251, 477
MwoI GCNNNNNNNGC 5 cut(s) 104, 230, 481, 519, 543
NciI CCSGG 2 cut(s) 320, 615
NcoI CCATGG 1 cut(s) 655
NdeII GATC 2 cut(s) 385, 692
NlaIII CATG 6 cut(s) 82, 186, 585, 609, 635, 659
NlaIV GGNNCC 1 cut(s) 547
NmuCI GTSAC 1 cut(s) 365
NsiI ATGCAT 1 cut(s) 637
NspI RCATGY 2 cut(s) 186, 609
PaeI GCATGC 1 cut(s) 609
PaeR7I CTCGAG 1 cut(s) 374
PceI AGGCCT 1 cut(s) 135
PciI ACATGT 1 cut(s) 182
PciSI GCTCTTC 1 cut(s) 650
PcsI WCGNNNNNNNCGW 2 cut(s) 45, 546
PfeI GAWTC 2 cut(s) 74, 506
PfoI TCCNGGA 1 cut(s) 318
PkrI GCNGC 3 cut(s) 100, 255, 435
PleI GAGTC 2 cut(s) 167, 310
PpsI GAGTC 2 cut(s) 167, 310
PscI ACATGT 1 cut(s) 182
PshAI GACNNNNGTC 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 638
PspGI CCWGG 1 cut(s) 638
PspN4I GGNNCC 1 cut(s) 547
PspPI GGNCC 3 cut(s) 92, 358, 545
PspXI VCTCGAGB 1 cut(s) 374
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
RseI CAYNNNNRTG 1 cut(s) 666
SapI GCTCTTC 1 cut(s) 650
SaqAI TTAA 2 cut(s) 32, 333
SatI GCNGC 3 cut(s) 99, 254, 434
Sau3AI GATC 2 cut(s) 385, 692
Sau96I GGNCC 3 cut(s) 92, 358, 545
SchI GAGTC 2 cut(s) 168, 311
ScrFI CCNGG 3 cut(s) 320, 615, 640
SetI ASST 8 cut(s) 19, 115, 149, 153, 363, 372, 543, 624
SfaNI GCATC 3 cut(s) 133, 251, 644
Sfr274I CTCGAG 1 cut(s) 374
SinI GGWCC 2 cut(s) 92, 358
SlaI CTCGAG 1 cut(s) 374
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
SphI GCATGC 1 cut(s) 609
Sse9I AATT 4 cut(s) 29, 138, 288, 489
SseBI AGGCCT 1 cut(s) 135
SsiI CCGC 4 cut(s) 99, 107, 498, 520
SspMI CTAG 2 cut(s) 26, 114
StuI AGGCCT 1 cut(s) 135
StyD4I CCNGG 3 cut(s) 318, 613, 638
StyI CCWWGG 1 cut(s) 655
TaaI ACNGT 1 cut(s) 534
TaiI ACGT 2 cut(s) 543, 624
TaqI TCGA 7 cut(s) 39, 259, 375, 391, 451, 467, 691
TasI AATT 4 cut(s) 29, 138, 288, 489
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 2 cut(s) 74, 506
Tru1I TTAA 2 cut(s) 32, 333
Tru9I TTAA 2 cut(s) 32, 333
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 2 cut(s) 253, 433
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 3 cut(s) 359, 485, 684
TspGWI ACGGA 2 cut(s) 181, 584
VpaK11BI GGWCC 2 cut(s) 92, 358
XagI CCTNNNNNAGG 1 cut(s) 374
XapI RAATTY 1 cut(s) 489
XbaI TCTAGA 1 cut(s) 25
XceI RCATGY 2 cut(s) 186, 609
XhoI CTCGAG 1 cut(s) 374
XspI CTAG 2 cut(s) 26, 114
Zsp2I ATGCAT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.