Rmu_sc0002162.1_g000032

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002162.1
OG0000480
Physical Location & Seq
Forward (+)
97925 .. 98489
565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002162.1_g000032.1.cds

Sequence Viewer

Length: 504 bp
atggaccctgggtgcccccctgtaggtcacagcaagcaaatcgtcgctactaatgaacgttctcctgattgtcgatcacctactcccatcgcgattccgtcctacggttcttctaataggtctgactcgcgtgctagtgaattccttttcaaagataatgctcttcagagttccaagggtgcagcggatcataccaacgacattgagacctatgcaccttttgccttgaggtctggcatcagcacgaggcgctctcgcctatgtagtttgagctttgatagggtcaaaactcctgagtcgtgccgcctcagagccctccgggaggagtcttttgtcttgcaagactcgctcgatcatactatgtcggaggtctatagcttgaaagcagaagtccgagagatgtcagcagaggttaagcgctcaagagatcatgctgaaagtctaaagctggaacttcgtgagggctatcgtcgggaaaggttcctcgacaaagttcatggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.82

Weight (kDa)

8.38

Isoelectric Point (pI)

75.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 12
AccII CGCG 2 cut(s) 92, 130
AciI CCGC 2 cut(s) 185, 304
AclI AACGTT 1 cut(s) 58
AclWI GGATC 1 cut(s) 195
AcsI RAATTY 1 cut(s) 140
AcuI CTGAAG 1 cut(s) 149
AfeI AGCGCT 1 cut(s) 419
AfiI CCNNNNNNNGG 3 cut(s) 23, 104, 322
AgsI TTSAA 2 cut(s) 151, 382
AjnI CCWGG 1 cut(s) 7
AluBI AGCT 3 cut(s) 273, 378, 448
AluI AGCT 3 cut(s) 273, 378, 448
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 1 cut(s) 195
Aor51HI AGCGCT 1 cut(s) 419
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 140
AspLEI GCGC 2 cut(s) 252, 420
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 1 cut(s) 69
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 12
BanII GRGCYC 1 cut(s) 316
BauI CACGAG 1 cut(s) 244
BbvI GCAGC 1 cut(s) 194
BccI CCATC 1 cut(s) 95
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BciT130I CCWGG 1 cut(s) 9
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 1 cut(s) 135
BfmI CTRYAG 2 cut(s) 21, 373
BfoI RGCGCY 2 cut(s) 253, 421
BisI GCNGC 2 cut(s) 183, 304
BlsI GCNGC 2 cut(s) 184, 305
Bme1390I CCNGG 2 cut(s) 9, 320
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 6, 14, 482
BmrFI CCNGG 2 cut(s) 9, 320
BmsI GCATC 1 cut(s) 246
BplI GAGNNNNNCTC 2 cut(s) 238, 270
BpuEI CTTGAG 2 cut(s) 247, 406
BpuMI CCSGG 1 cut(s) 320
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 3 cut(s) 7, 8, 174
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 104, 322
BseBI CCWGG 1 cut(s) 9
BseDI CCNNGG 3 cut(s) 7, 8, 174
BseLI CCNNNNNNNGG 3 cut(s) 23, 104, 322
BseMII CTCAG 2 cut(s) 285, 322
BseRI GAGGAG 1 cut(s) 338
BseSI GKGCMC 1 cut(s) 17
BseXI GCAGC 1 cut(s) 194
BsgI GTGCAG 1 cut(s) 201
Bsh1236I CGCG 2 cut(s) 92, 130
BshNI GGYRCC 1 cut(s) 12
BsiSI CCGG 1 cut(s) 319
BslI CCNNNNNNNGG 3 cut(s) 23, 104, 322
BsmAI GTCTC 1 cut(s) 200
Bso31I GGTCTC 1 cut(s) 200
Bsp1286I GDGCHC 2 cut(s) 17, 316
Bsp143I GATC 4 cut(s) 74, 187, 352, 427
Bsp68I TCGCGA 1 cut(s) 92
BspACI CCGC 2 cut(s) 185, 304
BspCNI CTCAG 2 cut(s) 286, 321
BspFNI CGCG 2 cut(s) 92, 130
BspLI GGNNCC 3 cut(s) 6, 14, 482
BspPI GGATC 1 cut(s) 195
BspQI GCTCTTC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 200
BssECI CCNNGG 3 cut(s) 7, 8, 174
BssMI GATC 4 cut(s) 74, 187, 352, 427
BssSI CACGAG 1 cut(s) 244
BssT1I CCWWGG 1 cut(s) 174
Bst2BI CACGAG 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 168
BstAPI GCANNNNNTGC 1 cut(s) 221
BstC8I GCNNGC 2 cut(s) 35, 132
BstDEI CTNAG 2 cut(s) 294, 308
BstENI CCTNNNNNAGG 1 cut(s) 320
BstFNI CGCG 2 cut(s) 92, 130
BstH2I RGCGCY 2 cut(s) 253, 421
BstHHI GCGC 2 cut(s) 252, 420
BstKTI GATC 4 cut(s) 77, 190, 355, 430
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 4 cut(s) 74, 187, 352, 427
BstMWI GCNNNNNNNGC 3 cut(s) 221, 249, 346
BstNI CCWGG 1 cut(s) 9
BstSCI CCNGG 2 cut(s) 7, 318
BstSFI CTRYAG 2 cut(s) 21, 373
BstSLI GKGCMC 1 cut(s) 17
BstUI CGCG 2 cut(s) 92, 130
BstV1I GCAGC 1 cut(s) 194
BtgZI GCGATG 1 cut(s) 73
BtuMI TCGCGA 1 cut(s) 92
Cac8I GCNNGC 2 cut(s) 35, 132
CfoI GCGC 2 cut(s) 252, 420
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 2 cut(s) 431, 497
CviJI RGCY 5 cut(s) 273, 314, 378, 448, 465
CviKI_1 RGCY 5 cut(s) 273, 314, 378, 448, 465
DdeI CTNAG 2 cut(s) 294, 308
DpnI GATC 4 cut(s) 76, 189, 354, 429
DpnII GATC 4 cut(s) 74, 187, 352, 427
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 316
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 4
Eco47III AGCGCT 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 149
EcoNI CCTNNNNNAGG 1 cut(s) 320
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 2 cut(s) 434, 500
FaiI YATR 8 cut(s) 192, 213, 262, 357, 362, 375, 432, 498
FatI CATG 2 cut(s) 430, 496
Fnu4HI GCNGC 2 cut(s) 183, 304
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 2 cut(s) 183, 304
FspBI CTAG 1 cut(s) 135
GlaI GCGC 2 cut(s) 251, 419
GluI GCNGC 2 cut(s) 183, 304
HaeII RGCGCY 2 cut(s) 253, 421
HapII CCGG 1 cut(s) 319
HhaI GCGC 2 cut(s) 252, 420
Hin1II CATG 2 cut(s) 434, 500
Hin6I GCGC 2 cut(s) 250, 418
HinP1I GCGC 2 cut(s) 250, 418
HinfI GANTC 5 cut(s) 94, 125, 296, 326, 344
HpaII CCGG 1 cut(s) 319
HphI GGTGA 1 cut(s) 69
Hpy188I TCNGA 5 cut(s) 124, 168, 311, 367, 395
Hpy188III TCNNGA 6 cut(s) 65, 91, 293, 423, 458, 473
Hpy99I CGWCG 2 cut(s) 47, 474
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 3 cut(s) 182, 215, 340
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 249, 346
HpyF3I CTNAG 2 cut(s) 294, 308
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 2 cut(s) 434, 500
HspAI GCGC 2 cut(s) 250, 418
Kzo9I GATC 4 cut(s) 74, 187, 352, 427
LguI GCTCTTC 1 cut(s) 168
LpnPI CCDG 7 cut(s) 21, 33, 78, 219, 306, 332, 434
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 1 cut(s) 246
MaeI CTAG 1 cut(s) 135
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 1 cut(s) 26
MalI GATC 4 cut(s) 76, 189, 354, 429
MboI GATC 4 cut(s) 74, 187, 352, 427
MboII GAAGA 2 cut(s) 102, 155
MhlI GDGCHC 2 cut(s) 17, 316
MluCI AATT 1 cut(s) 140
MlyI GAGTC 4 cut(s) 119, 305, 335, 338
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 9 cut(s) 222, 240, 316, 317, 326, 361, 403, 454, 494
MseI TTAA 2 cut(s) 414, 502
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 1 cut(s) 319
MspR9I CCNGG 2 cut(s) 9, 320
MvaI CCWGG 1 cut(s) 9
MvnI CGCG 2 cut(s) 92, 130
MwoI GCNNNNNNNGC 3 cut(s) 221, 249, 346
NciI CCSGG 1 cut(s) 320
NdeII GATC 4 cut(s) 74, 187, 352, 427
NlaIII CATG 2 cut(s) 434, 500
NlaIV GGNNCC 3 cut(s) 6, 14, 482
NmuCI GTSAC 1 cut(s) 26
NruI TCGCGA 1 cut(s) 92
PasI CCCWGGG 1 cut(s) 8
PciSI GCTCTTC 1 cut(s) 168
PfeI GAWTC 1 cut(s) 94
PfoI TCCNGGA 1 cut(s) 318
PkrI GCNGC 2 cut(s) 184, 305
PleI GAGTC 4 cut(s) 119, 304, 334, 338
PpsI GAGTC 4 cut(s) 119, 304, 334, 338
Psp1406I AACGTT 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 3 cut(s) 6, 14, 482
PspPI GGNCC 1 cut(s) 4
RruI TCGCGA 1 cut(s) 92
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 2 cut(s) 414, 502
SatI GCNGC 2 cut(s) 183, 304
Sau3AI GATC 4 cut(s) 74, 187, 352, 427
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 4 cut(s) 119, 305, 335, 338
ScrFI CCNGG 2 cut(s) 9, 320
SduI GDGCHC 2 cut(s) 17, 316
SfaNI GCATC 1 cut(s) 246
SfcI CTRYAG 2 cut(s) 21, 373
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 2 cut(s) 226, 421
SmoI CTYRAG 2 cut(s) 226, 421
Sse9I AATT 1 cut(s) 140
SsiI CCGC 2 cut(s) 185, 304
SspMI CTAG 1 cut(s) 135
StyD4I CCNGG 2 cut(s) 7, 318
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 107
TaiI ACGT 1 cut(s) 61
TaqI TCGA 3 cut(s) 73, 351, 486
TasI AATT 1 cut(s) 140
TauI GCSGC 1 cut(s) 306
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 2 cut(s) 414, 502
Tru9I TTAA 2 cut(s) 414, 502
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 69, 485
TspGWI ACGGA 1 cut(s) 87
VpaK11BI GGWCC 1 cut(s) 4
XagI CCTNNNNNAGG 1 cut(s) 320
XapI RAATTY 1 cut(s) 140
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.