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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 2 cut(s) | 56, 545 |
| AccB1I | GGYRCC | 1 cut(s) | 396 |
| AccII | CGCG | 1 cut(s) | 561 |
| AciI | CCGC | 6 cut(s) | 161, 185, 221, 239, 378, 654 |
| AcoI | YGGCCR | 1 cut(s) | 346 |
| AcsI | RAATTY | 1 cut(s) | 728 |
| AcyI | GRCGYC | 3 cut(s) | 381, 633, 809 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 422, 466, 776 |
| AgeI | ACCGGT | 1 cut(s) | 18 |
| AgsI | TTSAA | 1 cut(s) | 76 |
| AjnI | CCWGG | 4 cut(s) | 443, 681, 755, 787 |
| AluBI | AGCT | 3 cut(s) | 142, 296, 481 |
| AluI | AGCT | 3 cut(s) | 142, 296, 481 |
| Alw21I | GWGCWC | 1 cut(s) | 144 |
| Alw26I | GTCTC | 1 cut(s) | 431 |
| Ama87I | CYCGRG | 3 cut(s) | 56, 416, 545 |
| AoxI | GGCC | 6 cut(s) | 314, 346, 457, 684, 719, 827 |
| ApaI | GGGCCC | 1 cut(s) | 723 |
| ApeKI | GCWGC | 1 cut(s) | 448 |
| ApoI | RAATTY | 1 cut(s) | 728 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 602, 634 |
| AsiGI | ACCGGT | 1 cut(s) | 18 |
| AspLEI | GCGC | 1 cut(s) | 325 |
| AspS9I | GGNCC | 5 cut(s) | 21, 315, 550, 719, 720 |
| AsuHPI | GGTGA | 1 cut(s) | 255 |
| AsuII | TTCGAA | 1 cut(s) | 621 |
| AvaI | CYCGRG | 3 cut(s) | 56, 416, 545 |
| AvaII | GGWCC | 2 cut(s) | 21, 550 |
| AxyI | CCTNAGG | 2 cut(s) | 93, 281 |
| BaeGI | GKGCMC | 1 cut(s) | 723 |
| BanI | GGYRCC | 1 cut(s) | 396 |
| BanII | GRGCYC | 3 cut(s) | 144, 192, 723 |
| BbsI | GAAGAC | 1 cut(s) | 845 |
| Bbv12I | GWGCWC | 1 cut(s) | 144 |
| BbvI | GCAGC | 1 cut(s) | 460 |
| BccI | CCATC | 2 cut(s) | 396, 669 |
| BceAI | ACGGC | 1 cut(s) | 858 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 325, 359 |
| BciT130I | CCWGG | 4 cut(s) | 445, 683, 757, 789 |
| BciVI | GTATCC | 1 cut(s) | 858 |
| BcoDI | GTCTC | 1 cut(s) | 431 |
| BfaI | CTAG | 1 cut(s) | 600 |
| BfuI | GTATCC | 1 cut(s) | 858 |
| BisI | GCNGC | 2 cut(s) | 379, 449 |
| BlsI | GCNGC | 2 cut(s) | 380, 450 |
| Bme1390I | CCNGG | 4 cut(s) | 445, 683, 757, 789 |
| Bme18I | GGWCC | 2 cut(s) | 21, 550 |
| BmeT110I | CYCGRG | 3 cut(s) | 56, 416, 545 |
| BmgT120I | GGNCC | 5 cut(s) | 21, 315, 550, 719, 720 |
| BmiI | GGNNCC | 5 cut(s) | 189, 317, 398, 680, 721 |
| BmrFI | CCNGG | 4 cut(s) | 445, 683, 757, 789 |
| BmsI | GCATC | 3 cut(s) | 58, 698, 784 |
| BpiI | GAAGAC | 1 cut(s) | 845 |
| Bpu10I | CCTNAGC | 1 cut(s) | 63 |
| Bpu14I | TTCGAA | 1 cut(s) | 621 |
| BpuEI | CTTGAG | 3 cut(s) | 154, 295, 482 |
| Bsa29I | ATCGAT | 1 cut(s) | 84 |
| BsaAI | YACGTR | 1 cut(s) | 715 |
| BsaHI | GRCGYC | 3 cut(s) | 381, 633, 809 |
| BsaI | GGTCTC | 1 cut(s) | 431 |
| BsaJI | CCNNGG | 5 cut(s) | 400, 489, 755, 756, 788 |
| BsaWI | WCCGGW | 1 cut(s) | 18 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 422, 466, 776 |
| Bse118I | RCCGGY | 2 cut(s) | 18, 829 |
| Bse21I | CCTNAGG | 2 cut(s) | 93, 281 |
| BseBI | CCWGG | 4 cut(s) | 445, 683, 757, 789 |
| BseCI | ATCGAT | 1 cut(s) | 84 |
| BseDI | CCNNGG | 5 cut(s) | 400, 489, 755, 756, 788 |
| BseGI | GGATG | 5 cut(s) | 73, 275, 540, 680, 799 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 422, 466, 776 |
| BseMII | CTCAG | 3 cut(s) | 84, 272, 524 |
| BseRI | GAGGAG | 3 cut(s) | 116, 259, 629 |
| BseSI | GKGCMC | 1 cut(s) | 723 |
| BseX3I | CGGCCG | 1 cut(s) | 346 |
| BseXI | GCAGC | 1 cut(s) | 460 |
| Bsh1236I | CGCG | 1 cut(s) | 561 |
| Bsh1285I | CGRYCG | 2 cut(s) | 349, 736 |
| BshFI | GGCC | 6 cut(s) | 316, 348, 459, 686, 721, 829 |
| BshNI | GGYRCC | 1 cut(s) | 396 |
| BshTI | ACCGGT | 1 cut(s) | 18 |
| BshVI | ATCGAT | 1 cut(s) | 84 |
| BsiEI | CGRYCG | 2 cut(s) | 349, 736 |
| BsiHKAI | GWGCWC | 1 cut(s) | 144 |
| BsiHKCI | CYCGRG | 3 cut(s) | 56, 416, 545 |
| BsiSI | CCGG | 3 cut(s) | 19, 349, 830 |
| BslFI | GGGAC | 2 cut(s) | 644, 773 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 422, 466, 776 |
| BsmAI | GTCTC | 1 cut(s) | 431 |
| BsmFI | GGGAC | 2 cut(s) | 644, 773 |
| BsmI | GAATGC | 2 cut(s) | 11, 241 |
| BsnI | GGCC | 6 cut(s) | 316, 348, 459, 686, 721, 829 |
| Bso31I | GGTCTC | 1 cut(s) | 431 |
| BsoBI | CYCGRG | 3 cut(s) | 56, 416, 545 |
| Bsp119I | TTCGAA | 1 cut(s) | 621 |
| Bsp120I | GGGCCC | 1 cut(s) | 719 |
| Bsp1286I | GDGCHC | 3 cut(s) | 144, 192, 723 |
| Bsp143I | GATC | 2 cut(s) | 420, 733 |
| Bsp68I | TCGCGA | 1 cut(s) | 561 |
| BspACI | CCGC | 6 cut(s) | 161, 185, 221, 239, 378, 654 |
| BspANI | GGCC | 6 cut(s) | 316, 348, 459, 686, 721, 829 |
| BspCNI | CTCAG | 3 cut(s) | 85, 273, 525 |
| BspDI | ATCGAT | 1 cut(s) | 84 |
| BspFNI | CGCG | 1 cut(s) | 561 |
| BspLI | GGNNCC | 5 cut(s) | 189, 317, 398, 680, 721 |
| BspQI | GCTCTTC | 1 cut(s) | 441 |
| BspT104I | TTCGAA | 1 cut(s) | 621 |
| BspT107I | GGYRCC | 1 cut(s) | 396 |
| BspTNI | GGTCTC | 1 cut(s) | 431 |
| BsrFI | RCCGGY | 2 cut(s) | 18, 829 |
| BssAI | RCCGGY | 2 cut(s) | 18, 829 |
| BssECI | CCNNGG | 5 cut(s) | 400, 489, 755, 756, 788 |
| BssMI | GATC | 2 cut(s) | 420, 733 |
| BssNI | GRCGYC | 3 cut(s) | 381, 633, 809 |
| BssT1I | CCWWGG | 2 cut(s) | 400, 489 |
| Bst2UI | CCWGG | 4 cut(s) | 445, 683, 757, 789 |
| Bst4CI | ACNGT | 1 cut(s) | 372 |
| Bst6I | CTCTTC | 1 cut(s) | 441 |
| BstACI | GRCGYC | 3 cut(s) | 381, 633, 809 |
| BstBAI | YACGTR | 1 cut(s) | 715 |
| BstBI | TTCGAA | 1 cut(s) | 621 |
| BstC8I | GCNNGC | 1 cut(s) | 831 |
| BstDEI | CTNAG | 7 cut(s) | 29, 63, 93, 281, 359, 533, 693 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 464 |
| BstF5I | GGATG | 5 cut(s) | 73, 275, 540, 680, 799 |
| BstFNI | CGCG | 1 cut(s) | 561 |
| BstHHI | GCGC | 1 cut(s) | 325 |
| BstKTI | GATC | 2 cut(s) | 423, 736 |
| BstMAI | GTCTC | 1 cut(s) | 431 |
| BstMBI | GATC | 2 cut(s) | 420, 733 |
| BstMCI | CGRYCG | 2 cut(s) | 349, 736 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 68, 302, 322, 384, 815 |
| BstNI | CCWGG | 4 cut(s) | 445, 683, 757, 789 |
| BstSCI | CCNGG | 4 cut(s) | 443, 681, 755, 787 |
| BstSLI | GKGCMC | 1 cut(s) | 723 |
| BstSNI | TACGTA | 1 cut(s) | 715 |
| BstUI | CGCG | 1 cut(s) | 561 |
| BstV1I | GCAGC | 1 cut(s) | 460 |
| BstV2I | GAAGAC | 1 cut(s) | 845 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 374 |
| BstZI | CGGCCG | 1 cut(s) | 346 |
| Bsu15I | ATCGAT | 1 cut(s) | 84 |
| Bsu36I | CCTNAGG | 2 cut(s) | 93, 281 |
| BsuI | GTATCC | 1 cut(s) | 858 |
| BsuRI | GGCC | 6 cut(s) | 316, 348, 459, 686, 721, 829 |
| BsuTUI | ATCGAT | 1 cut(s) | 84 |
| BtgZI | GCGATG | 2 cut(s) | 114, 848 |
| BtsCI | GGATG | 5 cut(s) | 73, 275, 540, 680, 799 |
| BtuMI | TCGCGA | 1 cut(s) | 561 |
| Cac8I | GCNNGC | 1 cut(s) | 831 |
| CfoI | GCGC | 1 cut(s) | 325 |
| Cfr10I | RCCGGY | 2 cut(s) | 18, 829 |
| Cfr13I | GGNCC | 5 cut(s) | 21, 315, 550, 719, 720 |
| ClaI | ATCGAT | 1 cut(s) | 84 |
| CpoI | CGGWCCG | 1 cut(s) | 21 |
| CseI | GACGC | 5 cut(s) | 370, 440, 535, 641, 798 |
| CspAI | ACCGGT | 1 cut(s) | 18 |
| CspI | CGGWCCG | 1 cut(s) | 21 |
| CviAII | CATG | 2 cut(s) | 215, 252 |
| DdeI | CTNAG | 7 cut(s) | 29, 63, 93, 281, 359, 533, 693 |
| DpnI | GATC | 2 cut(s) | 422, 735 |
| DpnII | GATC | 2 cut(s) | 420, 733 |
| EaeI | YGGCCR | 1 cut(s) | 346 |
| EagI | CGGCCG | 1 cut(s) | 346 |
| Eam1104I | CTCTTC | 1 cut(s) | 441 |
| EarI | CTCTTC | 1 cut(s) | 441 |
| EciI | GGCGGA | 3 cut(s) | 150, 210, 643 |
| Ecl136II | GAGCTC | 1 cut(s) | 142 |
| EclXI | CGGCCG | 1 cut(s) | 346 |
| Eco105I | TACGTA | 1 cut(s) | 715 |
| Eco130I | CCWWGG | 2 cut(s) | 400, 489 |
| Eco147I | AGGCCT | 2 cut(s) | 459, 686 |
| Eco24I | GRGCYC | 3 cut(s) | 144, 192, 723 |
| Eco31I | GGTCTC | 1 cut(s) | 431 |
| Eco47I | GGWCC | 2 cut(s) | 21, 550 |
| Eco52I | CGGCCG | 1 cut(s) | 346 |
| Eco53kI | GAGCTC | 1 cut(s) | 142 |
| Eco81I | CCTNAGG | 2 cut(s) | 93, 281 |
| Eco88I | CYCGRG | 3 cut(s) | 56, 416, 545 |
| EcoICRI | GAGCTC | 1 cut(s) | 142 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 464 |
| EcoO109I | RGGNCCY | 2 cut(s) | 315, 719 |
| EcoRI | GAATTC | 1 cut(s) | 728 |
| EcoRII | CCWGG | 4 cut(s) | 443, 681, 755, 787 |
| EcoT14I | CCWWGG | 2 cut(s) | 400, 489 |
| EcoT38I | GRGCYC | 3 cut(s) | 144, 192, 723 |
| ErhI | CCWWGG | 2 cut(s) | 400, 489 |
| FaeI | CATG | 2 cut(s) | 218, 255 |
| FaiI | YATR | 4 cut(s) | 216, 253, 702, 782 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 56, 88 |
| FaqI | GGGAC | 2 cut(s) | 644, 773 |
| FatI | CATG | 2 cut(s) | 214, 251 |
| Fnu4HI | GCNGC | 2 cut(s) | 379, 449 |
| FokI | GGATG | 5 cut(s) | 80, 262, 527, 687, 806 |
| FriOI | GRGCYC | 3 cut(s) | 144, 192, 723 |
| Fsp4HI | GCNGC | 2 cut(s) | 379, 449 |
| FspBI | CTAG | 1 cut(s) | 600 |
| GlaI | GCGC | 1 cut(s) | 324 |
| GluI | GCNGC | 2 cut(s) | 379, 449 |
| HaeIII | GGCC | 6 cut(s) | 316, 348, 459, 686, 721, 829 |
| HapII | CCGG | 3 cut(s) | 19, 349, 830 |
| HgaI | GACGC | 5 cut(s) | 370, 440, 535, 641, 798 |
| HhaI | GCGC | 1 cut(s) | 325 |
| Hin1I | GRCGYC | 3 cut(s) | 381, 633, 809 |
| Hin1II | CATG | 2 cut(s) | 218, 255 |
| Hin6I | GCGC | 1 cut(s) | 323 |
| HinP1I | GCGC | 1 cut(s) | 323 |
| HinfI | GANTC | 5 cut(s) | 154, 354, 363, 405, 518 |
| HpaII | CCGG | 3 cut(s) | 19, 349, 830 |
| HphI | GGTGA | 1 cut(s) | 255 |
| Hpy166II | GTNNAC | 1 cut(s) | 263 |
| Hpy188I | TCNGA | 3 cut(s) | 25, 668, 823 |
| Hpy188III | TCNNGA | 3 cut(s) | 133, 428, 560 |
| Hpy8I | GTNNAC | 1 cut(s) | 263 |
| Hpy99I | CGWCG | 4 cut(s) | 396, 434, 728, 808 |
| HpyAV | CCTTC | 5 cut(s) | 82, 111, 460, 490, 810 |
| HpyCH4III | ACNGT | 1 cut(s) | 372 |
| HpyCH4IV | ACGT | 2 cut(s) | 300, 714 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 68, 302, 322, 384, 815 |
| HpyF3I | CTNAG | 7 cut(s) | 29, 63, 93, 281, 359, 533, 693 |
| HpySE526I | ACGT | 2 cut(s) | 300, 714 |
| Hsp92I | GRCGYC | 3 cut(s) | 381, 633, 809 |
| Hsp92II | CATG | 2 cut(s) | 218, 255 |
| HspAI | GCGC | 1 cut(s) | 323 |
| KroI | GCCGGC | 1 cut(s) | 829 |
| KroNI | GCCGGC | 1 cut(s) | 831 |
| Kzo9I | GATC | 2 cut(s) | 420, 733 |
| LguI | GCTCTTC | 1 cut(s) | 441 |
| LmnI | GCTCC | 8 cut(s) | 129, 139, 147, 187, 223, 310, 802, 868 |
| Lsp1109I | GCAGC | 1 cut(s) | 460 |
| LweI | GCATC | 3 cut(s) | 58, 698, 784 |
| MaeI | CTAG | 1 cut(s) | 600 |
| MaeII | ACGT | 2 cut(s) | 300, 714 |
| MaeIII | GTNAC | 1 cut(s) | 595 |
| MalI | GATC | 2 cut(s) | 422, 735 |
| MboI | GATC | 2 cut(s) | 420, 733 |
| MboII | GAAGA | 4 cut(s) | 237, 240, 428, 850 |
| MhlI | GDGCHC | 3 cut(s) | 144, 192, 723 |
| MluCI | AATT | 2 cut(s) | 230, 728 |
| MlyI | GAGTC | 3 cut(s) | 357, 363, 527 |
| MmeI | TCCRAC | 3 cut(s) | 48, 391, 691 |
| MroNI | GCCGGC | 1 cut(s) | 829 |
| MseI | TTAA | 1 cut(s) | 575 |
| MspA1I | CMGCKG | 1 cut(s) | 296 |
| MspI | CCGG | 3 cut(s) | 19, 349, 830 |
| MspR9I | CCNGG | 4 cut(s) | 445, 683, 757, 789 |
| Mva1269I | GAATGC | 2 cut(s) | 11, 241 |
| MvaI | CCWGG | 4 cut(s) | 445, 683, 757, 789 |
| MvnI | CGCG | 1 cut(s) | 561 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 68, 302, 322, 384, 815 |
| NaeI | GCCGGC | 1 cut(s) | 831 |
| NdeII | GATC | 2 cut(s) | 420, 733 |
| NgoMIV | GCCGGC | 1 cut(s) | 829 |
| NlaIII | CATG | 2 cut(s) | 218, 255 |
| NlaIV | GGNNCC | 5 cut(s) | 189, 317, 398, 680, 721 |
| NmeAIII | GCCGAG | 1 cut(s) | 324 |
| NruI | TCGCGA | 1 cut(s) | 561 |
| NspV | TTCGAA | 1 cut(s) | 621 |
| PaeR7I | CTCGAG | 2 cut(s) | 56, 545 |
| PasI | CCCWGGG | 1 cut(s) | 756 |
| PceI | AGGCCT | 2 cut(s) | 459, 686 |
| PciSI | GCTCTTC | 1 cut(s) | 441 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 618, 720 |
| PctI | GAATGC | 2 cut(s) | 11, 241 |
| PdiI | GCCGGC | 1 cut(s) | 831 |
| PfeI | GAWTC | 2 cut(s) | 154, 405 |
| PinAI | ACCGGT | 1 cut(s) | 18 |
| PkrI | GCNGC | 2 cut(s) | 380, 450 |
| Ple19I | CGATCG | 1 cut(s) | 736 |
| PleI | GAGTC | 3 cut(s) | 357, 362, 526 |
| PpsI | GAGTC | 3 cut(s) | 357, 362, 526 |
| Ppu21I | YACGTR | 1 cut(s) | 715 |
| Psp124BI | GAGCTC | 1 cut(s) | 144 |
| Psp6I | CCWGG | 4 cut(s) | 443, 681, 755, 787 |
| PspGI | CCWGG | 4 cut(s) | 443, 681, 755, 787 |
| PspN4I | GGNNCC | 5 cut(s) | 189, 317, 398, 680, 721 |
| PspOMI | GGGCCC | 1 cut(s) | 719 |
| PspPI | GGNCC | 5 cut(s) | 21, 315, 550, 719, 720 |
| PspXI | VCTCGAGB | 2 cut(s) | 56, 545 |
| PvuI | CGATCG | 1 cut(s) | 736 |
| PvuII | CAGCTG | 1 cut(s) | 296 |
| RruI | TCGCGA | 1 cut(s) | 561 |
| Rsr2I | CGGWCCG | 1 cut(s) | 21 |
| RsrII | CGGWCCG | 1 cut(s) | 21 |
| SacI | GAGCTC | 1 cut(s) | 144 |
| SapI | GCTCTTC | 1 cut(s) | 441 |
| SaqAI | TTAA | 1 cut(s) | 575 |
| SatI | GCNGC | 2 cut(s) | 379, 449 |
| Sau3AI | GATC | 2 cut(s) | 420, 733 |
| Sau96I | GGNCC | 5 cut(s) | 21, 315, 550, 719, 720 |
| SchI | GAGTC | 3 cut(s) | 357, 363, 527 |
| ScrFI | CCNGG | 4 cut(s) | 445, 683, 757, 789 |
| SduI | GDGCHC | 3 cut(s) | 144, 192, 723 |
| SfaNI | GCATC | 3 cut(s) | 58, 698, 784 |
| Sfr274I | CTCGAG | 2 cut(s) | 56, 545 |
| SfuI | TTCGAA | 1 cut(s) | 621 |
| SinI | GGWCC | 2 cut(s) | 21, 550 |
| SlaI | CTCGAG | 2 cut(s) | 56, 545 |
| SmlI | CTYRAG | 5 cut(s) | 56, 133, 310, 461, 545 |
| SmoI | CTYRAG | 5 cut(s) | 56, 133, 310, 461, 545 |
| SnaBI | TACGTA | 1 cut(s) | 715 |
| Sse9I | AATT | 2 cut(s) | 230, 728 |
| SseBI | AGGCCT | 2 cut(s) | 459, 686 |
| SsiI | CCGC | 6 cut(s) | 161, 185, 221, 239, 378, 654 |
| SspMI | CTAG | 1 cut(s) | 600 |
| SstI | GAGCTC | 1 cut(s) | 144 |
| StuI | AGGCCT | 2 cut(s) | 459, 686 |
| StyD4I | CCNGG | 4 cut(s) | 443, 681, 755, 787 |
| StyI | CCWWGG | 2 cut(s) | 400, 489 |
| TaaI | ACNGT | 1 cut(s) | 372 |
| TaiI | ACGT | 2 cut(s) | 303, 717 |
| TaqI | TCGA | 8 cut(s) | 57, 84, 272, 411, 429, 546, 621, 732 |
| TaqII | GACCGA | 2 cut(s) | 413, 567 |
| TasI | AATT | 2 cut(s) | 230, 728 |
| TauI | GCSGC | 1 cut(s) | 381 |
| TfiI | GAWTC | 2 cut(s) | 154, 405 |
| Tru1I | TTAA | 1 cut(s) | 575 |
| Tru9I | TTAA | 1 cut(s) | 575 |
| TseI | GCWGC | 1 cut(s) | 448 |
| TspDTI | ATGAA | 4 cut(s) | 240, 428, 656, 851 |
| VpaK11BI | GGWCC | 2 cut(s) | 21, 550 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 464 |
| XapI | RAATTY | 1 cut(s) | 728 |
| XhoI | CTCGAG | 2 cut(s) | 56, 545 |
| XspI | CTAG | 1 cut(s) | 600 |