Rroxscaffold_7G00165660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000480
Physical Location & Seq
Reverse (-)
7353478 .. 7353864
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00165660.1

Sequence Viewer

Length: 387 bp
ATGATGGCGGAGCTAGGTCTCATAGTTGAAGAGAAAGATCGTCAAATAGCACAACCGGAAACCGATCCGGCTTTAGTGACTCAAAGCAAGGATGAGGAATTCGAGAAAGGGGTTGCTCGGATGAAGAGAGTGTACGCCAAGAATTTTCGGCTTGGTTGGAACCAGGCTTTGACTAAGGAGGAAGATAGGTGTTATCCAAGCCTCTACGAGTTCGACCGATACTATGGGTTTACTCCGAGTGGCTACTCTCCTATTCGCATGATTCCGGGGATGACCCATCGCCGGCGTCTAGCTCCGGTGAGGGCCATGGCACCGAGGATGGTGAATTTTTCTGCACCAACAAGTTCTCCGATGCCTAAGTCGGTATGTTTCTCGGTGGTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.73

Weight (kDa)

9.36

Isoelectric Point (pI)

56.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 310
AciI CCGC 1 cut(s) 8
AclWI GGATC 1 cut(s) 59
AcsI RAATTY 3 cut(s) 98, 142, 325
AcyI GRCGYC 1 cut(s) 286
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 1 cut(s) 29
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 2 cut(s) 13, 293
AluI AGCT 2 cut(s) 13, 293
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 1 cut(s) 59
AoxI GGCC 1 cut(s) 303
ApoI RAATTY 3 cut(s) 98, 142, 325
AspS9I GGNCC 1 cut(s) 303
AsuC2I CCSGG 1 cut(s) 267
AsuHPI GGTGA 2 cut(s) 310, 334
BanI GGYRCC 1 cut(s) 310
BarI GAAGNNNNNNTAC 2 cut(s) 116, 148
BccI CCATC 2 cut(s) 285, 313
BciT130I CCWGG 1 cut(s) 164
BcnI CCSGG 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 2 cut(s) 14, 290
Bme1390I CCNGG 2 cut(s) 164, 267
BmgT120I GGNCC 1 cut(s) 303
BmiI GGNNCC 2 cut(s) 161, 312
BmrFI CCNGG 2 cut(s) 164, 267
BmsI GCATC 1 cut(s) 342
BpuMI CCSGG 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 286
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 3 cut(s) 266, 306, 314
BsaWI WCCGGW 2 cut(s) 55, 295
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse118I RCCGGY 1 cut(s) 282
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 3 cut(s) 266, 306, 314
BseGI GGATG 4 cut(s) 97, 126, 276, 324
BseLI CCNNNNNNNGG 1 cut(s) 282
BsgI GTGCAG 1 cut(s) 318
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 1 cut(s) 305
BshNI GGYRCC 1 cut(s) 310
BsiEI CGRYCG 1 cut(s) 217
BsiSI CCGG 5 cut(s) 56, 68, 266, 283, 296
BslI CCNNNNNNNGG 1 cut(s) 282
BsmAI GTCTC 1 cut(s) 23
BsnI GGCC 1 cut(s) 305
Bso31I GGTCTC 1 cut(s) 23
Bsp143I GATC 2 cut(s) 37, 64
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 305
BspLI GGNNCC 2 cut(s) 161, 312
BspPI GGATC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 310
BspTNI GGTCTC 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 282
BssAI RCCGGY 1 cut(s) 282
BssECI CCNNGG 3 cut(s) 266, 306, 314
BssMI GATC 2 cut(s) 37, 64
BssNI GRCGYC 1 cut(s) 286
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 164
Bst6I CTCTTC 2 cut(s) 24, 119
BstACI GRCGYC 1 cut(s) 286
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 2 cut(s) 174, 357
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 4 cut(s) 97, 126, 276, 324
BstKTI GATC 2 cut(s) 40, 67
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 2 cut(s) 37, 64
BstMCI CGRYCG 1 cut(s) 217
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 2 cut(s) 162, 265
BsuRI GGCC 1 cut(s) 305
BtgI CCRYGG 1 cut(s) 306
BtgZI GCGATG 1 cut(s) 263
BtsCI GGATG 4 cut(s) 97, 126, 276, 324
Cac8I GCNNGC 1 cut(s) 284
Cfr10I RCCGGY 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 303
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 133
CviAII CATG 2 cut(s) 259, 307
CviJI RGCY 8 cut(s) 13, 71, 151, 167, 201, 243, 293, 305
CviKI_1 RGCY 8 cut(s) 13, 71, 151, 167, 201, 243, 293, 305
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 174, 357
DpnI GATC 2 cut(s) 39, 66
DpnII GATC 2 cut(s) 37, 64
Eam1104I CTCTTC 2 cut(s) 24, 119
EarI CTCTTC 2 cut(s) 24, 119
EciI GGCGGA 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 2 cut(s) 262, 310
FaiI YATR 5 cut(s) 23, 225, 260, 308, 367
FatI CATG 2 cut(s) 258, 306
FokI GGATG 4 cut(s) 104, 133, 283, 331
FspBI CTAG 2 cut(s) 14, 290
HaeIII GGCC 1 cut(s) 305
HapII CCGG 5 cut(s) 56, 68, 266, 283, 296
HgaI GACGC 1 cut(s) 275
Hin1I GRCGYC 1 cut(s) 286
Hin1II CATG 2 cut(s) 262, 310
HinfI GANTC 2 cut(s) 79, 262
HpaII CCGG 5 cut(s) 56, 68, 266, 283, 296
HphI GGTGA 2 cut(s) 310, 334
Hpy166II GTNNAC 2 cut(s) 133, 231
Hpy188I TCNGA 3 cut(s) 120, 237, 351
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 2 cut(s) 133, 231
HpyCH4V TGCA 1 cut(s) 335
HpyF3I CTNAG 2 cut(s) 174, 357
Hsp92I GRCGYC 1 cut(s) 286
Hsp92II CATG 2 cut(s) 262, 310
KroI GCCGGC 1 cut(s) 282
KroNI GCCGGC 1 cut(s) 284
Kzo9I GATC 2 cut(s) 37, 64
LmnI GCTCC 2 cut(s) 10, 298
LpnPI CCDG 7 cut(s) 69, 81, 149, 176, 279, 296, 309
LweI GCATC 1 cut(s) 342
MaeI CTAG 2 cut(s) 14, 290
MaeIII GTNAC 1 cut(s) 76
MalI GATC 2 cut(s) 39, 66
MboI GATC 2 cut(s) 37, 64
MboII GAAGA 3 cut(s) 41, 136, 194
MluCI AATT 3 cut(s) 98, 142, 325
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 5 cut(s) 88, 172, 212, 294, 309
MreI CGCCGGCG 1 cut(s) 282
MroNI GCCGGC 1 cut(s) 282
MspI CCGG 5 cut(s) 56, 68, 266, 283, 296
MspR9I CCNGG 2 cut(s) 164, 267
MvaI CCWGG 1 cut(s) 164
NaeI GCCGGC 1 cut(s) 284
NciI CCSGG 1 cut(s) 267
NcoI CCATGG 1 cut(s) 306
NdeII GATC 2 cut(s) 37, 64
NgoMIV GCCGGC 1 cut(s) 282
NlaIII CATG 2 cut(s) 262, 310
NlaIV GGNNCC 2 cut(s) 161, 312
NmuCI GTSAC 1 cut(s) 76
PdiI GCCGGC 1 cut(s) 284
PfeI GAWTC 1 cut(s) 262
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 2 cut(s) 161, 312
PspPI GGNCC 1 cut(s) 303
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
Sau3AI GATC 2 cut(s) 37, 64
Sau96I GGNCC 1 cut(s) 303
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 2 cut(s) 164, 267
SetI ASST 4 cut(s) 15, 19, 191, 295
SfaNI GCATC 1 cut(s) 342
SgrAI CRCCGGYG 1 cut(s) 282
Sse9I AATT 3 cut(s) 98, 142, 325
SsiI CCGC 1 cut(s) 8
SspMI CTAG 2 cut(s) 14, 290
StyD4I CCNGG 2 cut(s) 162, 265
StyI CCWWGG 1 cut(s) 306
TaqI TCGA 2 cut(s) 102, 213
TaqII GACCGA 1 cut(s) 231
TasI AATT 3 cut(s) 98, 142, 325
TfiI GAWTC 1 cut(s) 262
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 137
XapI RAATTY 3 cut(s) 98, 142, 325
XspI CTAG 2 cut(s) 14, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.