Rmu_sc0036344.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036344.1
OG0000480
Physical Location & Seq
Reverse (-)
3785 .. 8857
5073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036344.1_g000003.1.cds

Sequence Viewer

Length: 2829 bp
atgttagcccagatcagtcaaaacctgtgtggcaagaagaaaagatctgtgttggaggtgaaaaattccgtagaggagtttgacccaacaattaatgcggactggagcgggaatacaccttgcgacgacgcggcggaggtcattacggcaatcggggcgttgcacgacctggacgacagcgttggtgcccgcttacaatcttcctgccagcgtcgctcttcacctgaatcacctttctggctcgccgatgccgactgctgcgctacgcttaggagatcattgacgacaagaaattgctccactaatcgccttcacagttctcctctaatcacccgcatggctcgcattaagtacacggacttggcgaaatcccaaaagaaaagtccggagccaatcgatgaacctacaccttggaaaccaaccgctcaagaggtagagaaatatgctaaaacgtacgcggtctcaaagttcgtcaaactttcttcgattcctgatgatgccgatatctacactggcgagaatgtgcctggtgataccttgatattgtctctttcgcatcttaggtttatcagttttccaattcaccctgttttccaactagtgtggagggtccttggcttgcacccaatgcaacttcacccgaatgcttatcttttcttgtcttctttcttgatcatgggttggaaatggggtgtttccctgggtttatcagattttcttcatcttttcaactgtgtcagaacaggcaagcttcgatatttcaacttttctccatacccgaagatgaagatatttgcaggcgtgccgattagtcatccgggatggaggtccaaagccttgatgatctctggcaaatggcggtctccagaattggaccttttgcctccagctgctttcgctgatgaccttgctaagattgatcttccctctggtcgtgtagcatggttggaaagccatcttgttgggggtgactggtgcccttcccaattcgtaactatcgggaatttagcagaggtcgcatctgttcggccttcagccctgtttggtcgttatcgagagcctgtggattctacactctcagggagagagttggcgctccgcgttgcccagattgagagcgttttttccaggtctgaatgttgtgaggctttgtttgctacatatgcggaagtaaaaagtgatttccgcgccaccatcccttgtccagacgccaccgtcacggagggatatggtgtggagggaaacttggacgaagaagaagaatttcaggttaatacaatagaagaagagcctttgttgcatgcagtgagagatctccctcacacgattcctccccctcgaagatttaagaaacgtaaggcagaaaatcttgtcaatggctccgaatcatcctatctttccgcagaagagttggcgcaagatacgttaccgcctcctctcgcacgtggtgattcatcctttacacaacttctccaacccttgttggaaactgcccgtgacgcatctgcacaaaacgtcattctgccacaagctaatcctcctgcctcgaattccccctcgtcatccaggatcctggaattgagctttaaaaagcgcgacagctcctttgttctggcggaagagccccttctttctaacgggccagccgcgtcggcagtggctgccacctttgcctcgttgaagcctattccggggccgttccccaaaagtcctatggacttttataatgacttgtgtgcctctcagctcgatgctcttatggcgtctcaccagttcttgcgtagtcttgatggtctccattccaaacaacagcaaaagttggaggatgtcaactctcaactgaaggacaaagaccgccaacttctagccaaggaacatgaaattgaggagcagtcccaagtgatggcagagctaggtctcattgttgaagagaaaaaccatcagatagcgcaactgaaaaccgagctggccgtagtgatgcaaagcaaggacgaggaataccaaaagggagttgctcagataaaaagagtttccgccaagaatttccggcttggttggaaccaagccttgacgaaagaggaggacaggtgttatcctagtcccgacgagtttgaccgatattacgggttcattccgagtggctattctcctattcggggcatgattccgggggacgtcccatcgccagtgtctagtggcagtgagggtcatggcattgatgatggtcgcggcaagcaagttgttgtcactaacgaacattcccttgactgccggtcacctactcctattacgattccgtcttacaagttttctaataggtctgattcgcgtgccggtgaatttctatttgaagatagcgctcttcagagttctaaggacgtaccgaaccgtacctgcgacattgaatgctatgcaccttttgcctcgaggtccgacattggcgcgagtcgctctcgccgacgcagcttaagctccgatagggtcaaaacctctgagtcatgtcgcctcggagccctccgggaggagtcttttgtcctacaagactcactcgatcgtgcaatgtcggaggtctatagcttgaaagcagaagtccgagatctgtcggcagaggttaagcgttcgagagatcatgctgaaagtctaaaactggaaccccgtgagtgctatcgtcgagaaaggttcctcgacgaggttcgcgttcaaagccgcgaagacggttaccgtgatgcagtcattgagtatcgtcagaggatgatattgaatttccccggtatcgacacatctctgctgccatattacgttggtcccgacggtgccccgcggtcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

942

Amino Acids

105.1

Weight (kDa)

5.79

Isoelectric Point (pI)

58.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1725
AasI GACNNNNNNGTC 1 cut(s) 1214
AatII GACGTC 1 cut(s) 2178
AbsI CCTCGAGG 1 cut(s) 2425
Acc36I ACCTGC 1 cut(s) 2402
AccB1I GGYRCC 3 cut(s) 185, 975, 2813
AccB7I CCANNNNNTGG 1 cut(s) 1903
AccBSI CCGCTC 2 cut(s) 108, 425
AccIII TCCGGA 1 cut(s) 385
AclWI GGATC 2 cut(s) 1564, 1577
AcoI YGGCCR 1 cut(s) 1968
AcsI RAATTY 7 cut(s) 64, 1003, 1262, 1549, 2041, 2339, 2761
AcuI CTGAAG 3 cut(s) 1017, 1862, 2348
AcvI CACGTG 1 cut(s) 1445
AcyI GRCGYC 3 cut(s) 1209, 1763, 2175
AdeI CACNNNGTG 1 cut(s) 1448
AfaI GTAC 4 cut(s) 353, 455, 2382, 2392
AfeI AGCGCT 1 cut(s) 2359
AfiI CCNNNNNNNGG 5 cut(s) 1691, 1903, 2156, 2521, 2689
AflII CTTAAG 1 cut(s) 2467
AgsI TTSAA 9 cut(s) 730, 763, 1681, 1928, 2351, 2405, 2581, 2702, 2761
AhdI GACNNNNNGTC 1 cut(s) 2272
AhlI ACTAGT 1 cut(s) 598
AjnI CCWGG 6 cut(s) 168, 526, 699, 1127, 1565, 1572
Alw26I GTCTC 6 cut(s) 466, 552, 867, 1770, 1799, 1922
AlwI GGATC 2 cut(s) 1564, 1577
AlwNI CAGNNNCTG 1 cut(s) 1661
Ama87I CYCGRG 1 cut(s) 2425
Aor13HI TCCGGA 1 cut(s) 385
Aor51HI AGCGCT 1 cut(s) 2359
AoxI GGCC 4 cut(s) 1028, 1640, 1694, 1968
ApeKI GCWGC 5 cut(s) 258, 890, 1661, 2463, 2788
ApoI RAATTY 7 cut(s) 64, 1003, 1262, 1549, 2041, 2339, 2761
ArsI GACNNNNNNTTYG 4 cut(s) 367, 399, 1589, 1621
AseI ATTAAT 1 cut(s) 93
Asp700I GAANNNNTTC 1 cut(s) 1263
AspLEI GCGC 8 cut(s) 263, 1096, 1190, 1417, 1596, 1951, 2360, 2444
AspS9I GGNCC 7 cut(s) 610, 828, 874, 1640, 1694, 2430, 2804
AsuC2I CCSGG 5 cut(s) 819, 1692, 2169, 2519, 2769
AvaI CYCGRG 1 cut(s) 2425
AvaII GGWCC 5 cut(s) 610, 828, 874, 2430, 2804
BaeGI GKGCMC 3 cut(s) 190, 980, 2818
BamHI GGATCC 1 cut(s) 1569
BanI GGYRCC 3 cut(s) 185, 975, 2813
BanII GRGCYC 2 cut(s) 1626, 2515
BbrPI CACGTG 1 cut(s) 1445
BbsI GAAGAC 2 cut(s) 654, 2718
BbvI GCAGC 5 cut(s) 245, 877, 1648, 2475, 2775
BccI CCATC 8 cut(s) 816, 963, 1202, 1784, 1897, 1947, 2188, 2216
BceAI ACGGC 3 cut(s) 162, 1681, 1955
BciT130I CCWGG 6 cut(s) 170, 528, 701, 1129, 1567, 1574
BclI TGATCA 1 cut(s) 672
BcnI CCSGG 5 cut(s) 819, 1692, 2169, 2519, 2769
BcoDI GTCTC 6 cut(s) 466, 552, 867, 1770, 1799, 1922
BcuI ACTAGT 1 cut(s) 598
BfaI CTAG 5 cut(s) 599, 1865, 1913, 2097, 2193
BfmI CTRYAG 1 cut(s) 2572
BfoI RGCGCY 2 cut(s) 1097, 2361
BfrI CTTAAG 1 cut(s) 2467
BfuAI ACCTGC 1 cut(s) 2402
BglI GCCNNNNNGGC 1 cut(s) 1652
BglII AGATCT 3 cut(s) 44, 1312, 2596
BisI GCNGC 9 cut(s) 132, 259, 891, 1647, 1662, 2230, 2464, 2707, 2789
BlsI GCNGC 9 cut(s) 133, 260, 892, 1648, 1663, 2231, 2465, 2708, 2790
Bme18I GGWCC 5 cut(s) 610, 828, 874, 2430, 2804
BmeRI GACNNNNNGTC 1 cut(s) 2272
BmeT110I CYCGRG 1 cut(s) 2425
BmgT120I GGNCC 7 cut(s) 610, 828, 874, 1640, 1694, 2430, 2804
BmsI GCATC 8 cut(s) 238, 487, 565, 1028, 1511, 1741, 1968, 2716
BpiI GAAGAC 2 cut(s) 654, 2718
BplI GAGNNNNNCTC 2 cut(s) 2437, 2469
BpmI CTGGAG 3 cut(s) 124, 849, 870
Bpu10I CCTNAGC 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 411
BpuMI CCSGG 5 cut(s) 819, 1692, 2169, 2519, 2769
Bsa29I ATCGAT 1 cut(s) 396
BsaAI YACGTR 1 cut(s) 1445
BsaHI GRCGYC 3 cut(s) 1209, 1763, 2175
BsaI GGTCTC 4 cut(s) 466, 867, 1799, 1922
BsaWI WCCGGW 1 cut(s) 385
BsaXI ACNNNNNCTCC 6 cut(s) 1315, 1345, 1455, 1485, 2072, 2102
Bsc4I CCNNNNNNNGG 5 cut(s) 1691, 1903, 2156, 2521, 2689
Bse118I RCCGGY 2 cut(s) 2271, 2333
Bse1I ACTGG 6 cut(s) 107, 517, 977, 1771, 2186, 2652
Bse3DI GCAATG 1 cut(s) 2565
BseAI TCCGGA 1 cut(s) 385
BseBI CCWGG 6 cut(s) 170, 528, 701, 1129, 1567, 1574
BseCI ATCGAT 1 cut(s) 396
BseGI GGATG 8 cut(s) 814, 827, 1194, 1388, 1454, 1562, 1831, 2757
BseLI CCNNNNNNNGG 5 cut(s) 1691, 1903, 2156, 2521, 2689
BseMI GCAATG 1 cut(s) 2565
BseMII CTCAG 4 cut(s) 1092, 1757, 2030, 2484
BseNI ACTGG 6 cut(s) 107, 517, 977, 1771, 2186, 2652
BseRI GAGGAG 6 cut(s) 89, 312, 1425, 1901, 2093, 2537
BseSI GKGCMC 3 cut(s) 190, 980, 2818
BseXI GCAGC 5 cut(s) 245, 877, 1648, 2475, 2775
BsgI GTGCAG 1 cut(s) 1491
Bsh1285I CGRYCG 1 cut(s) 2554
BshFI GGCC 4 cut(s) 1030, 1642, 1696, 1970
BshNI GGYRCC 3 cut(s) 185, 975, 2813
BshVI ATCGAT 1 cut(s) 396
BsiEI CGRYCG 1 cut(s) 2554
BsiHKCI CYCGRG 1 cut(s) 2425
BsiSI CCGG 9 cut(s) 386, 818, 1691, 2047, 2168, 2272, 2334, 2518, 2769
BsiWI CGTACG 1 cut(s) 453
BslFI GGGAC 5 cut(s) 1879, 2085, 2162, 2186, 2790
BslI CCNNNNNNNGG 5 cut(s) 1691, 1903, 2156, 2521, 2689
BsmAI GTCTC 6 cut(s) 466, 552, 867, 1770, 1799, 1922
BsmBI CGTCTC 1 cut(s) 1770
BsmFI GGGAC 5 cut(s) 1879, 2085, 2162, 2186, 2790
BsmI GAATGC 2 cut(s) 649, 2411
BsnI GGCC 4 cut(s) 1030, 1642, 1696, 1970
Bso31I GGTCTC 4 cut(s) 466, 867, 1799, 1922
BsoBI CYCGRG 1 cut(s) 2425
Bsp1286I GDGCHC 5 cut(s) 190, 980, 1626, 2515, 2818
Bsp13I TCCGGA 1 cut(s) 385
BspANI GGCC 4 cut(s) 1030, 1642, 1696, 1970
BspCNI CTCAG 4 cut(s) 1091, 1756, 2029, 2485
BspDI ATCGAT 1 cut(s) 396
BspEI TCCGGA 1 cut(s) 385
BspHI TCATGA 1 cut(s) 2825
BspMI ACCTGC 1 cut(s) 2402
BspPI GGATC 2 cut(s) 1564, 1577
BspQI GCTCTTC 4 cut(s) 223, 1281, 1614, 2367
BspT107I GGYRCC 3 cut(s) 185, 975, 2813
BspTI CTTAAG 1 cut(s) 2467
BspTNI GGTCTC 4 cut(s) 466, 867, 1799, 1922
BsrBI CCGCTC 2 cut(s) 108, 425
BsrDI GCAATG 1 cut(s) 2565
BsrFI RCCGGY 2 cut(s) 2271, 2333
BsrI ACTGG 6 cut(s) 107, 517, 977, 1771, 2186, 2652
BssAI RCCGGY 2 cut(s) 2271, 2333
BssNI GRCGYC 3 cut(s) 1209, 1763, 2175
BssT1I CCWWGG 3 cut(s) 410, 613, 1869
Bst2UI CCWGG 6 cut(s) 170, 528, 701, 1129, 1567, 1574
Bst4CI ACNGT 7 cut(s) 317, 734, 1216, 2390, 2717, 2723, 2813
Bst6I CTCTTC 6 cut(s) 223, 1281, 1401, 1614, 1923, 2367
BstACI GRCGYC 3 cut(s) 1209, 1763, 2175
BstAFI CTTAAG 1 cut(s) 2467
BstAPI GCANNNNNTGC 3 cut(s) 628, 1661, 2420
BstBAI YACGTR 1 cut(s) 1445
BstDEI CTNAG 8 cut(s) 269, 560, 912, 1078, 1743, 2016, 2373, 2493
BstDSI CCRYGG 1 cut(s) 2819
BstEII GGTNACC 2 cut(s) 2274, 2717
BstENI CCTNNNNNAGG 2 cut(s) 2519, 2687
BstF5I GGATG 8 cut(s) 814, 827, 1194, 1388, 1454, 1562, 1831, 2757
BstH2I RGCGCY 2 cut(s) 1097, 2361
BstHHI GCGC 8 cut(s) 263, 1096, 1190, 1417, 1596, 1951, 2360, 2444
BstMAI GTCTC 6 cut(s) 466, 552, 867, 1770, 1799, 1922
BstMCI CGRYCG 1 cut(s) 2554
BstNI CCWGG 6 cut(s) 170, 528, 701, 1129, 1567, 1574
BstNSI RCATGY 1 cut(s) 1304
BstPI GGTNACC 2 cut(s) 2274, 2717
BstSFI CTRYAG 1 cut(s) 2572
BstSLI GKGCMC 3 cut(s) 190, 980, 2818
BstV1I GCAGC 5 cut(s) 245, 877, 1648, 2475, 2775
BstV2I GAAGAC 2 cut(s) 654, 2718
BstX2I RGATCY 4 cut(s) 44, 1312, 1569, 2596
BstXI CCANNNNNNTGG 2 cut(s) 962, 1573
BstYI RGATCY 4 cut(s) 44, 1312, 1569, 2596
Bsu15I ATCGAT 1 cut(s) 396
BsuRI GGCC 4 cut(s) 1030, 1642, 1696, 1970
BsuTUI ATCGAT 1 cut(s) 396
BtgI CCRYGG 1 cut(s) 2819
BtgZI GCGATG 1 cut(s) 2166
BtsCI GGATG 8 cut(s) 814, 827, 1194, 1388, 1454, 1562, 1831, 2757
BtsI GCAGTG 3 cut(s) 1311, 1662, 2206
BtsIMutI CAGTG 5 cut(s) 510, 1311, 1662, 2193, 2206
BveI ACCTGC 1 cut(s) 2402
CaiI CAGNNNCTG 1 cut(s) 1661
CciI TCATGA 1 cut(s) 2825
CfoI GCGC 8 cut(s) 263, 1096, 1190, 1417, 1596, 1951, 2360, 2444
Cfr10I RCCGGY 2 cut(s) 2271, 2333
Cfr13I GGNCC 7 cut(s) 610, 828, 874, 1640, 1694, 2430, 2804
Cfr42I CCGCGG 1 cut(s) 2822
ClaI ATCGAT 1 cut(s) 396
CseI GACGC 7 cut(s) 137, 200, 1217, 1508, 1638, 1752, 2469
Csp6I GTAC 4 cut(s) 352, 454, 2381, 2391
CspCI CAANNNNNGTGG 2 cut(s) 584, 619
CviQI GTAC 4 cut(s) 352, 454, 2381, 2391
DdeI CTNAG 8 cut(s) 269, 560, 912, 1078, 1743, 2016, 2373, 2493
DraI TTTAAA 1 cut(s) 1588
DraIII CACNNNGTG 1 cut(s) 1448
DrdI GACNNNNNNGTC 1 cut(s) 1214
DriI GACNNNNNGTC 1 cut(s) 2272
DseDI GACNNNNNNGTC 1 cut(s) 1214
EaeI YGGCCR 1 cut(s) 1968
Eam1104I CTCTTC 6 cut(s) 223, 1281, 1401, 1614, 1923, 2367
Eam1105I GACNNNNNGTC 1 cut(s) 2272
EarI CTCTTC 6 cut(s) 223, 1281, 1401, 1614, 1923, 2367
EciI GGCGGA 3 cut(s) 149, 1631, 2023
Eco130I CCWWGG 3 cut(s) 410, 613, 1869
Eco24I GRGCYC 2 cut(s) 1626, 2515
Eco31I GGTCTC 4 cut(s) 466, 867, 1799, 1922
Eco32I GATATC 1 cut(s) 505
Eco47I GGWCC 5 cut(s) 610, 828, 874, 2430, 2804
Eco47III AGCGCT 1 cut(s) 2359
Eco57I CTGAAG 3 cut(s) 1017, 1862, 2348
Eco72I CACGTG 1 cut(s) 1445
Eco88I CYCGRG 1 cut(s) 2425
Eco91I GGTNACC 2 cut(s) 2274, 2717
EcoNI CCTNNNNNAGG 2 cut(s) 2519, 2687
EcoO109I RGGNCCY 1 cut(s) 610
EcoO65I GGTNACC 2 cut(s) 2274, 2717
EcoRI GAATTC 1 cut(s) 1549
EcoRII CCWGG 6 cut(s) 168, 526, 699, 1127, 1565, 1572
EcoRV GATATC 1 cut(s) 505
EcoT14I CCWWGG 3 cut(s) 410, 613, 1869
EcoT38I GRGCYC 2 cut(s) 1626, 2515
ErhI CCWWGG 3 cut(s) 410, 613, 1869
Esp3I CGTCTC 1 cut(s) 1770
FalI AAGNNNNNCTT 2 cut(s) 1611, 1643
FaqI GGGAC 5 cut(s) 1879, 2085, 2162, 2186, 2790
FauI CCCGC 4 cut(s) 101, 197, 341, 2826
FauNDI CATATG 1 cut(s) 1162
FbaI TGATCA 1 cut(s) 672
Fnu4HI GCNGC 9 cut(s) 132, 259, 891, 1647, 1662, 2230, 2464, 2707, 2789
FokI GGATG 8 cut(s) 801, 834, 1181, 1375, 1441, 1549, 1838, 2764
FriOI GRGCYC 2 cut(s) 1626, 2515
Fsp4HI GCNGC 9 cut(s) 132, 259, 891, 1647, 1662, 2230, 2464, 2707, 2789
FspBI CTAG 5 cut(s) 599, 1865, 1913, 2097, 2193
GlaI GCGC 8 cut(s) 262, 1095, 1189, 1416, 1595, 1950, 2359, 2443
GluI GCNGC 9 cut(s) 132, 259, 891, 1647, 1662, 2230, 2464, 2707, 2789
GsuI CTGGAG 3 cut(s) 124, 849, 870
HaeII RGCGCY 2 cut(s) 1097, 2361
HaeIII GGCC 4 cut(s) 1030, 1642, 1696, 1970
HapII CCGG 9 cut(s) 386, 818, 1691, 2047, 2168, 2272, 2334, 2518, 2769
HgaI GACGC 7 cut(s) 137, 200, 1217, 1508, 1638, 1752, 2469
HhaI GCGC 8 cut(s) 263, 1096, 1190, 1417, 1596, 1951, 2360, 2444
Hin1I GRCGYC 3 cut(s) 1209, 1763, 2175
Hin6I GCGC 8 cut(s) 261, 1094, 1188, 1415, 1594, 1949, 2358, 2442
HinP1I GCGC 8 cut(s) 261, 1094, 1188, 1415, 1594, 1949, 2358, 2442
HincII GTYRAC 1 cut(s) 1831
HindII GTYRAC 1 cut(s) 1831
HindIII AAGCTT 1 cut(s) 749
HpaII CCGG 9 cut(s) 386, 818, 1691, 2047, 2168, 2272, 2334, 2518, 2769
Hpy166II GTNNAC 2 cut(s) 354, 1831
Hpy8I GTNNAC 2 cut(s) 354, 1831
Hpy99I CGWCG 9 cut(s) 128, 131, 216, 1654, 2108, 2463, 2673, 2690, 2813
HpyAV CCTTC 5 cut(s) 320, 990, 1041, 1637, 1837
HpyCH4III ACNGT 7 cut(s) 317, 734, 1216, 2390, 2717, 2723, 2813
HpyCH4IV ACGT 8 cut(s) 452, 1354, 1424, 1444, 1515, 2175, 2379, 2799
HpyF3I CTNAG 8 cut(s) 269, 560, 912, 1078, 1743, 2016, 2373, 2493
HpySE526I ACGT 8 cut(s) 452, 1354, 1424, 1444, 1515, 2175, 2379, 2799
Hsp92I GRCGYC 3 cut(s) 1209, 1763, 2175
HspAI GCGC 8 cut(s) 261, 1094, 1188, 1415, 1594, 1949, 2358, 2442
Kpn2I TCCGGA 1 cut(s) 385
Ksp22I TGATCA 1 cut(s) 672
KspI CCGCGG 1 cut(s) 2822
LguI GCTCTTC 4 cut(s) 223, 1281, 1614, 2367
LmnI GCTCC 9 cut(s) 105, 302, 388, 1101, 1385, 1607, 1888, 2477, 2510
Lsp1109I GCAGC 5 cut(s) 245, 877, 1648, 2475, 2775
LweI GCATC 8 cut(s) 238, 487, 565, 1028, 1511, 1741, 1968, 2716
MaeI CTAG 5 cut(s) 599, 1865, 1913, 2097, 2193
MaeII ACGT 8 cut(s) 452, 1354, 1424, 1444, 1515, 2175, 2379, 2799
MaeIII GTNAC 8 cut(s) 968, 991, 1216, 1425, 1496, 2245, 2274, 2717
MbiI CCGCTC 2 cut(s) 108, 425
MflI RGATCY 4 cut(s) 44, 1312, 1569, 2596
MhlI GDGCHC 5 cut(s) 190, 980, 1626, 2515, 2818
MlyI GAGTC 4 cut(s) 2455, 2504, 2534, 2537
MroI TCCGGA 1 cut(s) 385
MroXI GAANNNNTTC 1 cut(s) 1263
MseI TTAA 7 cut(s) 93, 348, 1272, 1347, 1587, 2468, 2613
MslI CAYNNNNRTG 2 cut(s) 335, 642
MspA1I CMGCKG 2 cut(s) 890, 2821
MspCI CTTAAG 1 cut(s) 2467
MspI CCGG 9 cut(s) 386, 818, 1691, 2047, 2168, 2272, 2334, 2518, 2769
Mva1269I GAATGC 2 cut(s) 649, 2411
MvaI CCWGG 6 cut(s) 170, 528, 701, 1129, 1567, 1574
NciI CCSGG 5 cut(s) 819, 1692, 2169, 2519, 2769
NdeI CATATG 1 cut(s) 1162
NmuCI GTSAC 5 cut(s) 968, 1216, 1496, 2245, 2274
NspI RCATGY 1 cut(s) 1304
PaeI GCATGC 1 cut(s) 1304
PaeR7I CTCGAG 1 cut(s) 2425
PagI TCATGA 1 cut(s) 2825
PasI CCCWGGG 1 cut(s) 700
PciSI GCTCTTC 4 cut(s) 223, 1281, 1614, 2367
PcsI WCGNNNNNNNCGW 6 cut(s) 171, 249, 362, 2455, 2694, 2805
PctI GAATGC 2 cut(s) 649, 2411
PdmI GAANNNNTTC 1 cut(s) 1263
PfeI GAWTC 9 cut(s) 227, 487, 1067, 1327, 1385, 1451, 2164, 2293, 2324
Pfl23II CGTACG 1 cut(s) 453
PflMI CCANNNNNTGG 1 cut(s) 1903
PfoI TCCNGGA 4 cut(s) 817, 1565, 1572, 2517
PkrI GCNGC 9 cut(s) 133, 260, 892, 1648, 1663, 2231, 2465, 2708, 2790
Ple19I CGATCG 1 cut(s) 2554
PleI GAGTC 4 cut(s) 2454, 2503, 2533, 2537
PmaCI CACGTG 1 cut(s) 1445
PmlI CACGTG 1 cut(s) 1445
PpsI GAGTC 4 cut(s) 2454, 2503, 2533, 2537
Ppu21I YACGTR 1 cut(s) 1445
PpuMI RGGWCCY 1 cut(s) 610
PshBI ATTAAT 1 cut(s) 93
PsiI TTATAA 1 cut(s) 1725
Psp5II RGGWCCY 1 cut(s) 610
Psp6I CCWGG 6 cut(s) 168, 526, 699, 1127, 1565, 1572
PspCI CACGTG 1 cut(s) 1445
PspEI GGTNACC 2 cut(s) 2274, 2717
PspGI CCWGG 6 cut(s) 168, 526, 699, 1127, 1565, 1572
PspLI CGTACG 1 cut(s) 453
PspPI GGNCC 7 cut(s) 610, 828, 874, 1640, 1694, 2430, 2804
PspPPI RGGWCCY 1 cut(s) 610
PspXI VCTCGAGB 1 cut(s) 2425
PstNI CAGNNNCTG 1 cut(s) 1661
PsuI RGATCY 4 cut(s) 44, 1312, 1569, 2596
PvuI CGATCG 1 cut(s) 2554
PvuII CAGCTG 1 cut(s) 890
RsaI GTAC 4 cut(s) 353, 455, 2382, 2392
RsaNI GTAC 4 cut(s) 352, 454, 2381, 2391
RseI CAYNNNNRTG 2 cut(s) 335, 642
SacII CCGCGG 1 cut(s) 2822
SapI GCTCTTC 4 cut(s) 223, 1281, 1614, 2367
SaqAI TTAA 7 cut(s) 93, 348, 1272, 1347, 1587, 2468, 2613
SatI GCNGC 9 cut(s) 132, 259, 891, 1647, 1662, 2230, 2464, 2707, 2789
Sau96I GGNCC 7 cut(s) 610, 828, 874, 1640, 1694, 2430, 2804
SchI GAGTC 4 cut(s) 2455, 2504, 2534, 2537
SduI GDGCHC 5 cut(s) 190, 980, 1626, 2515, 2818
SfaNI GCATC 8 cut(s) 238, 487, 565, 1028, 1511, 1741, 1968, 2716
SfcI CTRYAG 1 cut(s) 2572
Sfr274I CTCGAG 1 cut(s) 2425
Sfr303I CCGCGG 1 cut(s) 2822
SgrBI CCGCGG 1 cut(s) 2822
SinI GGWCC 5 cut(s) 610, 828, 874, 2430, 2804
SlaI CTCGAG 1 cut(s) 2425
SmiMI CAYNNNNRTG 2 cut(s) 335, 642
SmlI CTYRAG 3 cut(s) 426, 2425, 2467
SmoI CTYRAG 3 cut(s) 426, 2425, 2467
SpeI ACTAGT 1 cut(s) 598
SphI GCATGC 1 cut(s) 1304
SspMI CTAG 5 cut(s) 599, 1865, 1913, 2097, 2193
StyI CCWWGG 3 cut(s) 410, 613, 1869
TaaI ACNGT 7 cut(s) 317, 734, 1216, 2390, 2717, 2723, 2813
TaiI ACGT 8 cut(s) 455, 1357, 1427, 1447, 1518, 2178, 2382, 2802
TaqII GACCGA 1 cut(s) 2130
TatI WGTACW 1 cut(s) 351
TauI GCSGC 4 cut(s) 134, 1649, 2232, 2709
TfiI GAWTC 9 cut(s) 227, 487, 1067, 1327, 1385, 1451, 2164, 2293, 2324
Tru1I TTAA 7 cut(s) 93, 348, 1272, 1347, 1587, 2468, 2613
Tru9I TTAA 7 cut(s) 93, 348, 1272, 1347, 1587, 2468, 2613
TscAI CASTG 5 cut(s) 517, 1311, 1662, 2193, 2206
TseFI GTSAC 5 cut(s) 968, 1216, 1496, 2245, 2274
TseI GCWGC 5 cut(s) 258, 890, 1661, 2463, 2788
Tsp45I GTSAC 5 cut(s) 968, 1216, 1496, 2245, 2274
TspDTI ATGAA 6 cut(s) 414, 710, 800, 1443, 1893, 2119
TspGWI ACGGA 4 cut(s) 58, 371, 1235, 2286
TspRI CASTG 5 cut(s) 517, 1311, 1662, 2193, 2206
Van91I CCANNNNNTGG 1 cut(s) 1903
Vha464I CTTAAG 1 cut(s) 2467
VpaK11BI GGWCC 5 cut(s) 610, 828, 874, 2430, 2804
VspI ATTAAT 1 cut(s) 93
XagI CCTNNNNNAGG 2 cut(s) 2519, 2687
XapI RAATTY 7 cut(s) 64, 1003, 1262, 1549, 2041, 2339, 2761
XceI RCATGY 1 cut(s) 1304
XcmI CCANNNNNNNNNTGG 1 cut(s) 1711
XhoI CTCGAG 1 cut(s) 2425
XmnI GAANNNNTTC 1 cut(s) 1263
XspI CTAG 5 cut(s) 599, 1865, 1913, 2097, 2193
ZraI GACGTC 1 cut(s) 2176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.