Rmu_sc0005599.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005599.1
OG0000480
Physical Location & Seq
Reverse (-)
55025 .. 55549
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005599.1_g000015.1.cds

Sequence Viewer

Length: 525 bp
atggcacgcatcaaattttccgatttatctgtatctcagaacgggagcctggagacccatagagaacccacgccttggcaaccgacgcattcgattctagagaagtgcgctgaggtgtattctatcccatcattggttaaactttcaattgttcccgcagatgcagatatctacacgggtaggaatattcccgacgatgccttgatactgtctcctgagcatttacgttatgtcaggttccccatccatcctgtatttcaacttatgtgggctgtgctcggtctgcatcctcttcaacttaacccaaattcctacctcgtcttgtctgcttttttgattatgggtttgaaatgggaagtatccctagggctgtctgattttctttatctttacaattgcgccaagatgaacaaacattttcggtatttcaatttcacacctttcccaaaaatgaaggtgtttacagggatttccgctcacgacaacgattggaaatctagggccctgatgattttgggtgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.94

Weight (kDa)

7.83

Isoelectric Point (pI)

28.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 75
AccBSI CCGCTC 1 cut(s) 476
AciI CCGC 2 cut(s) 156, 474
AcsI RAATTY 2 cut(s) 14, 307
AfiI CCNNNNNNNGG 2 cut(s) 75, 133
AgsI TTSAA 5 cut(s) 147, 260, 296, 349, 430
AjnI CCWGG 1 cut(s) 48
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 2 cut(s) 47, 216
AoxI GGCC 1 cut(s) 501
ApaI GGGCCC 1 cut(s) 505
ApoI RAATTY 2 cut(s) 14, 307
AspA2I CCTAGG 1 cut(s) 364
AspLEI GCGC 2 cut(s) 110, 401
AspS9I GGNCC 2 cut(s) 501, 502
AvrII CCTAGG 1 cut(s) 364
BaeGI GKGCMC 1 cut(s) 505
BanII GRGCYC 1 cut(s) 505
Bbv12I GWGCWC 1 cut(s) 279
BbvCI CCTCAGC 1 cut(s) 111
BccI CCATC 3 cut(s) 136, 251, 255
BciT130I CCWGG 1 cut(s) 50
BciVI GTATCC 1 cut(s) 370
BcoDI GTCTC 2 cut(s) 47, 216
BfaI CTAG 3 cut(s) 98, 365, 498
BfuI GTATCC 1 cut(s) 370
BlnI CCTAGG 1 cut(s) 364
Bme1390I CCNGG 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 501, 502
BmiI GGNNCC 3 cut(s) 47, 239, 503
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 4 cut(s) 18, 151, 187, 295
BpmI CTGGAG 1 cut(s) 71
Bpu10I CCTNAGC 2 cut(s) 111, 216
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 74, 364
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 133
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 2 cut(s) 74, 364
BseGI GGATG 3 cut(s) 243, 247, 286
BseLI CCNNNNNNNGG 2 cut(s) 75, 133
BseMII CTCAG 3 cut(s) 50, 102, 207
BseSI GKGCMC 1 cut(s) 505
BshFI GGCC 1 cut(s) 503
BsiHKAI GWGCWC 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 75, 133
BsmAI GTCTC 2 cut(s) 47, 216
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 1 cut(s) 503
Bso31I GGTCTC 1 cut(s) 47
Bsp120I GGGCCC 1 cut(s) 501
Bsp1286I GDGCHC 2 cut(s) 279, 505
BspACI CCGC 2 cut(s) 156, 474
BspANI GGCC 1 cut(s) 503
BspCNI CTCAG 3 cut(s) 49, 103, 208
BspLI GGNNCC 3 cut(s) 47, 239, 503
BspTNI GGTCTC 1 cut(s) 47
BsrBI CCGCTC 1 cut(s) 476
BssECI CCNNGG 2 cut(s) 74, 364
BssT1I CCWWGG 2 cut(s) 74, 364
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 36, 111, 216
BstF5I GGATG 3 cut(s) 243, 247, 286
BstHHI GCGC 2 cut(s) 110, 401
BstMAI GTCTC 2 cut(s) 47, 216
BstMWI GCNNNNNNNGC 2 cut(s) 85, 283
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstSLI GKGCMC 1 cut(s) 505
BsuI GTATCC 1 cut(s) 370
BsuRI GGCC 1 cut(s) 503
BtsCI GGATG 3 cut(s) 243, 247, 286
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 2 cut(s) 110, 401
Cfr13I GGNCC 2 cut(s) 501, 502
CseI GACGC 1 cut(s) 94
CspCI CAANNNNNGTGG 2 cut(s) 248, 283
CviJI RGCY 4 cut(s) 48, 272, 370, 503
CviKI_1 RGCY 4 cut(s) 48, 272, 370, 503
DdeI CTNAG 3 cut(s) 36, 111, 216
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco130I CCWWGG 2 cut(s) 74, 364
Eco24I GRGCYC 1 cut(s) 505
Eco31I GGTCTC 1 cut(s) 47
Eco32I GATATC 1 cut(s) 169
EcoO109I RGGNCCY 2 cut(s) 501, 502
EcoRII CCWGG 1 cut(s) 48
EcoRV GATATC 1 cut(s) 169
EcoT14I CCWWGG 2 cut(s) 74, 364
EcoT38I GRGCYC 1 cut(s) 505
ErhI CCWWGG 2 cut(s) 74, 364
FaiI YATR 4 cut(s) 60, 231, 266, 341
FauI CCCGC 1 cut(s) 163
FokI GGATG 3 cut(s) 230, 234, 273
FriOI GRGCYC 1 cut(s) 505
FspBI CTAG 3 cut(s) 98, 365, 498
GlaI GCGC 2 cut(s) 109, 400
GsuI CTGGAG 1 cut(s) 71
HaeIII GGCC 1 cut(s) 503
HgaI GACGC 1 cut(s) 94
HhaI GCGC 2 cut(s) 110, 401
Hin6I GCGC 2 cut(s) 108, 399
HinP1I GCGC 2 cut(s) 108, 399
HinfI GANTC 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 462
Hpy188I TCNGA 3 cut(s) 22, 39, 376
Hpy188III TCNNGA 4 cut(s) 98, 191, 215, 479
Hpy8I GTNNAC 1 cut(s) 462
Hpy99I CGWCG 2 cut(s) 88, 197
HpyAV CCTTC 1 cut(s) 448
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 2 cut(s) 164, 286
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 283
HpyF3I CTNAG 3 cut(s) 36, 111, 216
HpySE526I ACGT 1 cut(s) 226
HspAI GCGC 2 cut(s) 108, 399
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 7 cut(s) 35, 62, 220, 228, 264, 450, 518
LweI GCATC 4 cut(s) 18, 151, 187, 295
MaeI CTAG 3 cut(s) 98, 365, 498
MaeII ACGT 1 cut(s) 226
MbiI CCGCTC 1 cut(s) 476
MboII GAAGA 1 cut(s) 284
MfeI CAATTG 2 cut(s) 147, 394
MhlI GDGCHC 2 cut(s) 279, 505
MluCI AATT 5 cut(s) 14, 147, 307, 394, 430
MnlI CCTC 3 cut(s) 106, 300, 326
MseI TTAA 2 cut(s) 138, 300
MspR9I CCNGG 1 cut(s) 50
MunI CAATTG 2 cut(s) 147, 394
Mva1269I GAATGC 1 cut(s) 88
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 85, 283
NlaIV GGNNCC 3 cut(s) 47, 239, 503
PctI GAATGC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 94
PflMI CCANNNNNTGG 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 3 cut(s) 47, 239, 503
PspOMI GGGCCC 1 cut(s) 501
PspPI GGNCC 2 cut(s) 501, 502
SaqAI TTAA 2 cut(s) 138, 300
Sau96I GGNCC 2 cut(s) 501, 502
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 2 cut(s) 279, 505
SetI ASST 6 cut(s) 117, 229, 239, 318, 442, 459
SfaNI GCATC 4 cut(s) 18, 151, 187, 295
Sse9I AATT 5 cut(s) 14, 147, 307, 394, 430
SsiI CCGC 2 cut(s) 156, 474
SspI AATATT 1 cut(s) 187
SspMI CTAG 3 cut(s) 98, 365, 498
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 2 cut(s) 74, 364
TaaI ACNGT 1 cut(s) 210
TaiI ACGT 1 cut(s) 229
TaqI TCGA 1 cut(s) 92
TaqII GACCGA 1 cut(s) 269
TasI AATT 5 cut(s) 14, 147, 307, 394, 430
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 2 cut(s) 138, 300
Tru9I TTAA 2 cut(s) 138, 300
TspDTI ATGAA 2 cut(s) 422, 467
Van91I CCANNNNNTGG 1 cut(s) 75
XapI RAATTY 2 cut(s) 14, 307
XbaI TCTAGA 1 cut(s) 97
XmaJI CCTAGG 1 cut(s) 364
XspI CTAG 3 cut(s) 98, 365, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.