Rh7DG180100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000480
Physical Location & Seq
Forward (+)
16571723 .. 16572019
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG180100.1

Sequence Viewer

Length: 297 bp
ATGTTATCGTCATCAAATTCCTATAAATGGAGCCTCAAATTTGGCTTTGAACCAAAACAATTGGGTTCGTTCTGCCATCGGTGCTGTCTCACCCTTCGGCTCGCCTGCACTCGGATCGATTCCAGACGCGCGCCCCCTCGCCTCGCTGCCGCGCCGCCGCCCCAGCCCCAGCGCTACGCCGCTTGGATCCGGCTCCTTGTTGCCCGACCTCCAGCGCAACCCGGCCATGGCCCCAGCTCCGTTCGACCCATCCTTGGTGTGCAGCAATCCCTCGTCGCCCCAGGCCCTCGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.83

Weight (kDa)

11.55

Isoelectric Point (pI)

86.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 129, 131, 152
AciI CCGC 4 cut(s) 150, 155, 158, 180
AclWI GGATC 3 cut(s) 122, 181, 194
AcoI YGGCCR 1 cut(s) 223
AcsI RAATTY 2 cut(s) 16, 38
AfeI AGCGCT 1 cut(s) 173
AfiI CCNNNNNNNGG 4 cut(s) 27, 111, 227, 254
AgsI TTSAA 1 cut(s) 50
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 1 cut(s) 237
AluI AGCT 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 3 cut(s) 122, 181, 194
Aor51HI AGCGCT 1 cut(s) 173
AoxI GGCC 3 cut(s) 223, 229, 283
ApeKI GCWGC 2 cut(s) 146, 262
ApoI RAATTY 2 cut(s) 16, 38
AspLEI GCGC 5 cut(s) 131, 133, 154, 174, 217
AspS9I GGNCC 2 cut(s) 230, 284
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 82
BamHI GGATCC 1 cut(s) 186
BbvI GCAGC 2 cut(s) 133, 274
BccI CCATC 2 cut(s) 84, 257
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BciT130I CCWGG 1 cut(s) 282
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 92
BfoI RGCGCY 1 cut(s) 175
BisI GCNGC 6 cut(s) 147, 150, 155, 158, 180, 263
BlsI GCNGC 6 cut(s) 148, 151, 156, 159, 181, 264
Bme1390I CCNGG 2 cut(s) 222, 282
BmgT120I GGNCC 2 cut(s) 230, 284
BmiI GGNNCC 4 cut(s) 32, 188, 194, 232
BmrFI CCNGG 2 cut(s) 222, 282
BpmI CTGGAG 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 222
Bsa29I ATCGAT 1 cut(s) 117
BsaJI CCNNGG 3 cut(s) 226, 253, 280
Bsc4I CCNNNNNNNGG 4 cut(s) 27, 111, 227, 254
Bse118I RCCGGY 1 cut(s) 291
BseBI CCWGG 1 cut(s) 282
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 3 cut(s) 226, 253, 280
BseGI GGATG 1 cut(s) 249
BseLI CCNNNNNNNGG 4 cut(s) 27, 111, 227, 254
BsePI GCGCGC 1 cut(s) 129
BseXI GCAGC 2 cut(s) 133, 274
BseYI CCCAGC 3 cut(s) 162, 168, 233
BsgI GTGCAG 2 cut(s) 91, 281
Bsh1236I CGCG 3 cut(s) 129, 131, 152
BshFI GGCC 3 cut(s) 225, 231, 285
BshVI ATCGAT 1 cut(s) 117
BsiSI CCGG 3 cut(s) 190, 222, 292
BslI CCNNNNNNNGG 4 cut(s) 27, 111, 227, 254
BsmAI GTCTC 1 cut(s) 92
BsnI GGCC 3 cut(s) 225, 231, 285
Bsp143I GATC 2 cut(s) 114, 186
Bsp19I CCATGG 1 cut(s) 226
BspACI CCGC 4 cut(s) 150, 155, 158, 180
BspANI GGCC 3 cut(s) 225, 231, 285
BspDI ATCGAT 1 cut(s) 117
BspFNI CGCG 3 cut(s) 129, 131, 152
BspLI GGNNCC 4 cut(s) 32, 188, 194, 232
BspPI GGATC 3 cut(s) 122, 181, 194
BsrFI RCCGGY 1 cut(s) 291
BssAI RCCGGY 1 cut(s) 291
BssECI CCNNGG 3 cut(s) 226, 253, 280
BssHII GCGCGC 1 cut(s) 129
BssMI GATC 2 cut(s) 114, 186
BssT1I CCWWGG 2 cut(s) 226, 253
Bst2UI CCWGG 1 cut(s) 282
BstC8I GCNNGC 3 cut(s) 102, 106, 131
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 249
BstFNI CGCG 3 cut(s) 129, 131, 152
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 5 cut(s) 131, 133, 154, 174, 217
BstKTI GATC 2 cut(s) 117, 189
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 2 cut(s) 114, 186
BstMWI GCNNNNNNNGC 2 cut(s) 81, 163
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 2 cut(s) 220, 280
BstUI CGCG 3 cut(s) 129, 131, 152
BstV1I GCAGC 2 cut(s) 133, 274
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
Bsu15I ATCGAT 1 cut(s) 117
BsuRI GGCC 3 cut(s) 225, 231, 285
BsuTUI ATCGAT 1 cut(s) 117
BtgI CCRYGG 1 cut(s) 226
BtsCI GGATG 1 cut(s) 249
Cac8I GCNNGC 3 cut(s) 102, 106, 131
CfoI GCGC 5 cut(s) 131, 133, 154, 174, 217
Cfr10I RCCGGY 1 cut(s) 291
Cfr13I GGNCC 2 cut(s) 230, 284
ClaI ATCGAT 1 cut(s) 117
CseI GACGC 1 cut(s) 135
CviAII CATG 1 cut(s) 227
CviJI RGCY 9 cut(s) 33, 45, 100, 166, 193, 225, 231, 237, 285
CviKI_1 RGCY 9 cut(s) 33, 45, 100, 166, 193, 225, 231, 237, 285
DpnI GATC 2 cut(s) 116, 188
DpnII GATC 2 cut(s) 114, 186
EaeI YGGCCR 1 cut(s) 223
Eco130I CCWWGG 2 cut(s) 226, 253
Eco47III AGCGCT 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 2 cut(s) 226, 253
ErhI CCWWGG 2 cut(s) 226, 253
FaeI CATG 1 cut(s) 230
FaiI YATR 2 cut(s) 24, 228
FatI CATG 1 cut(s) 226
Fnu4HI GCNGC 6 cut(s) 147, 150, 155, 158, 180, 263
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 6 cut(s) 147, 150, 155, 158, 180, 263
GlaI GCGC 5 cut(s) 130, 132, 153, 173, 216
GluI GCNGC 6 cut(s) 147, 150, 155, 158, 180, 263
GsaI CCCAGC 3 cut(s) 166, 172, 237
GsuI CTGGAG 1 cut(s) 195
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 3 cut(s) 225, 231, 285
HapII CCGG 3 cut(s) 190, 222, 292
HgaI GACGC 1 cut(s) 135
HhaI GCGC 5 cut(s) 131, 133, 154, 174, 217
Hin1II CATG 1 cut(s) 230
Hin6I GCGC 5 cut(s) 129, 131, 152, 172, 215
HinP1I GCGC 5 cut(s) 129, 131, 152, 172, 215
HinfI GANTC 1 cut(s) 119
HpaII CCGG 3 cut(s) 190, 222, 292
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 1 cut(s) 123
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 104
HpyCH4V TGCA 2 cut(s) 108, 262
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 163
Hsp92II CATG 1 cut(s) 230
HspAI GCGC 5 cut(s) 129, 131, 152, 172, 215
Kzo9I GATC 2 cut(s) 114, 186
LmnI GCTCC 3 cut(s) 30, 198, 242
LpnPI CCDG 9 cut(s) 118, 136, 176, 182, 203, 225, 235, 247, 267
Lsp1109I GCAGC 2 cut(s) 133, 274
MalI GATC 2 cut(s) 116, 188
MboI GATC 2 cut(s) 114, 186
MfeI CAATTG 1 cut(s) 59
MflI RGATCY 1 cut(s) 186
MluCI AATT 3 cut(s) 16, 38, 59
MnlI CCTC 6 cut(s) 44, 147, 152, 219, 281, 297
MspI CCGG 3 cut(s) 190, 222, 292
MspR9I CCNGG 2 cut(s) 222, 282
MunI CAATTG 1 cut(s) 59
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 3 cut(s) 129, 131, 152
MwoI GCNNNNNNNGC 2 cut(s) 81, 163
NciI CCSGG 1 cut(s) 222
NcoI CCATGG 1 cut(s) 226
NdeII GATC 2 cut(s) 114, 186
NlaIII CATG 1 cut(s) 230
NlaIV GGNNCC 4 cut(s) 32, 188, 194, 232
PauI GCGCGC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 6 cut(s) 148, 151, 156, 159, 181, 264
Psp6I CCWGG 1 cut(s) 280
PspFI CCCAGC 3 cut(s) 162, 168, 233
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 4 cut(s) 32, 188, 194, 232
PspPI GGNCC 2 cut(s) 230, 284
PsuI RGATCY 1 cut(s) 186
PteI GCGCGC 1 cut(s) 129
SatI GCNGC 6 cut(s) 147, 150, 155, 158, 180, 263
Sau3AI GATC 2 cut(s) 114, 186
Sau96I GGNCC 2 cut(s) 230, 284
ScrFI CCNGG 2 cut(s) 222, 282
SetI ASST 2 cut(s) 211, 239
SgrAI CRCCGGYG 1 cut(s) 291
Sse9I AATT 3 cut(s) 16, 38, 59
SsiI CCGC 4 cut(s) 150, 155, 158, 180
StyD4I CCNGG 2 cut(s) 220, 280
StyI CCWWGG 2 cut(s) 226, 253
TaqI TCGA 2 cut(s) 117, 244
TasI AATT 3 cut(s) 16, 38, 59
TauI GCSGC 4 cut(s) 152, 157, 160, 182
TfiI GAWTC 1 cut(s) 119
TseI GCWGC 2 cut(s) 146, 262
TspGWI ACGGA 1 cut(s) 229
XapI RAATTY 2 cut(s) 16, 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.