Rmu_sc0007646.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007646.1
OG0000480
Physical Location & Seq
Reverse (-)
8267 .. 8727
461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007646.1_g000003.1.cds

Sequence Viewer

Length: 384 bp
atggtggcgtgccgctcaagtcactacggcttgctgtgcaagtttacttgcagcccacgccgaggtacacctataaataggctgcttgacgtcaaggattcgcttgagcatgccctgtcggaggcccgcaatctgaagactgaggtccataacctgtcgttggagcttcaacgctcgagggatcatgcagagtgtttgaaaatagaactccgcgaatgttatcgacgggaaaggtttctggacgaggtccgcgttcaaagtcgtgaagatggatatcgcgatgccgttatcgaataccgtcaacgcatgatactgaactttcccgggatagatgagtcccttttaccatactatgtgggctctgacggcacctcccgaaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.88

Weight (kDa)

7.67

Isoelectric Point (pI)

70.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 93
AccB1I GGYRCC 1 cut(s) 368
AccBSI CCGCTC 1 cut(s) 15
AccII CGCG 3 cut(s) 213, 252, 279
AciI CCGC 4 cut(s) 13, 127, 211, 250
AclWI GGATC 1 cut(s) 189
AcuI CTGAAG 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 1 cut(s) 67
AfiI CCNNNNNNNGG 3 cut(s) 62, 121, 160
AgsI TTSAA 3 cut(s) 170, 199, 257
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
AlwI GGATC 1 cut(s) 189
Ama87I CYCGRG 2 cut(s) 175, 323
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 2 cut(s) 51, 82
Asp700I GAANNNNTTC 1 cut(s) 234
AspS9I GGNCC 3 cut(s) 124, 145, 247
AsuC2I CCSGG 2 cut(s) 324, 325
AvaI CYCGRG 2 cut(s) 175, 323
AvaII GGWCC 2 cut(s) 145, 247
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 143
BbvI GCAGC 2 cut(s) 63, 69
BccI CCATC 1 cut(s) 263
BceAI ACGGC 3 cut(s) 43, 269, 382
BcnI CCSGG 2 cut(s) 324, 325
BisI GCNGC 3 cut(s) 13, 52, 83
BlsI GCNGC 3 cut(s) 14, 53, 84
Bme1390I CCNGG 2 cut(s) 324, 325
Bme18I GGWCC 2 cut(s) 145, 247
BmeT110I CYCGRG 2 cut(s) 175, 323
BmgT120I GGNCC 3 cut(s) 124, 145, 247
BmiI GGNNCC 1 cut(s) 370
BmrFI CCNGG 2 cut(s) 324, 325
BmsI GCATC 1 cut(s) 271
BoxI GACNNNNGTC 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 125
BpuMI CCSGG 2 cut(s) 324, 325
BsaBI GATNNNNATC 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 61, 323
BsaXI ACNNNNNCTCC 1 cut(s) 356
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 121, 160
Bse8I GATNNNNATC 1 cut(s) 273
BseDI CCNNGG 2 cut(s) 61, 323
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 3 cut(s) 62, 121, 160
BseMII CTCAG 1 cut(s) 132
BseXI GCAGC 2 cut(s) 63, 69
Bsh1236I CGCG 3 cut(s) 213, 252, 279
BshFI GGCC 1 cut(s) 125
BshNI GGYRCC 1 cut(s) 368
BsiHKCI CYCGRG 2 cut(s) 175, 323
BsiSI CCGG 1 cut(s) 324
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 3 cut(s) 62, 121, 160
BsmFI GGGAC 1 cut(s) 322
BsnI GGCC 1 cut(s) 125
BsoBI CYCGRG 2 cut(s) 175, 323
Bsp1286I GDGCHC 1 cut(s) 362
Bsp143I GATC 1 cut(s) 181
Bsp68I TCGCGA 1 cut(s) 279
BspACI CCGC 4 cut(s) 13, 127, 211, 250
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 133
BspFNI CGCG 3 cut(s) 213, 252, 279
BspLI GGNNCC 1 cut(s) 370
BspPI GGATC 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 368
BsrBI CCGCTC 1 cut(s) 15
BssECI CCNNGG 2 cut(s) 61, 323
BssMI GATC 1 cut(s) 181
BssNI GRCGYC 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 299
BstACI GRCGYC 1 cut(s) 90
BstC8I GCNNGC 4 cut(s) 10, 32, 111, 127
BstDEI CTNAG 1 cut(s) 141
BstENI CCTNNNNNAGG 1 cut(s) 119
BstFNI CGCG 3 cut(s) 213, 252, 279
BstKTI GATC 1 cut(s) 184
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 3 cut(s) 36, 57, 366
BstNSI RCATGY 1 cut(s) 113
BstPAI GACNNNNGTC 1 cut(s) 143
BstSCI CCNGG 2 cut(s) 322, 323
BstUI CGCG 3 cut(s) 213, 252, 279
BstV1I GCAGC 2 cut(s) 63, 69
BstV2I GAAGAC 1 cut(s) 143
BsuRI GGCC 1 cut(s) 125
BtgZI GCGATG 1 cut(s) 294
BtuMI TCGCGA 1 cut(s) 279
Cac8I GCNNGC 4 cut(s) 10, 32, 111, 127
Cfr13I GGNCC 3 cut(s) 124, 145, 247
Cfr9I CCCGGG 1 cut(s) 323
Csp6I GTAC 1 cut(s) 66
CviAII CATG 3 cut(s) 110, 185, 307
CviJI RGCY 6 cut(s) 30, 54, 82, 125, 166, 360
CviKI_1 RGCY 6 cut(s) 30, 54, 82, 125, 166, 360
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 1 cut(s) 141
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 362
Eco32I GATATC 1 cut(s) 275
Eco47I GGWCC 2 cut(s) 145, 247
Eco57I CTGAAG 1 cut(s) 155
Eco88I CYCGRG 2 cut(s) 175, 323
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoRV GATATC 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 362
FaeI CATG 3 cut(s) 113, 188, 310
FaiI YATR 7 cut(s) 74, 111, 150, 186, 308, 349, 354
FaqI GGGAC 1 cut(s) 322
FatI CATG 3 cut(s) 109, 184, 306
FauI CCCGC 1 cut(s) 134
Fnu4HI GCNGC 3 cut(s) 13, 52, 83
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 3 cut(s) 13, 52, 83
GluI GCNGC 3 cut(s) 13, 52, 83
HaeIII GGCC 1 cut(s) 125
HapII CCGG 1 cut(s) 324
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 3 cut(s) 113, 188, 310
HincII GTYRAC 1 cut(s) 302
HindII GTYRAC 1 cut(s) 302
HinfI GANTC 2 cut(s) 98, 335
HpaII CCGG 1 cut(s) 324
Hpy166II GTNNAC 3 cut(s) 45, 68, 302
Hpy188I TCNGA 3 cut(s) 121, 135, 364
Hpy188III TCNNGA 4 cut(s) 239, 263, 278, 375
Hpy8I GTNNAC 3 cut(s) 45, 68, 302
Hpy99I CGWCG 1 cut(s) 228
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 3 cut(s) 39, 51, 188
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 57, 366
HpyF3I CTNAG 1 cut(s) 141
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 3 cut(s) 113, 188, 310
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 4 cut(s) 128, 167, 224, 337
Lsp1109I GCAGC 2 cut(s) 63, 69
LweI GCATC 1 cut(s) 271
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 20
MalI GATC 1 cut(s) 183
MbiI CCGCTC 1 cut(s) 15
MboI GATC 1 cut(s) 181
MboII GAAGA 2 cut(s) 148, 278
MhlI GDGCHC 1 cut(s) 362
MluCI AATT 1 cut(s) 379
MlyI GAGTC 1 cut(s) 344
MmeI TCCRAC 2 cut(s) 99, 141
MnlI CCTC 6 cut(s) 56, 115, 136, 171, 238, 382
MroXI GAANNNNTTC 1 cut(s) 234
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 2 cut(s) 324, 325
MvnI CGCG 3 cut(s) 213, 252, 279
MwoI GCNNNNNNNGC 3 cut(s) 36, 57, 366
NciI CCSGG 2 cut(s) 324, 325
NdeII GATC 1 cut(s) 181
NlaIII CATG 3 cut(s) 113, 188, 310
NlaIV GGNNCC 1 cut(s) 370
NmeAIII GCCGAG 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 20
NruI TCGCGA 1 cut(s) 279
NspI RCATGY 1 cut(s) 113
PaeI GCATGC 1 cut(s) 113
PaeR7I CTCGAG 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 98
PflFI GACNNNGTC 1 cut(s) 245
PkrI GCNGC 3 cut(s) 14, 53, 84
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PshAI GACNNNNGTC 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 370
PspPI GGNCC 3 cut(s) 124, 145, 247
PspXI VCTCGAGB 1 cut(s) 175
PsyI GACNNNGTC 1 cut(s) 245
RruI TCGCGA 1 cut(s) 279
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
SatI GCNGC 3 cut(s) 13, 52, 83
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 3 cut(s) 124, 145, 247
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 2 cut(s) 324, 325
SduI GDGCHC 1 cut(s) 362
SetI ASST 9 cut(s) 67, 73, 93, 147, 156, 168, 236, 249, 374
SfaNI GCATC 1 cut(s) 271
Sfr274I CTCGAG 1 cut(s) 175
SinI GGWCC 2 cut(s) 145, 247
SlaI CTCGAG 1 cut(s) 175
SmaI CCCGGG 1 cut(s) 325
SmlI CTYRAG 3 cut(s) 16, 104, 175
SmoI CTYRAG 3 cut(s) 16, 104, 175
SphI GCATGC 1 cut(s) 113
Sse9I AATT 1 cut(s) 379
SsiI CCGC 4 cut(s) 13, 127, 211, 250
StyD4I CCNGG 2 cut(s) 322, 323
TaaI ACNGT 1 cut(s) 299
TaiI ACGT 1 cut(s) 93
TaqI TCGA 3 cut(s) 176, 223, 291
TasI AATT 1 cut(s) 379
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 1 cut(s) 98
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 2 cut(s) 51, 82
Tsp45I GTSAC 1 cut(s) 20
TspMI CCCGGG 1 cut(s) 323
Tth111I GACNNNGTC 1 cut(s) 245
VpaK11BI GGWCC 2 cut(s) 145, 247
XagI CCTNNNNNAGG 1 cut(s) 119
XceI RCATGY 1 cut(s) 113
XhoI CTCGAG 1 cut(s) 175
XmaI CCCGGG 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 234
ZraI GACGTC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.