Rmu_sc0006318.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006318.1
OG0000480
Physical Location & Seq
Reverse (-)
26425 .. 27911
1487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006318.1_g000009.1.cds

Sequence Viewer

Length: 570 bp
atgtcatcgcattctccgctgcagagggttcatttcactcctccacccatgccaaatactaccgctcatccatcccctcgaatagcccatatgtcctcggcaacccgatcggtcatgatgcctcctcctccatccaaagttctagaattaagtttcaggaaacgtgacaactcccatgttctggtaggagaatccatgttcgccaatggtccggcagcgtcagcggtaattagtgcctttgcctcactgaggcccaattcagagctgtctcctaagagtcctacggaactgtacaatgacatgtgcgcttttcagctggatgccctcatggcgtcccaccacttcctacgtagcctcgtcgccttccaattgaagcaacaacaacagttggacgaagcgagtcgccaactcaaatctcaggaagaggagcttaacgaacagatgaaaacaatggcagacctaagtcacctcctcgaggacaaagatgaacgctcgggaggtgagatgactcagaagcaagggattggaccttggcttaccccgcctccggtactaagtgaggttttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.97

Weight (kDa)

6.23

Isoelectric Point (pI)

68.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 473
AccB7I CCANNNNNTGG 1 cut(s) 181
AccBSI CCGCTC 1 cut(s) 65
AciI CCGC 4 cut(s) 17, 63, 224, 542
AcyI GRCGYC 1 cut(s) 332
AfaI GTAC 2 cut(s) 293, 552
AfiI CCNNNNNNNGG 4 cut(s) 181, 249, 475, 547
AflIII ACRYGT 1 cut(s) 300
AgsI TTSAA 1 cut(s) 373
AluBI AGCT 3 cut(s) 265, 316, 430
AluI AGCT 3 cut(s) 265, 316, 430
Alw26I GTCTC 1 cut(s) 273
Ama87I CYCGRG 2 cut(s) 473, 493
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 19, 215
AspLEI GCGC 1 cut(s) 308
AspS9I GGNCC 3 cut(s) 209, 252, 527
AsuHPI GGTGA 2 cut(s) 458, 512
AvaI CYCGRG 2 cut(s) 473, 493
AvaII GGWCC 2 cut(s) 209, 527
BbvI GCAGC 2 cut(s) 6, 227
BccI CCATC 2 cut(s) 79, 139
BcgI CGANNNNNNTGC 2 cut(s) 90, 124
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 1 cut(s) 143
BfmI CTRYAG 1 cut(s) 20
BglI GCCNNNNNGGC 1 cut(s) 329
BisI GCNGC 2 cut(s) 20, 216
BlsI GCNGC 2 cut(s) 21, 217
Bme18I GGWCC 2 cut(s) 209, 527
BmeT110I CYCGRG 2 cut(s) 473, 493
BmgT120I GGNCC 3 cut(s) 209, 252, 527
BmsI GCATC 2 cut(s) 108, 310
BoxI GACNNNNGTC 1 cut(s) 462
BsaAI YACGTR 1 cut(s) 350
BsaHI GRCGYC 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 96, 530
BsaWI WCCGGW 1 cut(s) 547
BsaXI ACNNNNNCTCC 2 cut(s) 529, 559
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 249, 475, 547
BseDI CCNNGG 2 cut(s) 96, 530
BseGI GGATG 4 cut(s) 67, 71, 131, 325
BseLI CCNNNNNNNGG 4 cut(s) 181, 249, 475, 547
BseMII CTCAG 3 cut(s) 239, 431, 524
BseRI GAGGAG 5 cut(s) 30, 114, 117, 440, 461
BseXI GCAGC 2 cut(s) 6, 227
Bsh1285I CGRYCG 1 cut(s) 110
BshFI GGCC 1 cut(s) 253
BsiEI CGRYCG 1 cut(s) 110
BsiHKCI CYCGRG 2 cut(s) 473, 493
BsiSI CCGG 2 cut(s) 212, 548
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 4 cut(s) 181, 249, 475, 547
BsmAI GTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 319
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 253
BsoBI CYCGRG 2 cut(s) 473, 493
Bsp1407I TGTACA 1 cut(s) 291
Bsp143I GATC 1 cut(s) 107
BspACI CCGC 4 cut(s) 17, 63, 224, 542
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 3 cut(s) 240, 430, 523
BspHI TCATGA 1 cut(s) 114
BspMAI CTGCAG 1 cut(s) 24
BsrBI CCGCTC 1 cut(s) 65
BsrGI TGTACA 1 cut(s) 291
BssECI CCNNGG 2 cut(s) 96, 530
BssMI GATC 1 cut(s) 107
BssNI GRCGYC 1 cut(s) 332
BssT1I CCWWGG 1 cut(s) 530
Bst4CI ACNGT 2 cut(s) 291, 387
Bst6I CTCTTC 1 cut(s) 417
BstACI GRCGYC 1 cut(s) 332
BstAUI TGTACA 1 cut(s) 291
BstBAI YACGTR 1 cut(s) 350
BstDEI CTNAG 6 cut(s) 248, 273, 417, 461, 510, 554
BstENI CCTNNNNNAGG 2 cut(s) 247, 473
BstF5I GGATG 4 cut(s) 67, 71, 131, 325
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 1 cut(s) 110
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 1 cut(s) 107
BstMCI CGRYCG 1 cut(s) 110
BstMWI GCNNNNNNNGC 4 cut(s) 16, 221, 329, 541
BstNSI RCATGY 1 cut(s) 304
BstPAI GACNNNNGTC 1 cut(s) 462
BstSFI CTRYAG 1 cut(s) 20
BstSNI TACGTA 1 cut(s) 350
BstV1I GCAGC 2 cut(s) 6, 227
BsuRI GGCC 1 cut(s) 253
BtsCI GGATG 4 cut(s) 67, 71, 131, 325
BtsIMutI CAGTG 1 cut(s) 245
CciI TCATGA 1 cut(s) 114
CfoI GCGC 1 cut(s) 308
Cfr13I GGNCC 3 cut(s) 209, 252, 527
CseI GACGC 2 cut(s) 207, 321
Csp6I GTAC 2 cut(s) 292, 551
CviAII CATG 6 cut(s) 49, 115, 176, 196, 301, 328
CviJI RGCY 7 cut(s) 86, 253, 265, 316, 354, 430, 535
CviKI_1 RGCY 7 cut(s) 86, 253, 265, 316, 354, 430, 535
CviQI GTAC 2 cut(s) 292, 551
DdeI CTNAG 6 cut(s) 248, 273, 417, 461, 510, 554
DpnI GATC 1 cut(s) 109
DpnII GATC 1 cut(s) 107
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Eco105I TACGTA 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 530
Eco47I GGWCC 2 cut(s) 209, 527
Eco88I CYCGRG 2 cut(s) 473, 493
EcoNI CCTNNNNNAGG 2 cut(s) 247, 473
EcoT14I CCWWGG 1 cut(s) 530
ErhI CCWWGG 1 cut(s) 530
FaeI CATG 6 cut(s) 52, 118, 179, 199, 304, 331
FaiI YATR 8 cut(s) 50, 90, 92, 116, 177, 197, 302, 329
FalI AAGNNNNNCTT 2 cut(s) 414, 446
FaqI GGGAC 1 cut(s) 319
FatI CATG 6 cut(s) 48, 114, 175, 195, 300, 327
FauI CCCGC 1 cut(s) 549
FauNDI CATATG 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 20, 216
FokI GGATG 4 cut(s) 54, 58, 118, 332
Fsp4HI GCNGC 2 cut(s) 20, 216
FspBI CTAG 1 cut(s) 143
GlaI GCGC 1 cut(s) 307
GluI GCNGC 2 cut(s) 20, 216
HaeIII GGCC 1 cut(s) 253
HapII CCGG 2 cut(s) 212, 548
HgaI GACGC 2 cut(s) 207, 321
HhaI GCGC 1 cut(s) 308
Hin1I GRCGYC 1 cut(s) 332
Hin1II CATG 6 cut(s) 52, 118, 179, 199, 304, 331
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HinfI GANTC 4 cut(s) 191, 277, 400, 508
HpaII CCGG 2 cut(s) 212, 548
HphI GGTGA 2 cut(s) 458, 512
Hpy188I TCNGA 3 cut(s) 262, 513, 569
Hpy188III TCNNGA 5 cut(s) 115, 143, 157, 419, 495
Hpy99I CGWCG 1 cut(s) 362
HpyAV CCTTC 1 cut(s) 373
HpyCH4III ACNGT 2 cut(s) 291, 387
HpyCH4IV ACGT 2 cut(s) 163, 349
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 221, 329, 541
HpyF3I CTNAG 6 cut(s) 248, 273, 417, 461, 510, 554
HpySE526I ACGT 2 cut(s) 163, 349
Hsp92I GRCGYC 1 cut(s) 332
Hsp92II CATG 6 cut(s) 52, 118, 179, 199, 304, 331
HspAI GCGC 1 cut(s) 306
Kzo9I GATC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 427
LpnPI CCDG 6 cut(s) 142, 167, 225, 302, 404, 561
Lsp1109I GCAGC 2 cut(s) 6, 227
LweI GCATC 2 cut(s) 108, 310
MaeI CTAG 1 cut(s) 143
MaeII ACGT 2 cut(s) 163, 349
MaeIII GTNAC 2 cut(s) 164, 464
MalI GATC 1 cut(s) 109
MbiI CCGCTC 1 cut(s) 65
MboI GATC 1 cut(s) 107
MboII GAAGA 1 cut(s) 434
MfeI CAATTG 1 cut(s) 368
MluCI AATT 4 cut(s) 146, 228, 256, 368
MlyI GAGTC 3 cut(s) 286, 409, 502
MmeI TCCRAC 1 cut(s) 369
MseI TTAA 2 cut(s) 149, 432
MspA1I CMGCKG 3 cut(s) 19, 224, 316
MspI CCGG 2 cut(s) 212, 548
MunI CAATTG 1 cut(s) 368
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 4 cut(s) 16, 221, 329, 541
NdeI CATATG 1 cut(s) 90
NdeII GATC 1 cut(s) 107
NlaIII CATG 6 cut(s) 52, 118, 179, 199, 304, 331
NmeAIII GCCGAG 1 cut(s) 77
NmuCI GTSAC 2 cut(s) 164, 464
NspI RCATGY 1 cut(s) 304
PaeR7I CTCGAG 1 cut(s) 473
PagI TCATGA 1 cut(s) 114
PciI ACATGT 1 cut(s) 300
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 191
PflMI CCANNNNNTGG 1 cut(s) 181
PkrI GCNGC 2 cut(s) 21, 217
Ple19I CGATCG 1 cut(s) 110
PleI GAGTC 3 cut(s) 285, 408, 502
PpsI GAGTC 3 cut(s) 285, 408, 502
Ppu21I YACGTR 1 cut(s) 350
PscI ACATGT 1 cut(s) 300
PshAI GACNNNNGTC 1 cut(s) 462
PspPI GGNCC 3 cut(s) 209, 252, 527
PspXI VCTCGAGB 1 cut(s) 473
PstI CTGCAG 1 cut(s) 24
PvuI CGATCG 1 cut(s) 110
PvuII CAGCTG 1 cut(s) 316
RsaI GTAC 2 cut(s) 293, 552
RsaNI GTAC 2 cut(s) 292, 551
SaqAI TTAA 2 cut(s) 149, 432
SatI GCNGC 2 cut(s) 20, 216
Sau3AI GATC 1 cut(s) 107
Sau96I GGNCC 3 cut(s) 209, 252, 527
SchI GAGTC 3 cut(s) 286, 409, 502
SfaNI GCATC 2 cut(s) 108, 310
SfcI CTRYAG 1 cut(s) 20
Sfr274I CTCGAG 1 cut(s) 473
SinI GGWCC 2 cut(s) 209, 527
SlaI CTCGAG 1 cut(s) 473
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
SnaBI TACGTA 1 cut(s) 350
Sse9I AATT 4 cut(s) 146, 228, 256, 368
SsiI CCGC 4 cut(s) 17, 63, 224, 542
SspMI CTAG 1 cut(s) 143
StyI CCWWGG 1 cut(s) 530
TaaI ACNGT 2 cut(s) 291, 387
TaiI ACGT 2 cut(s) 166, 352
TaqI TCGA 2 cut(s) 79, 474
TaqII GACCGA 1 cut(s) 100
TasI AATT 4 cut(s) 146, 228, 256, 368
TatI WGTACW 1 cut(s) 291
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 2 cut(s) 149, 432
Tru9I TTAA 2 cut(s) 149, 432
TscAI CASTG 1 cut(s) 252
TseFI GTSAC 2 cut(s) 164, 464
TseI GCWGC 2 cut(s) 19, 215
Tsp45I GTSAC 2 cut(s) 164, 464
TspDTI ATGAA 3 cut(s) 20, 458, 501
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 1 cut(s) 252
Van91I CCANNNNNTGG 1 cut(s) 181
VpaK11BI GGWCC 2 cut(s) 209, 527
XagI CCTNNNNNAGG 2 cut(s) 247, 473
XbaI TCTAGA 1 cut(s) 142
XceI RCATGY 1 cut(s) 304
XhoI CTCGAG 1 cut(s) 473
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.