Rmu_sc0002341.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002341.1
OG0000480
Physical Location & Seq
Reverse (-)
2440 .. 3246
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002341.1_g000002.1.cds

Sequence Viewer

Length: 807 bp
atggctcgcattaagtacacggacttggcgaaatcccaaaagaaaagtccggagccaatcgatgaacctacaccttggaaaccaaccgctcaagaaatagagaaatatgctacaacgtacgcggtctcaaagtccgtcaaactttcctcgattcctgacgatgccgatatctacactggcgagaatgtgcctggtgacaccttgatattgtctctttctcatctgaggtttatcagatttccaattcatcctgttttccaattagtagtgtggagggtccttggcttgcacccaatgcaacttcacccgaatgcttatcttttcttgtcttctttcttgatcatgggttggaaatggggtgtttccctgggtttatcagattttcttcatcttttcaactgtgtcagaacaggcaagcttcgatatttcaacttttctccatatccgaagatgaagatattcgcaggcgtgacgattagtcatccgggatggaggtctaaagccttgatgatctctggcaaatggcagtctccagaattagaccttttgcctccagctgctttcgctgacgaccttggtacgtccctcgatcataaccttgttatatttgatttctttccttggcattctcttttactcacccatatctggtttgacgtcgcgcagcttacaaacgaccccccacaatttgctcagtttcggtcgtttccaagaaatggagtgcaactctgtctgcaattggagctcaaacacttggcttttgacatggatgacatcttggtcaccttttcacacagctcttggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

268

Amino Acids

30.7

Weight (kDa)

7.19

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 779
AatII GACGTC 1 cut(s) 660
AccB7I CCANNNNNTGG 1 cut(s) 716
AccBSI CCGCTC 1 cut(s) 89
AccII CGCG 2 cut(s) 122, 662
AccIII TCCGGA 1 cut(s) 49
AciI CCGC 2 cut(s) 87, 122
AcyI GRCGYC 1 cut(s) 657
AfaI GTAC 3 cut(s) 17, 119, 580
AfiI CCNNNNNNNGG 2 cut(s) 648, 716
AgsI TTSAA 2 cut(s) 397, 430
AhdI GACNNNNNGTC 1 cut(s) 477
AjnI CCWGG 2 cut(s) 190, 366
AluBI AGCT 5 cut(s) 418, 557, 667, 745, 798
AluI AGCT 5 cut(s) 418, 557, 667, 745, 798
Alw21I GWGCWC 1 cut(s) 747
Alw26I GTCTC 3 cut(s) 130, 216, 534
Aor13HI TCCGGA 1 cut(s) 49
ApeKI GCWGC 2 cut(s) 557, 664
ArsI GACNNNNNNTTYG 2 cut(s) 31, 63
Asp700I GAANNNNTTC 1 cut(s) 458
AspLEI GCGC 1 cut(s) 664
AspS9I GGNCC 1 cut(s) 277
AsuC2I CCSGG 1 cut(s) 486
AsuHPI GGTGA 4 cut(s) 206, 296, 631, 775
AvaII GGWCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 747
BbsI GAAGAC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 747
BbvI GCAGC 2 cut(s) 544, 676
BccI CCATC 1 cut(s) 483
BciT130I CCWGG 2 cut(s) 192, 368
BclI TGATCA 1 cut(s) 339
BcnI CCSGG 1 cut(s) 486
BcoDI GTCTC 3 cut(s) 130, 216, 534
BisI GCNGC 2 cut(s) 558, 665
BlsI GCNGC 2 cut(s) 559, 666
Bme1390I CCNGG 3 cut(s) 192, 368, 486
Bme18I GGWCC 1 cut(s) 277
BmeRI GACNNNNNGTC 1 cut(s) 477
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 2 cut(s) 54, 278
BmrFI CCNGG 3 cut(s) 192, 368, 486
BmsI GCATC 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 321
BplI GAGNNNNNCTC 2 cut(s) 711, 743
BpmI CTGGAG 2 cut(s) 516, 537
BpuEI CTTGAG 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 486
Bsa29I ATCGAT 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 657
BsaI GGTCTC 1 cut(s) 130
BsaJI CCNNGG 6 cut(s) 74, 280, 366, 367, 574, 620
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 2 cut(s) 648, 716
Bse1I ACTGG 1 cut(s) 181
BseAI TCCGGA 1 cut(s) 49
BseBI CCWGG 2 cut(s) 192, 368
BseCI ATCGAT 1 cut(s) 60
BseDI CCNNGG 6 cut(s) 74, 280, 366, 367, 574, 620
BseGI GGATG 4 cut(s) 247, 481, 494, 775
BseLI CCNNNNNNNGG 2 cut(s) 648, 716
BseMII CTCAG 2 cut(s) 215, 707
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 2 cut(s) 544, 676
Bsh1236I CGCG 2 cut(s) 122, 662
Bsh1285I CGRYCG 1 cut(s) 704
BshVI ATCGAT 1 cut(s) 60
BsiEI CGRYCG 1 cut(s) 704
BsiHKAI GWGCWC 1 cut(s) 747
BsiSI CCGG 2 cut(s) 50, 485
BsiWI CGTACG 1 cut(s) 117
BslFI GGGAC 1 cut(s) 568
BslI CCNNNNNNNGG 2 cut(s) 648, 716
BsmAI GTCTC 3 cut(s) 130, 216, 534
BsmFI GGGAC 1 cut(s) 568
BsmI GAATGC 2 cut(s) 316, 625
Bso31I GGTCTC 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 747
Bsp13I TCCGGA 1 cut(s) 49
Bsp143I GATC 3 cut(s) 339, 510, 589
BspACI CCGC 2 cut(s) 87, 122
BspCNI CTCAG 2 cut(s) 216, 706
BspDI ATCGAT 1 cut(s) 60
BspEI TCCGGA 1 cut(s) 49
BspFNI CGCG 2 cut(s) 122, 662
BspLI GGNNCC 2 cut(s) 54, 278
BspTNI GGTCTC 1 cut(s) 130
BsrBI CCGCTC 1 cut(s) 89
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 6 cut(s) 74, 280, 366, 367, 574, 620
BssMI GATC 3 cut(s) 339, 510, 589
BssNI GRCGYC 1 cut(s) 657
BssT1I CCWWGG 4 cut(s) 74, 280, 574, 620
Bst2UI CCWGG 2 cut(s) 192, 368
Bst4CI ACNGT 1 cut(s) 401
BstACI GRCGYC 1 cut(s) 657
BstAPI GCANNNNNTGC 1 cut(s) 295
BstC8I GCNNGC 4 cut(s) 7, 287, 416, 466
BstDEI CTNAG 2 cut(s) 224, 693
BstEII GGTNACC 1 cut(s) 781
BstF5I GGATG 4 cut(s) 247, 481, 494, 775
BstFNI CGCG 2 cut(s) 122, 662
BstHHI GCGC 1 cut(s) 664
BstKTI GATC 3 cut(s) 342, 513, 592
BstMAI GTCTC 3 cut(s) 130, 216, 534
BstMBI GATC 3 cut(s) 339, 510, 589
BstMCI CGRYCG 1 cut(s) 704
BstMWI GCNNNNNNNGC 3 cut(s) 295, 563, 742
BstNI CCWGG 2 cut(s) 192, 368
BstPI GGTNACC 1 cut(s) 781
BstSCI CCNGG 3 cut(s) 190, 366, 484
BstUI CGCG 2 cut(s) 122, 662
BstV1I GCAGC 2 cut(s) 544, 676
BstV2I GAAGAC 1 cut(s) 321
Bsu15I ATCGAT 1 cut(s) 60
BsuTUI ATCGAT 1 cut(s) 60
BtsCI GGATG 4 cut(s) 247, 481, 494, 775
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 4 cut(s) 7, 287, 416, 466
CfoI GCGC 1 cut(s) 664
Cfr13I GGNCC 1 cut(s) 277
ClaI ATCGAT 1 cut(s) 60
Csp6I GTAC 3 cut(s) 16, 118, 579
CviAII CATG 2 cut(s) 343, 766
CviQI GTAC 3 cut(s) 16, 118, 579
DdeI CTNAG 2 cut(s) 224, 693
DpnI GATC 3 cut(s) 341, 512, 591
DpnII GATC 3 cut(s) 339, 510, 589
DrdI GACNNNNNNGTC 1 cut(s) 779
DriI GACNNNNNGTC 1 cut(s) 477
DseDI GACNNNNNNGTC 1 cut(s) 779
Eam1105I GACNNNNNGTC 1 cut(s) 477
Ecl136II GAGCTC 1 cut(s) 745
Eco130I CCWWGG 4 cut(s) 74, 280, 574, 620
Eco24I GRGCYC 1 cut(s) 747
Eco31I GGTCTC 1 cut(s) 130
Eco32I GATATC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 745
Eco91I GGTNACC 1 cut(s) 781
EcoICRI GAGCTC 1 cut(s) 745
EcoO109I RGGNCCY 1 cut(s) 277
EcoO65I GGTNACC 1 cut(s) 781
EcoRII CCWGG 2 cut(s) 190, 366
EcoRV GATATC 1 cut(s) 169
EcoT14I CCWWGG 4 cut(s) 74, 280, 574, 620
EcoT38I GRGCYC 1 cut(s) 747
ErhI CCWWGG 4 cut(s) 74, 280, 574, 620
FaeI CATG 2 cut(s) 346, 769
FaiI YATR 7 cut(s) 108, 344, 442, 594, 605, 645, 767
FaqI GGGAC 1 cut(s) 568
FatI CATG 2 cut(s) 342, 765
FbaI TGATCA 1 cut(s) 339
Fnu4HI GCNGC 2 cut(s) 558, 665
FokI GGATG 4 cut(s) 234, 468, 501, 782
FriOI GRGCYC 1 cut(s) 747
Fsp4HI GCNGC 2 cut(s) 558, 665
GlaI GCGC 1 cut(s) 663
GluI GCNGC 2 cut(s) 558, 665
GsuI CTGGAG 2 cut(s) 516, 537
HapII CCGG 2 cut(s) 50, 485
HhaI GCGC 1 cut(s) 664
Hin1I GRCGYC 1 cut(s) 657
Hin1II CATG 2 cut(s) 346, 769
Hin6I GCGC 1 cut(s) 662
HinP1I GCGC 1 cut(s) 662
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 1 cut(s) 151
HpaII CCGG 2 cut(s) 50, 485
HphI GGTGA 4 cut(s) 206, 296, 631, 775
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 5 cut(s) 225, 236, 379, 407, 447
Hpy188III TCNNGA 5 cut(s) 50, 92, 155, 337, 533
Hpy8I GTNNAC 1 cut(s) 18
Hpy99I CGWCG 1 cut(s) 662
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4IV ACGT 3 cut(s) 116, 581, 657
HpyCH4V TGCA 4 cut(s) 289, 298, 724, 736
HpyF10VI GCNNNNNNNGC 3 cut(s) 295, 563, 742
HpyF3I CTNAG 2 cut(s) 224, 693
HpySE526I ACGT 3 cut(s) 116, 581, 657
Hsp92I GRCGYC 1 cut(s) 657
Hsp92II CATG 2 cut(s) 346, 769
HspAI GCGC 1 cut(s) 662
Kpn2I TCCGGA 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 339
Kzo9I GATC 3 cut(s) 339, 510, 589
LmnI GCTCC 2 cut(s) 52, 742
Lsp1109I GCAGC 2 cut(s) 544, 676
LweI GCATC 1 cut(s) 151
MaeII ACGT 3 cut(s) 116, 581, 657
MaeIII GTNAC 3 cut(s) 194, 469, 781
MalI GATC 3 cut(s) 341, 512, 591
MbiI CCGCTC 1 cut(s) 89
MboI GATC 3 cut(s) 339, 510, 589
MboII GAAGA 4 cut(s) 321, 377, 460, 466
MfeI CAATTG 1 cut(s) 737
MhlI GDGCHC 1 cut(s) 747
MluCI AATT 5 cut(s) 243, 260, 536, 686, 737
MmeI TCCRAC 1 cut(s) 329
MnlI CCTC 6 cut(s) 157, 219, 267, 486, 561, 596
MroI TCCGGA 1 cut(s) 49
MroXI GAANNNNTTC 1 cut(s) 458
MseI TTAA 1 cut(s) 12
MslI CAYNNNNRTG 1 cut(s) 309
MspA1I CMGCKG 1 cut(s) 557
MspI CCGG 2 cut(s) 50, 485
MspR9I CCNGG 3 cut(s) 192, 368, 486
MunI CAATTG 1 cut(s) 737
Mva1269I GAATGC 2 cut(s) 316, 625
MvaI CCWGG 2 cut(s) 192, 368
MvnI CGCG 2 cut(s) 122, 662
MwoI GCNNNNNNNGC 3 cut(s) 295, 563, 742
NciI CCSGG 1 cut(s) 486
NdeII GATC 3 cut(s) 339, 510, 589
NlaIII CATG 2 cut(s) 346, 769
NlaIV GGNNCC 2 cut(s) 54, 278
NmuCI GTSAC 3 cut(s) 194, 469, 781
PasI CCCWGGG 1 cut(s) 367
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PctI GAATGC 2 cut(s) 316, 625
PdmI GAANNNNTTC 1 cut(s) 458
PfeI GAWTC 1 cut(s) 151
Pfl23II CGTACG 1 cut(s) 117
PflMI CCANNNNNTGG 1 cut(s) 716
PfoI TCCNGGA 1 cut(s) 484
PkrI GCNGC 2 cut(s) 559, 666
PpuMI RGGWCCY 1 cut(s) 277
Psp124BI GAGCTC 1 cut(s) 747
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 2 cut(s) 190, 366
PspEI GGTNACC 1 cut(s) 781
PspGI CCWGG 2 cut(s) 190, 366
PspLI CGTACG 1 cut(s) 117
PspN4I GGNNCC 2 cut(s) 54, 278
PspPI GGNCC 1 cut(s) 277
PspPPI RGGWCCY 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 3 cut(s) 17, 119, 580
RsaNI GTAC 3 cut(s) 16, 118, 579
RseI CAYNNNNRTG 1 cut(s) 309
SacI GAGCTC 1 cut(s) 747
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 2 cut(s) 558, 665
Sau3AI GATC 3 cut(s) 339, 510, 589
Sau96I GGNCC 1 cut(s) 277
ScrFI CCNGG 3 cut(s) 192, 368, 486
SduI GDGCHC 1 cut(s) 747
SfaNI GCATC 1 cut(s) 151
SinI GGWCC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 90
SmoI CTYRAG 1 cut(s) 90
Sse9I AATT 5 cut(s) 243, 260, 536, 686, 737
SsiI CCGC 2 cut(s) 87, 122
SstI GAGCTC 1 cut(s) 747
StyD4I CCNGG 3 cut(s) 190, 366, 484
StyI CCWWGG 4 cut(s) 74, 280, 574, 620
TaaI ACNGT 1 cut(s) 401
TaiI ACGT 3 cut(s) 119, 584, 660
TaqI TCGA 4 cut(s) 60, 149, 421, 588
TaqII GACCGA 1 cut(s) 690
TasI AATT 5 cut(s) 243, 260, 536, 686, 737
TatI WGTACW 1 cut(s) 15
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 3 cut(s) 194, 469, 781
TseI GCWGC 2 cut(s) 557, 664
Tsp45I GTSAC 3 cut(s) 194, 469, 781
TspDTI ATGAA 4 cut(s) 78, 236, 377, 467
TspGWI ACGGA 2 cut(s) 35, 124
TspRI CASTG 1 cut(s) 181
Van91I CCANNNNNTGG 1 cut(s) 716
VpaK11BI GGWCC 1 cut(s) 277
XmnI GAANNNNTTC 1 cut(s) 458
ZraI GACGTC 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.