Rmu_co8433837.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8433837.1
OG0000480
Physical Location & Seq
Forward (+)
1 .. 890
890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8433837.1_g000001.1.cds

Sequence Viewer

Length: 666 bp
gtccctaatctgtcctctcgaagggcccctacgtcctcagctagcccatccgccgtgatgcctcctcccagagttctggaattaagtttcaggaagcgtgacaactcctatgttttggcaggagaatccatgctcgccaatggtccaaccgcatcagcgatggctaatgccttcgcatcattgaagcccaattcagagctaccttccaagagtcccatggagctttacaatgacatttgcgcttctcagctggatgccctcatggtgtcccaccatttcctgcgcagcctcgtcgtccttcaatcacagcaacaacaacggttggacgaggcgagtcgccaactcaaatcccaggaagaggagcttaacaaacatatcaaaacaatggtggacttaagtctcctccttgaagacaaagagaggaggacaggtgctacgttggccccgacgagttcgatcgttactacggatttgcccccatgtgctactctcctattcgaggcatgcttccgggagatgttccctcgccggcatccagcgcttcggaaggtcatggccatgaggatgaggaagtgtcctctacccctcattccaaataaatgtcaggaggaaaagtgtcgctttcatttattccttggttctgagggttcatttcatagtgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

24.69

Weight (kDa)

8.97

Isoelectric Point (pI)

64.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 284
AciI CCGC 2 cut(s) 51, 150
AcoI YGGCCR 1 cut(s) 555
AfeI AGCGCT 1 cut(s) 540
AfiI CCNNNNNNNGG 3 cut(s) 21, 358, 499
AflII CTTAAG 1 cut(s) 394
AgsI TTSAA 3 cut(s) 184, 302, 410
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 5 cut(s) 41, 199, 223, 250, 364
AluI AGCT 5 cut(s) 41, 199, 223, 250, 364
Alw26I GTCTC 1 cut(s) 404
Aor51HI AGCGCT 1 cut(s) 540
AoxI GGCC 3 cut(s) 24, 441, 555
ApaI GGGCCC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 285
AspLEI GCGC 3 cut(s) 242, 285, 541
AspS9I GGNCC 4 cut(s) 24, 25, 143, 442
AsuC2I CCSGG 1 cut(s) 512
AsuNHI GCTAGC 1 cut(s) 41
AvaII GGWCC 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 28
BalI TGGCCA 1 cut(s) 557
BanII GRGCYC 1 cut(s) 28
BarI GAAGNNNNNNTAC 2 cut(s) 13, 45
BbsI GAAGAC 1 cut(s) 417
BbvCI CCTCAGC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 297
BccI CCATC 2 cut(s) 55, 154
BceAI ACGGC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BciT130I CCWGG 1 cut(s) 353
BcnI CCSGG 1 cut(s) 512
BcoDI GTCTC 1 cut(s) 404
BfaI CTAG 1 cut(s) 42
BfoI RGCGCY 1 cut(s) 542
BfrI CTTAAG 1 cut(s) 394
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
Bme1390I CCNGG 2 cut(s) 353, 512
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 4 cut(s) 24, 25, 143, 442
BmiI GGNNCC 3 cut(s) 26, 27, 444
BmrFI CCNGG 2 cut(s) 353, 512
BmsI GCATC 5 cut(s) 48, 161, 185, 244, 541
BmtI GCTAGC 1 cut(s) 45
BoxI GACNNNNGTC 1 cut(s) 396
BpiI GAAGAC 1 cut(s) 417
Bpu10I CCTNAGC 1 cut(s) 37
BpuMI CCSGG 1 cut(s) 512
BsaJI CCNNGG 3 cut(s) 216, 351, 634
BsaXI ACNNNNNCTCC 4 cut(s) 415, 445, 599, 629
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 358, 499
Bse118I RCCGGY 1 cut(s) 528
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 3 cut(s) 216, 351, 634
BseGI GGATG 4 cut(s) 47, 259, 532, 570
BseLI CCNNNNNNNGG 3 cut(s) 21, 358, 499
BseMII CTCAG 3 cut(s) 51, 260, 633
BseRI GAGGAG 4 cut(s) 54, 374, 392, 436
BseSI GKGCMC 1 cut(s) 28
BseXI GCAGC 1 cut(s) 297
Bsh1285I CGRYCG 1 cut(s) 459
BshFI GGCC 3 cut(s) 26, 443, 557
BsiEI CGRYCG 1 cut(s) 459
BsiSI CCGG 2 cut(s) 511, 529
BslFI GGGAC 2 cut(s) 198, 253
BslI CCNNNNNNNGG 3 cut(s) 21, 358, 499
BsmAI GTCTC 1 cut(s) 404
BsmFI GGGAC 2 cut(s) 198, 253
BsnI GGCC 3 cut(s) 26, 443, 557
Bsp120I GGGCCC 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 1 cut(s) 456
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 2 cut(s) 51, 150
BspANI GGCC 3 cut(s) 26, 443, 557
BspCNI CTCAG 3 cut(s) 50, 259, 634
BspLI GGNNCC 3 cut(s) 26, 27, 444
BspOI GCTAGC 1 cut(s) 45
BspTI CTTAAG 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 528
BssAI RCCGGY 1 cut(s) 528
BssECI CCNNGG 3 cut(s) 216, 351, 634
BssMI GATC 1 cut(s) 456
BssT1I CCWWGG 2 cut(s) 216, 634
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 1 cut(s) 321
Bst6I CTCTTC 1 cut(s) 351
BstAFI CTTAAG 1 cut(s) 394
BstC8I GCNNGC 4 cut(s) 43, 135, 505, 530
BstDEI CTNAG 3 cut(s) 37, 246, 642
BstDSI CCRYGG 1 cut(s) 216
BstENI CCTNNNNNAGG 2 cut(s) 19, 497
BstF5I GGATG 4 cut(s) 47, 259, 532, 570
BstH2I RGCGCY 1 cut(s) 542
BstHHI GCGC 3 cut(s) 242, 285, 541
BstKTI GATC 1 cut(s) 459
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 1 cut(s) 456
BstMCI CGRYCG 1 cut(s) 459
BstMWI GCNNNNNNNGC 2 cut(s) 440, 538
BstNI CCWGG 1 cut(s) 353
BstNSI RCATGY 1 cut(s) 507
BstPAI GACNNNNGTC 1 cut(s) 396
BstSCI CCNGG 2 cut(s) 351, 510
BstSLI GKGCMC 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 297
BstV2I GAAGAC 1 cut(s) 417
BstXI CCANNNNNNTGG 1 cut(s) 76
BsuRI GGCC 3 cut(s) 26, 443, 557
BtgI CCRYGG 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 173
BtsCI GGATG 4 cut(s) 47, 259, 532, 570
Cac8I GCNNGC 4 cut(s) 43, 135, 505, 530
CfoI GCGC 3 cut(s) 242, 285, 541
Cfr10I RCCGGY 1 cut(s) 528
Cfr13I GGNCC 4 cut(s) 24, 25, 143, 442
CviAII CATG 7 cut(s) 130, 217, 262, 480, 504, 553, 559
DdeI CTNAG 3 cut(s) 37, 246, 642
DpnI GATC 1 cut(s) 458
DpnII GATC 1 cut(s) 456
EaeI YGGCCR 1 cut(s) 555
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
EciI GGCGGA 1 cut(s) 40
Eco130I CCWWGG 2 cut(s) 216, 634
Eco24I GRGCYC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 143
Eco47III AGCGCT 1 cut(s) 540
EcoNI CCTNNNNNAGG 2 cut(s) 19, 497
EcoO109I RGGNCCY 2 cut(s) 24, 25
EcoRII CCWGG 1 cut(s) 351
EcoT14I CCWWGG 2 cut(s) 216, 634
EcoT38I GRGCYC 1 cut(s) 28
ErhI CCWWGG 2 cut(s) 216, 634
FaeI CATG 7 cut(s) 133, 220, 265, 483, 507, 556, 562
FalI AAGNNNNNCTT 4 cut(s) 348, 380, 605, 637
FaqI GGGAC 2 cut(s) 198, 253
FatI CATG 7 cut(s) 129, 216, 261, 479, 503, 552, 558
Fnu4HI GCNGC 1 cut(s) 286
FokI GGATG 4 cut(s) 34, 266, 519, 577
FriOI GRGCYC 1 cut(s) 28
Fsp4HI GCNGC 1 cut(s) 286
FspBI CTAG 1 cut(s) 42
FspI TGCGCA 1 cut(s) 284
GlaI GCGC 3 cut(s) 241, 284, 540
GluI GCNGC 1 cut(s) 286
HaeII RGCGCY 1 cut(s) 542
HaeIII GGCC 3 cut(s) 26, 443, 557
HapII CCGG 2 cut(s) 511, 529
HhaI GCGC 3 cut(s) 242, 285, 541
Hin1II CATG 7 cut(s) 133, 220, 265, 483, 507, 556, 562
Hin6I GCGC 3 cut(s) 240, 283, 539
HinP1I GCGC 3 cut(s) 240, 283, 539
HinfI GANTC 3 cut(s) 125, 211, 334
HpaII CCGG 2 cut(s) 511, 529
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 3 cut(s) 196, 546, 643
Hpy188III TCNNGA 4 cut(s) 18, 77, 91, 605
Hpy8I GTNNAC 1 cut(s) 391
Hpy99I CGWCG 2 cut(s) 296, 451
HpyAV CCTTC 5 cut(s) 15, 181, 213, 308, 541
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4IV ACGT 2 cut(s) 32, 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 440, 538
HpyF3I CTNAG 3 cut(s) 37, 246, 642
HpySE526I ACGT 2 cut(s) 32, 437
Hsp92II CATG 7 cut(s) 133, 220, 265, 483, 507, 556, 562
HspAI GCGC 3 cut(s) 240, 283, 539
KroI GCCGGC 1 cut(s) 528
KroNI GCCGGC 1 cut(s) 530
Kzo9I GATC 1 cut(s) 456
LmnI GCTCC 2 cut(s) 220, 361
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 5 cut(s) 48, 161, 185, 244, 541
MaeI CTAG 1 cut(s) 42
MaeII ACGT 2 cut(s) 32, 437
MaeIII GTNAC 2 cut(s) 98, 460
MalI GATC 1 cut(s) 458
MboI GATC 1 cut(s) 456
MboII GAAGA 2 cut(s) 368, 422
MhlI GDGCHC 1 cut(s) 28
MlsI TGGCCA 1 cut(s) 557
MluCI AATT 2 cut(s) 80, 190
MluNI TGGCCA 1 cut(s) 557
MlyI GAGTC 2 cut(s) 220, 343
MmeI TCCRAC 2 cut(s) 170, 303
Mox20I TGGCCA 1 cut(s) 557
MroNI GCCGGC 1 cut(s) 528
MscI TGGCCA 1 cut(s) 557
MseI TTAA 3 cut(s) 83, 366, 395
MslI CAYNNNNRTG 2 cut(s) 557, 563
Msp20I TGGCCA 1 cut(s) 557
MspA1I CMGCKG 1 cut(s) 250
MspCI CTTAAG 1 cut(s) 394
MspI CCGG 2 cut(s) 511, 529
MspR9I CCNGG 2 cut(s) 353, 512
MvaI CCWGG 1 cut(s) 353
MwoI GCNNNNNNNGC 2 cut(s) 440, 538
NaeI GCCGGC 1 cut(s) 530
NciI CCSGG 1 cut(s) 512
NcoI CCATGG 1 cut(s) 216
NdeII GATC 1 cut(s) 456
NgoMIV GCCGGC 1 cut(s) 528
NheI GCTAGC 1 cut(s) 41
NlaIII CATG 7 cut(s) 133, 220, 265, 483, 507, 556, 562
NlaIV GGNNCC 3 cut(s) 26, 27, 444
NmuCI GTSAC 1 cut(s) 98
NsbI TGCGCA 1 cut(s) 284
NspI RCATGY 1 cut(s) 507
PaeI GCATGC 1 cut(s) 507
PcsI WCGNNNNNNNCGW 1 cut(s) 443
PdiI GCCGGC 1 cut(s) 530
PfeI GAWTC 1 cut(s) 125
PfoI TCCNGGA 1 cut(s) 510
PkrI GCNGC 1 cut(s) 287
Ple19I CGATCG 1 cut(s) 459
PleI GAGTC 2 cut(s) 219, 342
PpsI GAGTC 2 cut(s) 219, 342
PshAI GACNNNNGTC 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 3 cut(s) 26, 27, 444
PspOMI GGGCCC 1 cut(s) 24
PspPI GGNCC 4 cut(s) 24, 25, 143, 442
PvuI CGATCG 1 cut(s) 459
PvuII CAGCTG 1 cut(s) 250
RseI CAYNNNNRTG 2 cut(s) 557, 563
SaqAI TTAA 3 cut(s) 83, 366, 395
SatI GCNGC 1 cut(s) 286
Sau3AI GATC 1 cut(s) 456
Sau96I GGNCC 4 cut(s) 24, 25, 143, 442
SchI GAGTC 2 cut(s) 220, 343
ScrFI CCNGG 2 cut(s) 353, 512
SduI GDGCHC 1 cut(s) 28
SfaNI GCATC 5 cut(s) 48, 161, 185, 244, 541
SinI GGWCC 1 cut(s) 143
SmiMI CAYNNNNRTG 2 cut(s) 557, 563
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
SphI GCATGC 1 cut(s) 507
Sse9I AATT 2 cut(s) 80, 190
SsiI CCGC 2 cut(s) 51, 150
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 2 cut(s) 351, 510
StyI CCWWGG 2 cut(s) 216, 634
TaaI ACNGT 1 cut(s) 321
TaiI ACGT 2 cut(s) 35, 440
TaqI TCGA 3 cut(s) 19, 455, 498
TasI AATT 2 cut(s) 80, 190
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 3 cut(s) 83, 366, 395
Tru9I TTAA 3 cut(s) 83, 366, 395
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 1 cut(s) 285
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 3 cut(s) 614, 639, 644
TspGWI ACGGA 1 cut(s) 482
Vha464I CTTAAG 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 143
XagI CCTNNNNNAGG 2 cut(s) 19, 497
XceI RCATGY 1 cut(s) 507
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.