Rroxscaffold_3G00265420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000480
Physical Location & Seq
Forward (+)
58816937 .. 58817349
413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00265420.1

Sequence Viewer

Length: 342 bp
ATGCCTATCTCTCACCGGCGCCTATTCCTCTCCCAAAGCCCCCAATTGTCCACCCAAACAACGCCACACTCCTCTTCGACCTCGCATCATACCCCTCTCCACCCTAATCCTCCACACCCCTTCCTCGGCATCACCCGGTCCCACCGCTACGCCTTCCTCACCGCCAAACCACCACCACCACCTCAATTAGATCGAACACTCTCGGAAGCTGCGGGGCTCATTTCCGAGGAGACGTTCGCCGGAGTGGATGTTCGGTCTACCGTCGATCTTCTCCCCAACCGGGTTTTGCTAGAAACCGAACTAGAAGAGCTCGAATTGGAGCTGGAAGTTGTGGCGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.55

Weight (kDa)

5.73

Isoelectric Point (pI)

61.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 18
AccI GTMKAC 1 cut(s) 257
AciI CCGC 3 cut(s) 145, 162, 212
AcyI GRCGYC 1 cut(s) 19
AfiI CCNNNNNNNGG 2 cut(s) 125, 280
AloI GAACNNNNNNTCC 2 cut(s) 234, 266
AluBI AGCT 3 cut(s) 209, 310, 322
AluI AGCT 3 cut(s) 209, 310, 322
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 209
AspLEI GCGC 2 cut(s) 21, 337
AspS9I GGNCC 1 cut(s) 138
AsuC2I CCSGG 2 cut(s) 136, 281
AsuHPI GGTGA 3 cut(s) 5, 124, 151
AvaII GGWCC 1 cut(s) 138
BanI GGYRCC 1 cut(s) 18
BanII GRGCYC 2 cut(s) 219, 312
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 196
BcnI CCSGG 2 cut(s) 136, 281
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 2 cut(s) 290, 302
BfoI RGCGCY 2 cut(s) 22, 338
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 2 cut(s) 136, 281
Bme18I GGWCC 1 cut(s) 138
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 2 cut(s) 20, 140
BmrFI CCNGG 2 cut(s) 136, 281
BmsI GCATC 2 cut(s) 94, 138
BpuMI CCSGG 2 cut(s) 136, 281
BsaHI GRCGYC 1 cut(s) 19
BsaJI CCNNGG 2 cut(s) 124, 225
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 280
Bse118I RCCGGY 1 cut(s) 15
BseDI CCNNGG 2 cut(s) 124, 225
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 2 cut(s) 125, 280
BseRI GAGGAG 2 cut(s) 61, 242
BseXI GCAGC 1 cut(s) 196
BshNI GGYRCC 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 4 cut(s) 16, 136, 240, 280
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 2 cut(s) 125, 280
BsmAI GTCTC 1 cut(s) 224
BsmBI CGTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 124
Bsp1286I GDGCHC 2 cut(s) 219, 312
Bsp143I GATC 2 cut(s) 190, 265
BspACI CCGC 3 cut(s) 145, 162, 212
BspLI GGNNCC 2 cut(s) 20, 140
BspQI GCTCTTC 1 cut(s) 300
BspT107I GGYRCC 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 15
BssAI RCCGGY 1 cut(s) 15
BssECI CCNNGG 2 cut(s) 124, 225
BssMI GATC 2 cut(s) 190, 265
BssNI GRCGYC 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 2 cut(s) 79, 300
BstACI GRCGYC 1 cut(s) 19
BstF5I GGATG 1 cut(s) 253
BstH2I RGCGCY 2 cut(s) 22, 338
BstHHI GCGC 2 cut(s) 21, 337
BstKTI GATC 2 cut(s) 193, 268
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 2 cut(s) 190, 265
BstSCI CCNGG 2 cut(s) 134, 279
BstV1I GCAGC 1 cut(s) 196
BtsCI GGATG 1 cut(s) 253
CfoI GCGC 2 cut(s) 21, 337
Cfr10I RCCGGY 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 138
CviJI RGCY 5 cut(s) 39, 209, 217, 310, 322
CviKI_1 RGCY 5 cut(s) 39, 209, 217, 310, 322
DinI GGCGCC 1 cut(s) 20
DpnI GATC 2 cut(s) 192, 267
DpnII GATC 2 cut(s) 190, 265
Eam1104I CTCTTC 2 cut(s) 79, 300
EarI CTCTTC 2 cut(s) 79, 300
Ecl136II GAGCTC 1 cut(s) 310
Eco24I GRGCYC 2 cut(s) 219, 312
Eco47I GGWCC 1 cut(s) 138
Eco53kI GAGCTC 1 cut(s) 310
EcoICRI GAGCTC 1 cut(s) 310
EcoT38I GRGCYC 2 cut(s) 219, 312
EgeI GGCGCC 1 cut(s) 20
EheI GGCGCC 1 cut(s) 20
Esp3I CGTCTC 1 cut(s) 224
FaiI YATR 1 cut(s) 90
FaqI GGGAC 1 cut(s) 124
FauI CCCGC 1 cut(s) 205
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 2 cut(s) 219, 312
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 2 cut(s) 290, 302
GlaI GCGC 2 cut(s) 20, 336
GluI GCNGC 1 cut(s) 210
HaeII RGCGCY 2 cut(s) 22, 338
HapII CCGG 4 cut(s) 16, 136, 240, 280
HhaI GCGC 2 cut(s) 21, 337
Hin1I GRCGYC 1 cut(s) 19
Hin6I GCGC 2 cut(s) 19, 335
HinP1I GCGC 2 cut(s) 19, 335
HpaII CCGG 4 cut(s) 16, 136, 240, 280
HphI GGTGA 3 cut(s) 5, 124, 151
Hpy166II GTNNAC 2 cut(s) 51, 258
Hpy188I TCNGA 2 cut(s) 205, 226
Hpy8I GTNNAC 2 cut(s) 51, 258
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 2 cut(s) 130, 163
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4IV ACGT 1 cut(s) 233
HpySE526I ACGT 1 cut(s) 233
Hsp92I GRCGYC 1 cut(s) 19
HspAI GCGC 2 cut(s) 19, 335
KasI GGCGCC 1 cut(s) 18
Kzo9I GATC 2 cut(s) 190, 265
LguI GCTCTTC 1 cut(s) 300
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 5 cut(s) 29, 149, 253, 293, 308
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 2 cut(s) 94, 138
MaeI CTAG 2 cut(s) 290, 302
MaeII ACGT 1 cut(s) 233
MalI GATC 2 cut(s) 192, 267
MboI GATC 2 cut(s) 190, 265
MboII GAAGA 3 cut(s) 66, 260, 317
MfeI CAATTG 1 cut(s) 44
MhlI GDGCHC 2 cut(s) 219, 312
MluCI AATT 3 cut(s) 44, 185, 314
Mly113I GGCGCC 1 cut(s) 19
MnlI CCTC 9 cut(s) 38, 82, 91, 105, 120, 134, 167, 192, 220
MspI CCGG 4 cut(s) 16, 136, 240, 280
MspR9I CCNGG 2 cut(s) 136, 281
MunI CAATTG 1 cut(s) 44
NarI GGCGCC 1 cut(s) 19
NciI CCSGG 2 cut(s) 136, 281
NdeII GATC 2 cut(s) 190, 265
NlaIV GGNNCC 2 cut(s) 20, 140
NmeAIII GCCGAG 1 cut(s) 105
PciSI GCTCTTC 1 cut(s) 300
PkrI GCNGC 1 cut(s) 211
PluTI GGCGCC 1 cut(s) 22
Psp124BI GAGCTC 1 cut(s) 312
PspN4I GGNNCC 2 cut(s) 20, 140
PspPI GGNCC 1 cut(s) 138
SacI GAGCTC 1 cut(s) 312
SapI GCTCTTC 1 cut(s) 300
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 2 cut(s) 190, 265
Sau96I GGNCC 1 cut(s) 138
ScrFI CCNGG 2 cut(s) 136, 281
SduI GDGCHC 2 cut(s) 219, 312
SetI ASST 6 cut(s) 83, 184, 211, 236, 312, 324
SfaNI GCATC 2 cut(s) 94, 138
SfoI GGCGCC 1 cut(s) 20
SgrAI CRCCGGYG 1 cut(s) 15
SinI GGWCC 1 cut(s) 138
Sse9I AATT 3 cut(s) 44, 185, 314
SsiI CCGC 3 cut(s) 145, 162, 212
SspDI GGCGCC 1 cut(s) 18
SspMI CTAG 2 cut(s) 290, 302
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 2 cut(s) 134, 279
TaaI ACNGT 1 cut(s) 262
TaiI ACGT 1 cut(s) 236
TaqI TCGA 4 cut(s) 77, 193, 264, 312
TaqII GACCGA 1 cut(s) 243
TasI AATT 3 cut(s) 44, 185, 314
TseI GCWGC 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 138
XmiI GTMKAC 1 cut(s) 257
XspI CTAG 2 cut(s) 290, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.