Rorug05G0252000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000480
Physical Location & Seq
Reverse (-)
27695794 .. 27697409
1616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0252000.1

Sequence Viewer

Length: 804 bp
ATGCATCCATCCATCAGTTTATTTCCAAAAAGGGAGTTCTACGACAACCAGATAGTAGATGGTCCAAATGTCATAGAAAAAAGCTATGAGAGGTGCTTCCTCAAGGGGAAAATGTACCAATCCTATTCCTTCATAAATGTAGCCAATGGAAAAGAAGAATTTGATCATAGATTTAGTTGGAAAAATATGGTGGAGGTTGCTGTAGTCTCTGGGATAATAGCAAGCCTTTATAAAGAATTCATTGGAACAAAGAAGAAAGTTAGTATTGGGGAGGTTGCTGTAGTCTCTGGGATAGTAGCAAGCCTTTATAAAGGTGGTGAAGAAGATGTGATAATTATGTCTACTGTCCGATGTAATGGGAACGGGTCAGTTGGTTTCTTGTCGAAACAGCAAAGAGCAATTGTTGCCTTAACACATGCAAGGTATTGCCTTTGGATATTGGGGAATGCGTCAACTTTGATTGCTAGTGACTCTGTTTGGAAGAAGCTAGTCCTTGATGCCAAGAAACAAAACTGTTTTTATAATGCTGATGAAGACAGCAACTTGGCTCAGTCTATTACAGCTGCCCTGCTGGAGCTTGACCAACTTCATTCTCTGCTTGATATCGACTCTCTGCTGTTCAAAAACGCTATATGGAAGGTTTGCTTCACTCATGACTTTTTGAACTCCATAACAAAAATTAAAGACACTGTGATTCTTTGCGAAGTGCTTGCGTTATTAACCAAGCTTTCGAGTGGATGGTGCCGACCTCTTGAGGACAAAGGAGCTTTATCATACTTCTGCTCAACTGTTAGAGAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

29.87

Weight (kDa)

7.54

Isoelectric Point (pI)

29.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_12 PF13087 1 - 90 3.7e-11 AAA domain
AAA_12 PF13087 103 - 150 9.9e-13 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 231, 309, 522
AccB1I GGYRCC 1 cut(s) 741
AccI GTMKAC 1 cut(s) 341
AcsI RAATTY 2 cut(s) 158, 236
AfaI GTAC 1 cut(s) 116
AgsI TTSAA 2 cut(s) 622, 664
AluBI AGCT 6 cut(s) 84, 487, 563, 577, 727, 767
AluI AGCT 6 cut(s) 84, 487, 563, 577, 727, 767
Alw26I GTCTC 2 cut(s) 211, 289
ApeKI GCWGC 1 cut(s) 563
ApoI RAATTY 2 cut(s) 158, 236
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 329
AvaII GGWCC 1 cut(s) 62
BanI GGYRCC 1 cut(s) 741
BbsI GAAGAC 1 cut(s) 540
BbvI GCAGC 1 cut(s) 550
BccI CCATC 4 cut(s) 16, 20, 53, 732
BcgI CGANNNNNNTGC 2 cut(s) 692, 726
BclI TGATCA 1 cut(s) 163
BcoDI GTCTC 2 cut(s) 211, 289
BfaI CTAG 2 cut(s) 465, 488
BfmI CTRYAG 2 cut(s) 201, 279
BisI GCNGC 1 cut(s) 564
BlsI GCNGC 1 cut(s) 565
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 743
BmsI GCATC 2 cut(s) 13, 487
BpiI GAAGAC 1 cut(s) 540
BpmI CTGGAG 1 cut(s) 593
BpuEI CTTGAG 2 cut(s) 86, 773
BseGI GGATG 3 cut(s) 4, 8, 743
BseMII CTCAG 1 cut(s) 563
BseXI GCAGC 1 cut(s) 550
BshNI GGYRCC 1 cut(s) 741
BsmAI GTCTC 2 cut(s) 211, 289
BsmI GAATGC 1 cut(s) 451
Bsp143I GATC 1 cut(s) 163
BspCNI CTCAG 1 cut(s) 562
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 1 cut(s) 743
BspT107I GGYRCC 1 cut(s) 741
BssMI GATC 1 cut(s) 163
Bst4CI ACNGT 4 cut(s) 346, 515, 691, 790
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 3 cut(s) 223, 301, 711
BstDEI CTNAG 1 cut(s) 549
BstF5I GGATG 3 cut(s) 4, 8, 743
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 2 cut(s) 211, 289
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNSI RCATGY 1 cut(s) 419
BstSFI CTRYAG 2 cut(s) 201, 279
BstV1I GCAGC 1 cut(s) 550
BstV2I GAAGAC 1 cut(s) 540
BtsCI GGATG 3 cut(s) 4, 8, 743
BtsIMutI CAGTG 1 cut(s) 687
Cac8I GCNNGC 3 cut(s) 223, 301, 711
CciI TCATGA 1 cut(s) 652
Cfr13I GGNCC 1 cut(s) 62
CseI GACGC 1 cut(s) 438
Csp6I GTAC 1 cut(s) 115
CviAII CATG 2 cut(s) 416, 653
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 1 cut(s) 549
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Eco32I GATATC 1 cut(s) 604
Eco47I GGWCC 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 236
EcoRV GATATC 1 cut(s) 604
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 419, 656
FalI AAGNNNNNCTT 2 cut(s) 629, 661
FatI CATG 2 cut(s) 415, 652
FbaI TGATCA 1 cut(s) 163
FblI GTMKAC 1 cut(s) 341
Fnu4HI GCNGC 1 cut(s) 564
FokI GGATG 1 cut(s) 750
Fsp4HI GCNGC 1 cut(s) 564
FspBI CTAG 2 cut(s) 465, 488
GluI GCNGC 1 cut(s) 564
GsuI CTGGAG 1 cut(s) 593
HgaI GACGC 1 cut(s) 438
Hin1II CATG 2 cut(s) 419, 656
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 3 cut(s) 470, 608, 694
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 2 cut(s) 342, 453
Hpy188I TCNGA 1 cut(s) 350
Hpy188III TCNNGA 2 cut(s) 653, 752
Hpy8I GTNNAC 2 cut(s) 342, 453
HpyAV CCTTC 2 cut(s) 139, 631
HpyCH4III ACNGT 4 cut(s) 346, 515, 691, 790
HpyCH4V TGCA 2 cut(s) 4, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 1 cut(s) 549
Hsp92II CATG 2 cut(s) 419, 656
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 2 cut(s) 574, 764
LpnPI CCDG 5 cut(s) 62, 195, 273, 557, 581
Lsp1109I GCAGC 1 cut(s) 550
LweI GCATC 2 cut(s) 13, 487
MaeI CTAG 2 cut(s) 465, 488
MaeIII GTNAC 1 cut(s) 467
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 6 cut(s) 167, 265, 332, 335, 493, 545
MfeI CAATTG 1 cut(s) 399
MluCI AATT 5 cut(s) 158, 236, 333, 399, 678
MlyI GAGTC 2 cut(s) 464, 602
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 6 cut(s) 84, 110, 187, 265, 748, 759
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 410, 681, 719
MspA1I CMGCKG 1 cut(s) 563
MunI CAATTG 1 cut(s) 399
Mva1269I GAATGC 1 cut(s) 451
MwoI GCNNNNNNNGC 1 cut(s) 404
NdeII GATC 1 cut(s) 163
NlaIII CATG 2 cut(s) 419, 656
NlaIV GGNNCC 1 cut(s) 743
NmuCI GTSAC 1 cut(s) 467
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 419
PagI TCATGA 1 cut(s) 652
PctI GAATGC 1 cut(s) 451
PfeI GAWTC 1 cut(s) 694
PkrI GCNGC 1 cut(s) 565
PleI GAGTC 2 cut(s) 464, 602
PpsI GAGTC 2 cut(s) 464, 602
PsiI TTATAA 3 cut(s) 231, 309, 522
PspN4I GGNNCC 1 cut(s) 743
PspPI GGNCC 1 cut(s) 62
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SaqAI TTAA 3 cut(s) 410, 681, 719
SatI GCNGC 1 cut(s) 564
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 2 cut(s) 464, 602
SfaNI GCATC 2 cut(s) 13, 487
SfcI CTRYAG 2 cut(s) 201, 279
SinI GGWCC 1 cut(s) 62
SmlI CTYRAG 2 cut(s) 101, 752
SmoI CTYRAG 2 cut(s) 101, 752
Sse9I AATT 5 cut(s) 158, 236, 333, 399, 678
SspMI CTAG 2 cut(s) 465, 488
TaaI ACNGT 4 cut(s) 346, 515, 691, 790
TaqI TCGA 3 cut(s) 383, 606, 731
TasI AATT 5 cut(s) 158, 236, 333, 399, 678
TfiI GAWTC 1 cut(s) 694
Tru1I TTAA 3 cut(s) 410, 681, 719
Tru9I TTAA 3 cut(s) 410, 681, 719
TscAI CASTG 1 cut(s) 694
TseFI GTSAC 1 cut(s) 467
TseI GCWGC 1 cut(s) 563
Tsp45I GTSAC 1 cut(s) 467
TspDTI ATGAA 4 cut(s) 121, 229, 546, 578
TspRI CASTG 1 cut(s) 694
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 2 cut(s) 158, 236
XceI RCATGY 1 cut(s) 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 56
XmiI GTMKAC 1 cut(s) 341
XspI CTAG 2 cut(s) 465, 488
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.