Rmu_sc0005599.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005599.1
OG0000480
Physical Location & Seq
Reverse (-)
53582 .. 53917
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005599.1_g000014.1.cds

Sequence Viewer

Length: 246 bp
atggttgaattagcctccgtccttgagggcaaaaaccaagagataacgaagctgaagaatgatctggccttggctctaattgatgaagagaagaggtgctacataggtcttgatgagtttgaccggcttttcgggtttgaacctatggcttattctcccatctgcggcatgatttcaggagatgttccttcgtcggcatctagcgcatctggcgatgaagatgaggatgtgtcatctgatgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.74

Weight (kDa)

4.05

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 165
AcuI CTGAAG 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 2 cut(s) 8, 140
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
AoxI GGCC 1 cut(s) 66
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
AspLEI GCGC 1 cut(s) 206
BarI GAAGNNNNNNTAC 2 cut(s) 83, 115
BccI CCATC 1 cut(s) 167
BfaI CTAG 1 cut(s) 201
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
BmsI GCATC 3 cut(s) 206, 215, 229
BpuEI CTTGAG 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse118I RCCGGY 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 164
BshFI GGCC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 164
BsnI GGCC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 1 cut(s) 165
BspANI GGCC 1 cut(s) 68
BsrFI RCCGGY 1 cut(s) 123
BssAI RCCGGY 1 cut(s) 123
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 1 cut(s) 61
BssT1I CCWWGG 1 cut(s) 69
Bst6I CTCTTC 2 cut(s) 81, 86
BstF5I GGATG 1 cut(s) 232
BstHHI GCGC 1 cut(s) 206
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 2 cut(s) 203, 210
BsuRI GGCC 1 cut(s) 68
BtgZI GCGATG 1 cut(s) 228
BtsCI GGATG 1 cut(s) 232
CfoI GCGC 1 cut(s) 206
Cfr10I RCCGGY 1 cut(s) 123
CviAII CATG 2 cut(s) 169, 243
CviJI RGCY 6 cut(s) 14, 52, 68, 74, 127, 149
CviKI_1 RGCY 6 cut(s) 14, 52, 68, 74, 127, 149
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 81, 86
EarI CTCTTC 2 cut(s) 81, 86
Eco130I CCWWGG 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 69
EcoT22I ATGCAT 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 2 cut(s) 172, 246
FaiI YATR 4 cut(s) 104, 146, 170, 244
FatI CATG 2 cut(s) 168, 242
Fnu4HI GCNGC 1 cut(s) 166
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 166
FspBI CTAG 1 cut(s) 201
GlaI GCGC 1 cut(s) 205
GluI GCNGC 1 cut(s) 166
HaeIII GGCC 1 cut(s) 68
HapII CCGG 1 cut(s) 124
HhaI GCGC 1 cut(s) 206
Hin1II CATG 2 cut(s) 172, 246
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HpaII CCGG 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 2 cut(s) 110, 177
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 210
Hsp92II CATG 2 cut(s) 172, 246
HspAI GCGC 1 cut(s) 204
Kzo9I GATC 1 cut(s) 61
LpnPI CCDG 4 cut(s) 50, 137, 162, 195
LweI GCATC 3 cut(s) 206, 215, 229
MaeI CTAG 1 cut(s) 201
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 4 cut(s) 67, 98, 103, 230
MluCI AATT 2 cut(s) 8, 78
MnlI CCTC 4 cut(s) 19, 25, 87, 217
Mph1103I ATGCAT 1 cut(s) 244
MspI CCGG 1 cut(s) 124
MwoI GCNNNNNNNGC 2 cut(s) 203, 210
NdeII GATC 1 cut(s) 61
NlaIII CATG 2 cut(s) 172, 246
NsiI ATGCAT 1 cut(s) 244
PkrI GCNGC 1 cut(s) 167
SatI GCNGC 1 cut(s) 166
Sau3AI GATC 1 cut(s) 61
SetI ASST 4 cut(s) 54, 98, 109, 145
SfaNI GCATC 3 cut(s) 206, 215, 229
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 2 cut(s) 8, 78
SsiI CCGC 1 cut(s) 165
SspMI CTAG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 69
TasI AATT 2 cut(s) 8, 78
TauI GCSGC 1 cut(s) 168
TspDTI ATGAA 2 cut(s) 99, 231
TspGWI ACGGA 1 cut(s) 7
XspI CTAG 1 cut(s) 201
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.