Rroxscaffold_7G00195200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000480
Physical Location & Seq
Forward (+)
37470109 .. 37474253
4145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195200.1

Sequence Viewer

Length: 621 bp
ATGGCTCGCATTAAGTATGCGGACTTGGCGAAAATCCGGAAAAATAATTTGGAACAAATTGGTGAACCGGTGTCTTGGAAGCCAACGGACCATCATATAGAGAAATATGTCAAAGTGGATTCCATCTCAAAGTCTATTAAACTTTCGTCGATTCTTGACGATGCCAACATTTATATCGGCGAGAACGTGCACGGAGACACACCGATATTTTCTCCCTATCACACGAGATTCATCGGGTTCCCAATTTATCTTGTATTCCGGCTTATATGGGTGGTTATTGGCTTGCACCCAATGCAACTTAATCCAAACGCTTATCTCTTTTTGTTTGCTTTCTTGATCATGGGCTGGAACTCCTTACATGTACTTAAATCTCAAGGCGGCGGGGTGTGCGGCGATATCCTCTTGCGGTTTCACAACTCCGTTCGCTCTCGGCTCTTCGACTCCTCCTCCATAGTTTCAAGTGGGAGCGACTTGGTAGAAAGTTCCCCAACCTTAAGCCTCGAACCGGTAGCTAAGCAAGATCTACATCTTGGCTCCTCAAATCTTCTTATAAAGGTTTGTTCTTCTGCTCCAACTTATCTATATATTTCCGGCCAAGAACACCGACTTTCCTCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.06

Weight (kDa)

8.5

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 551
AccIII TCCGGA 1 cut(s) 36
AciI CCGC 5 cut(s) 20, 378, 381, 390, 406
AcoI YGGCCR 1 cut(s) 592
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 1 cut(s) 505
AflII CTTAAG 1 cut(s) 493
AflIII ACRYGT 1 cut(s) 358
AgeI ACCGGT 2 cut(s) 67, 505
AgsI TTSAA 1 cut(s) 459
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 1 cut(s) 512
AluI AGCT 1 cut(s) 512
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 189
Alw44I GTGCAC 1 cut(s) 188
Aor13HI TCCGGA 1 cut(s) 36
AoxI GGCC 1 cut(s) 592
ApaLI GTGCAC 1 cut(s) 188
AsiGI ACCGGT 2 cut(s) 67, 505
AspS9I GGNCC 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 74
AvaII GGWCC 1 cut(s) 88
BaeGI GKGCMC 1 cut(s) 192
BauI CACGAG 1 cut(s) 223
Bbv12I GWGCWC 1 cut(s) 192
BccI CCATC 2 cut(s) 99, 131
BclI TGATCA 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 189
BfrI CTTAAG 1 cut(s) 493
BglII AGATCT 1 cut(s) 520
BisI GCNGC 2 cut(s) 379, 391
BlpI GCTNAGC 1 cut(s) 513
BlsI GCNGC 2 cut(s) 380, 392
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 88
BmiI GGNNCC 2 cut(s) 239, 535
BmsI GCATC 1 cut(s) 151
Bpu1102I GCTNAGC 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 357
BsaBI GATNNNNATC 1 cut(s) 525
BsaWI WCCGGW 3 cut(s) 36, 67, 505
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 1 cut(s) 505
Bse118I RCCGGY 2 cut(s) 67, 505
Bse8I GATNNNNATC 1 cut(s) 525
BseAI TCCGGA 1 cut(s) 36
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 1 cut(s) 505
BseRI GAGGAG 3 cut(s) 433, 436, 526
BseSI GKGCMC 1 cut(s) 192
BshFI GGCC 1 cut(s) 594
BshTI ACCGGT 2 cut(s) 67, 505
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 5 cut(s) 37, 68, 259, 506, 591
BslI CCNNNNNNNGG 1 cut(s) 505
BsmAI GTCTC 1 cut(s) 189
BsnI GGCC 1 cut(s) 594
Bsp1286I GDGCHC 1 cut(s) 192
Bsp13I TCCGGA 1 cut(s) 36
Bsp143I GATC 2 cut(s) 336, 520
Bsp1720I GCTNAGC 1 cut(s) 513
BspACI CCGC 5 cut(s) 20, 378, 381, 390, 406
BspANI GGCC 1 cut(s) 594
BspEI TCCGGA 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 239, 535
BspQI GCTCTTC 1 cut(s) 440
BspTI CTTAAG 1 cut(s) 493
BsrFI RCCGGY 2 cut(s) 67, 505
BssAI RCCGGY 2 cut(s) 67, 505
BssMI GATC 2 cut(s) 336, 520
BssSI CACGAG 1 cut(s) 223
Bst2BI CACGAG 1 cut(s) 223
Bst6I CTCTTC 1 cut(s) 440
BstAFI CTTAAG 1 cut(s) 493
BstAPI GCANNNNNTGC 1 cut(s) 292
BstC8I GCNNGC 2 cut(s) 7, 284
BstDEI CTNAG 1 cut(s) 513
BstKTI GATC 2 cut(s) 339, 523
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 2 cut(s) 336, 520
BstMWI GCNNNNNNNGC 3 cut(s) 26, 292, 387
BstNSI RCATGY 1 cut(s) 362
BstSLI GKGCMC 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
BsuRI GGCC 1 cut(s) 594
Cac8I GCNNGC 2 cut(s) 7, 284
Cfr10I RCCGGY 2 cut(s) 67, 505
Cfr13I GGNCC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 362
CspAI ACCGGT 2 cut(s) 67, 505
CviAII CATG 2 cut(s) 340, 359
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 1 cut(s) 513
DpnI GATC 2 cut(s) 338, 522
DpnII GATC 2 cut(s) 336, 520
EaeI YGGCCR 1 cut(s) 592
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 88
EcoRV GATATC 1 cut(s) 397
FaeI CATG 2 cut(s) 343, 362
FatI CATG 2 cut(s) 339, 358
FauI CCCGC 1 cut(s) 374
FbaI TGATCA 1 cut(s) 336
Fnu4HI GCNGC 2 cut(s) 379, 391
Fsp4HI GCNGC 2 cut(s) 379, 391
GluI GCNGC 2 cut(s) 379, 391
HaeIII GGCC 1 cut(s) 594
HapII CCGG 5 cut(s) 37, 68, 259, 506, 591
Hin1II CATG 2 cut(s) 343, 362
HinfI GANTC 4 cut(s) 119, 151, 228, 440
HpaII CCGG 5 cut(s) 37, 68, 259, 506, 591
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 2 cut(s) 65, 190
Hpy188III TCNNGA 3 cut(s) 37, 155, 334
Hpy8I GTNNAC 2 cut(s) 65, 190
Hpy99I CGWCG 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 3 cut(s) 190, 286, 295
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 292, 387
HpyF3I CTNAG 1 cut(s) 513
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 2 cut(s) 343, 362
Kpn2I TCCGGA 1 cut(s) 36
Ksp22I TGATCA 1 cut(s) 336
Kzo9I GATC 2 cut(s) 336, 520
LguI GCTCTTC 1 cut(s) 440
LmnI GCTCC 3 cut(s) 465, 539, 574
LpnPI CCDG 6 cut(s) 50, 81, 272, 331, 519, 604
LweI GCATC 1 cut(s) 151
MaeII ACGT 1 cut(s) 186
MalI GATC 2 cut(s) 338, 522
MboI GATC 2 cut(s) 336, 520
MboII GAAGA 3 cut(s) 427, 536, 555
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 3 cut(s) 46, 57, 243
MlyI GAGTC 1 cut(s) 434
MmeI TCCRAC 1 cut(s) 596
MnlI CCTC 5 cut(s) 410, 454, 457, 509, 547
MroI TCCGGA 1 cut(s) 36
MseI TTAA 5 cut(s) 12, 138, 300, 366, 494
MspCI CTTAAG 1 cut(s) 493
MspI CCGG 5 cut(s) 37, 68, 259, 506, 591
MwoI GCNNNNNNNGC 3 cut(s) 26, 292, 387
NdeII GATC 2 cut(s) 336, 520
NlaIII CATG 2 cut(s) 343, 362
NlaIV GGNNCC 2 cut(s) 239, 535
NmeAIII GCCGAG 1 cut(s) 409
NspI RCATGY 1 cut(s) 362
PciI ACATGT 1 cut(s) 358
PciSI GCTCTTC 1 cut(s) 440
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 3 cut(s) 119, 151, 228
PinAI ACCGGT 2 cut(s) 67, 505
PkrI GCNGC 2 cut(s) 380, 392
PleI GAGTC 1 cut(s) 434
PpsI GAGTC 1 cut(s) 434
PscI ACATGT 1 cut(s) 358
PsiI TTATAA 1 cut(s) 551
PspN4I GGNNCC 2 cut(s) 239, 535
PspPI GGNCC 1 cut(s) 88
PsuI RGATCY 1 cut(s) 520
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
SapI GCTCTTC 1 cut(s) 440
SaqAI TTAA 5 cut(s) 12, 138, 300, 366, 494
SatI GCNGC 2 cut(s) 379, 391
Sau3AI GATC 2 cut(s) 336, 520
Sau96I GGNCC 1 cut(s) 88
SchI GAGTC 1 cut(s) 434
SduI GDGCHC 1 cut(s) 192
SetI ASST 4 cut(s) 189, 494, 514, 558
SfaNI GCATC 1 cut(s) 151
SinI GGWCC 1 cut(s) 88
SmlI CTYRAG 2 cut(s) 372, 493
SmoI CTYRAG 2 cut(s) 372, 493
Sse9I AATT 3 cut(s) 46, 57, 243
SsiI CCGC 5 cut(s) 20, 378, 381, 390, 406
TaiI ACGT 1 cut(s) 189
TaqI TCGA 3 cut(s) 149, 438, 501
TasI AATT 3 cut(s) 46, 57, 243
TatI WGTACW 1 cut(s) 361
TauI GCSGC 2 cut(s) 381, 393
TfiI GAWTC 3 cut(s) 119, 151, 228
Tru1I TTAA 5 cut(s) 12, 138, 300, 366, 494
Tru9I TTAA 5 cut(s) 12, 138, 300, 366, 494
TspDTI ATGAA 1 cut(s) 220
TspGWI ACGGA 3 cut(s) 101, 207, 409
Vha464I CTTAAG 1 cut(s) 493
VneI GTGCAC 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 88
XceI RCATGY 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.