Rmu_sc0002986.1_g000031

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002986.1
OG0000480
Physical Location & Seq
Forward (+)
140160 .. 140725
566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002986.1_g000031.1.cds

Sequence Viewer

Length: 483 bp
atgtcggaggtccgtaagctgaaggcggagatttgcgatttgtctgcggaggttcagcactccaaagatcacgctgaacacctaaaaattgagctacgcgaatgctacaggcgggagaggttcttagatgaagttagggttcaaagtcgtgaagatggctactgtgatgcggtgatcgaatatcatcagcgcatgattatgaacttctcggatattaaccgatctcaatctttcgtcttgcaagattctctggaacataccatgtcagaggtccgtaagctgaaggtggagattcacgatttgtcagcggaggttcagcattccaaagatcacgctgaacacctaaaaattgagctacgcgaatgctacaggcgggagaggttcttagacgaagtcagggttcaaagtcgtgaagatggctaccgtgatgcggtgatcgaatatcgtcagcgcatgattatgaacttcccggagattaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

19.4

Weight (kDa)

5.74

Isoelectric Point (pI)

62.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 99, 360
AciI CCGC 7 cut(s) 26, 47, 112, 170, 308, 373, 431
AcuI CTGAAG 2 cut(s) 41, 302
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 2 cut(s) 143, 404
AluBI AGCT 4 cut(s) 19, 94, 280, 355
AluI AGCT 4 cut(s) 19, 94, 280, 355
AspLEI GCGC 2 cut(s) 192, 453
AspS9I GGNCC 2 cut(s) 10, 271
AsuC2I CCSGG 1 cut(s) 470
AsuHPI GGTGA 2 cut(s) 184, 445
AvaII GGWCC 2 cut(s) 10, 271
BccI CCATC 2 cut(s) 149, 410
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BcnI CCSGG 1 cut(s) 470
BfmI CTRYAG 2 cut(s) 106, 367
Bme1390I CCNGG 1 cut(s) 470
Bme18I GGWCC 2 cut(s) 10, 271
BmgT120I GGNCC 2 cut(s) 10, 271
BmrFI CCNGG 1 cut(s) 470
BmsI GCATC 2 cut(s) 157, 418
BpuMI CCSGG 1 cut(s) 470
BsaBI GATNNNNATC 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse8I GATNNNNATC 1 cut(s) 226
BseJI GATNNNNATC 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 430
Bsh1236I CGCG 2 cut(s) 99, 360
BsiSI CCGG 1 cut(s) 470
BslI CCNNNNNNNGG 1 cut(s) 430
BsmI GAATGC 3 cut(s) 107, 319, 368
Bsp143I GATC 5 cut(s) 67, 174, 221, 328, 435
BspACI CCGC 7 cut(s) 26, 47, 112, 170, 308, 373, 431
BspFNI CGCG 2 cut(s) 99, 360
BssMI GATC 5 cut(s) 67, 174, 221, 328, 435
Bst4CI ACNGT 2 cut(s) 164, 425
BstDEI CTNAG 2 cut(s) 124, 385
BstFNI CGCG 2 cut(s) 99, 360
BstHHI GCGC 2 cut(s) 192, 453
BstKTI GATC 5 cut(s) 70, 177, 224, 331, 438
BstMBI GATC 5 cut(s) 67, 174, 221, 328, 435
BstSCI CCNGG 1 cut(s) 468
BstSFI CTRYAG 2 cut(s) 106, 367
BstUI CGCG 2 cut(s) 99, 360
CfoI GCGC 2 cut(s) 192, 453
Cfr13I GGNCC 2 cut(s) 10, 271
CviAII CATG 3 cut(s) 193, 262, 454
CviJI RGCY 6 cut(s) 19, 94, 159, 280, 355, 420
CviKI_1 RGCY 6 cut(s) 19, 94, 159, 280, 355, 420
DdeI CTNAG 2 cut(s) 124, 385
DpnI GATC 5 cut(s) 69, 176, 223, 330, 437
DpnII GATC 5 cut(s) 67, 174, 221, 328, 435
EciI GGCGGA 1 cut(s) 41
Eco47I GGWCC 2 cut(s) 10, 271
Eco57I CTGAAG 2 cut(s) 41, 302
FaeI CATG 3 cut(s) 196, 265, 457
FaiI YATR 6 cut(s) 194, 200, 258, 263, 455, 461
FatI CATG 3 cut(s) 192, 261, 453
FauI CCCGC 2 cut(s) 105, 366
GlaI GCGC 2 cut(s) 191, 452
HapII CCGG 1 cut(s) 470
HhaI GCGC 2 cut(s) 192, 453
Hin1II CATG 3 cut(s) 196, 265, 457
Hin6I GCGC 2 cut(s) 190, 451
HinP1I GCGC 2 cut(s) 190, 451
HinfI GANTC 2 cut(s) 245, 292
HpaII CCGG 1 cut(s) 470
HphI GGTGA 2 cut(s) 184, 445
Hpy188I TCNGA 3 cut(s) 7, 211, 268
Hpy188III TCNNGA 4 cut(s) 149, 251, 296, 410
HpyAV CCTTC 2 cut(s) 16, 277
HpyCH4III ACNGT 2 cut(s) 164, 425
HpyCH4V TGCA 1 cut(s) 241
HpyF3I CTNAG 2 cut(s) 124, 385
Hsp92II CATG 3 cut(s) 196, 265, 457
HspAI GCGC 2 cut(s) 190, 451
Kzo9I GATC 5 cut(s) 67, 174, 221, 328, 435
LpnPI CCDG 4 cut(s) 94, 236, 355, 382
LweI GCATC 2 cut(s) 157, 418
MalI GATC 5 cut(s) 69, 176, 223, 330, 437
MboI GATC 5 cut(s) 67, 174, 221, 328, 435
MboII GAAGA 2 cut(s) 164, 425
MluCI AATT 2 cut(s) 87, 348
MnlI CCTC 5 cut(s) 43, 111, 262, 304, 372
MseI TTAA 2 cut(s) 216, 477
MslI CAYNNNNRTG 2 cut(s) 197, 458
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 1 cut(s) 470
MspR9I CCNGG 1 cut(s) 470
Mva1269I GAATGC 3 cut(s) 107, 319, 368
MvnI CGCG 2 cut(s) 99, 360
NciI CCSGG 1 cut(s) 470
NdeII GATC 5 cut(s) 67, 174, 221, 328, 435
NlaIII CATG 3 cut(s) 196, 265, 457
PctI GAATGC 3 cut(s) 107, 319, 368
PfeI GAWTC 2 cut(s) 245, 292
PflFI GACNNNGTC 1 cut(s) 392
PfoI TCCNGGA 1 cut(s) 468
PspPI GGNCC 2 cut(s) 10, 271
PsyI GACNNNGTC 1 cut(s) 392
RseI CAYNNNNRTG 2 cut(s) 197, 458
SaqAI TTAA 2 cut(s) 216, 477
Sau3AI GATC 5 cut(s) 67, 174, 221, 328, 435
Sau96I GGNCC 2 cut(s) 10, 271
ScrFI CCNGG 1 cut(s) 470
SfaNI GCATC 2 cut(s) 157, 418
SfcI CTRYAG 2 cut(s) 106, 367
SinI GGWCC 2 cut(s) 10, 271
SmiMI CAYNNNNRTG 2 cut(s) 197, 458
Sse9I AATT 2 cut(s) 87, 348
SsiI CCGC 7 cut(s) 26, 47, 112, 170, 308, 373, 431
StyD4I CCNGG 1 cut(s) 468
TaaI ACNGT 2 cut(s) 164, 425
TaqI TCGA 2 cut(s) 177, 438
TasI AATT 2 cut(s) 87, 348
TfiI GAWTC 2 cut(s) 245, 292
Tru1I TTAA 2 cut(s) 216, 477
Tru9I TTAA 2 cut(s) 216, 477
TspDTI ATGAA 3 cut(s) 144, 215, 476
TspGWI ACGGA 1 cut(s) 263
Tth111I GACNNNGTC 1 cut(s) 392
VpaK11BI GGWCC 2 cut(s) 10, 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.