Rmu_co8071304.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8071304.1
OG0000480
Physical Location & Seq
Reverse (-)
2 .. 420
419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8071304.1_g000001.1.cds

Sequence Viewer

Length: 344 bp
ctgccaccgaaagctttggagctcaagttcaagaaaagggatggttcctatattttagcaggggaatctcttgcttccaacggcttggcggcatcagcggttgcgggtgccttcgtagcatcgcaccctaaactggggggtccctccaagagccctatggcgttgtacgatgacgtttgtgcttctcaactcgatgctcttctggcatcccattgcctcctacgtggcattgatgttctccattccaaacaacaacagaaacttgacgaagcgaatcgtaaactcgagttcaaggagaaagagcttgacgatcagatgaggacgatggttgaattagcctccgt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.39

Weight (kDa)

7.02

Isoelectric Point (pI)

28.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 107
AciI CCGC 3 cut(s) 89, 98, 104
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 2 cut(s) 133, 134
AgsI TTSAA 3 cut(s) 31, 292, 332
AloI GAACNNNNNNTCC 2 cut(s) 11, 43
AluBI AGCT 3 cut(s) 14, 22, 304
AluI AGCT 3 cut(s) 14, 22, 304
Alw21I GWGCWC 1 cut(s) 24
Ama87I CYCGRG 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 140
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 1 cut(s) 140
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 2 cut(s) 24, 155
Bbv12I GWGCWC 1 cut(s) 24
BccI CCATC 2 cut(s) 35, 319
BceAI ACGGC 1 cut(s) 97
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 140
BmeT110I CYCGRG 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 140
BmiI GGNNCC 4 cut(s) 46, 109, 141, 142
BmrI ACTGGG 1 cut(s) 143
BmsI GCATC 4 cut(s) 101, 128, 184, 215
BmuI ACTGGG 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 8
BsaAI YACGTR 1 cut(s) 224
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 134
Bse1I ACTGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 211
BseGI GGATG 2 cut(s) 46, 206
BseLI CCNNNNNNNGG 2 cut(s) 133, 134
BseMI GCAATG 1 cut(s) 211
BseNI ACTGG 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 2 cut(s) 133, 134
BsmFI GGGAC 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 2 cut(s) 24, 155
Bsp143I GATC 1 cut(s) 310
BspACI CCGC 3 cut(s) 89, 98, 104
BspLI GGNNCC 4 cut(s) 46, 109, 141, 142
BspQI GCTCTTC 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 211
BsrI ACTGG 1 cut(s) 138
BssMI GATC 1 cut(s) 310
Bst6I CTCTTC 1 cut(s) 204
BstBAI YACGTR 1 cut(s) 224
BstF5I GGATG 2 cut(s) 46, 206
BstKTI GATC 1 cut(s) 313
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 3 cut(s) 95, 116, 203
BstXI CCANNNNNNTGG 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 105
BtsCI GGATG 2 cut(s) 46, 206
Cfr13I GGNCC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 166
CviJI RGCY 6 cut(s) 14, 22, 84, 153, 304, 338
CviKI_1 RGCY 6 cut(s) 14, 22, 84, 153, 304, 338
CviQI GTAC 1 cut(s) 166
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Ecl136II GAGCTC 1 cut(s) 22
Eco24I GRGCYC 2 cut(s) 24, 155
Eco47I GGWCC 1 cut(s) 140
Eco53kI GAGCTC 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 22
EcoO109I RGGNCCY 1 cut(s) 140
EcoT38I GRGCYC 2 cut(s) 24, 155
FaiI YATR 2 cut(s) 51, 158
FaqI GGGAC 1 cut(s) 126
FauI CCCGC 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 2 cut(s) 53, 193
FriOI GRGCYC 2 cut(s) 24, 155
Fsp4HI GCNGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 90
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 2 cut(s) 65, 274
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 1 cut(s) 315
Hpy188III TCNNGA 1 cut(s) 31
Hpy8I GTNNAC 1 cut(s) 281
HpyAV CCTTC 1 cut(s) 121
HpyCH4IV ACGT 2 cut(s) 174, 223
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 116, 203
HpySE526I ACGT 2 cut(s) 174, 223
KflI GGGWCCC 1 cut(s) 140
Kzo9I GATC 1 cut(s) 310
LguI GCTCTTC 1 cut(s) 204
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 3 cut(s) 45, 119, 188
LweI GCATC 4 cut(s) 101, 128, 184, 215
MaeII ACGT 2 cut(s) 174, 223
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 1 cut(s) 191
MhlI GDGCHC 2 cut(s) 24, 155
MluCI AATT 1 cut(s) 332
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 3 cut(s) 154, 227, 312
MspA1I CMGCKG 1 cut(s) 98
MwoI GCNNNNNNNGC 3 cut(s) 95, 116, 203
NdeII GATC 1 cut(s) 310
NlaIV GGNNCC 4 cut(s) 46, 109, 141, 142
PaeR7I CTCGAG 1 cut(s) 284
PciSI GCTCTTC 1 cut(s) 204
PfeI GAWTC 2 cut(s) 65, 274
PkrI GCNGC 1 cut(s) 91
Ppu21I YACGTR 1 cut(s) 224
PpuMI RGGWCCY 1 cut(s) 140
Psp124BI GAGCTC 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 140
PspN4I GGNNCC 4 cut(s) 46, 109, 141, 142
PspPI GGNCC 1 cut(s) 140
PspPPI RGGWCCY 1 cut(s) 140
PspXI VCTCGAGB 1 cut(s) 284
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SacI GAGCTC 1 cut(s) 24
SapI GCTCTTC 1 cut(s) 204
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 1 cut(s) 140
SduI GDGCHC 2 cut(s) 24, 155
SetI ASST 5 cut(s) 16, 24, 177, 226, 306
SfaNI GCATC 4 cut(s) 101, 128, 184, 215
Sfr274I CTCGAG 1 cut(s) 284
SinI GGWCC 1 cut(s) 140
SlaI CTCGAG 1 cut(s) 284
SmlI CTYRAG 2 cut(s) 23, 284
SmoI CTYRAG 2 cut(s) 23, 284
Sse9I AATT 1 cut(s) 332
SsiI CCGC 3 cut(s) 89, 98, 104
SstI GAGCTC 1 cut(s) 24
TaiI ACGT 2 cut(s) 177, 226
TaqI TCGA 2 cut(s) 192, 285
TasI AATT 1 cut(s) 332
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 2 cut(s) 65, 274
TspGWI ACGGA 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XhoI CTCGAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.