Rmu_sc0005599.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005599.1
OG0000480
Physical Location & Seq
Reverse (-)
52291 .. 53086
796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005599.1_g000013.1.cds

Sequence Viewer

Length: 678 bp
atggcaccccaaaacacgccctctagagtcatcctcagccttcgtgcccgattacccgaacttccctctgcaggtcgtggaaaacaaatttctgccatcgatgaacgcattcctgaccgtcgtgctttctccccgatcatgatcatgtctgatagctcatcgaatagatcgcgcagatgcgcaaaagagggtcactctaacgacgacttttgtcgctaccttgaggacatgctagattttcctgatgccgtggagatgaacactcgccgtacttcctggggagatgctggctccagcaggcctcggcatcgaagcatgagcatcgacagggctcggagtccagaatcgcaccgccttcgagctctccgagaagaatctttcgtcttgcaagattctttggaacataccatgtcagagatccgtaagctgaaggcggagattcgcgatttgtctgcagaggttcagcactccaaagatcacgctgaacacctcaaaattgagctacgcgaatgctacaggtgggagaggttcttagacgaagtcagggttcaaagtcgtgaagatggctaccgtgatgcggtgatcgaatatcgtcagcgcatgattatgaacttcccagagattaaccgatctcttttgccatattatgtgggacctgatggcactcctcgattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

26.35

Weight (kDa)

8.48

Isoelectric Point (pI)

70.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 181
Acc36I ACCTGC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 3 cut(s) 172, 444, 507
AciI CCGC 3 cut(s) 352, 434, 578
AclWI GGATC 1 cut(s) 412
AcsI RAATTY 1 cut(s) 87
AcuI CTGAAG 1 cut(s) 449
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 2 cut(s) 71, 577
AgsI TTSAA 1 cut(s) 551
AjnI CCWGG 1 cut(s) 275
AluBI AGCT 4 cut(s) 156, 362, 427, 502
AluI AGCT 4 cut(s) 156, 362, 427, 502
Alw21I GWGCWC 1 cut(s) 364
AlwI GGATC 1 cut(s) 412
AoxI GGCC 1 cut(s) 299
ApoI RAATTY 1 cut(s) 87
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 3 cut(s) 174, 182, 600
AspS9I GGNCC 1 cut(s) 653
AsuHPI GGTGA 1 cut(s) 592
AvaII GGWCC 1 cut(s) 653
BaeGI GKGCMC 1 cut(s) 49
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 334, 364
Bbv12I GWGCWC 1 cut(s) 364
BbvCI CCTCAGC 1 cut(s) 35
BccI CCATC 3 cut(s) 104, 557, 653
BceAI ACGGC 2 cut(s) 233, 252
BcgI CGANNNNNNTGC 6 cut(s) 304, 338, 338, 372, 434, 468
BciT130I CCWGG 1 cut(s) 277
BclI TGATCA 1 cut(s) 141
BfaI CTAG 2 cut(s) 24, 233
BfmI CTRYAG 3 cut(s) 69, 453, 514
BfuAI ACCTGC 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 277
Bme18I GGWCC 1 cut(s) 653
BmgT120I GGNCC 1 cut(s) 653
BmiI GGNNCC 3 cut(s) 6, 292, 654
BmrFI CCNGG 1 cut(s) 277
BmsI GCATC 6 cut(s) 167, 235, 274, 316, 330, 565
BoxI GACNNNNGTC 1 cut(s) 210
BplI GAGNNNNNCTC 4 cut(s) 18, 50, 179, 211
BpmI CTGGAG 1 cut(s) 277
Bpu10I CCTNAGC 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 242
Bsa29I ATCGAT 1 cut(s) 99
BsaBI GATNNNNATC 1 cut(s) 140
BsaJI CCNNGG 3 cut(s) 249, 276, 302
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 577
Bse8I GATNNNNATC 1 cut(s) 140
BseBI CCWGG 1 cut(s) 277
BseCI ATCGAT 1 cut(s) 99
BseDI CCNNGG 3 cut(s) 249, 276, 302
BseGI GGATG 1 cut(s) 30
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 2 cut(s) 71, 577
BseMII CTCAG 1 cut(s) 49
BseRI GAGGAG 1 cut(s) 657
BseSI GKGCMC 1 cut(s) 49
Bsh1236I CGCG 3 cut(s) 172, 444, 507
BshFI GGCC 1 cut(s) 301
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 364
BslFI GGGAC 1 cut(s) 666
BslI CCNNNNNNNGG 2 cut(s) 71, 577
BsmFI GGGAC 1 cut(s) 666
BsmI GAATGC 2 cut(s) 108, 515
BsnI GGCC 1 cut(s) 301
Bsp1286I GDGCHC 3 cut(s) 49, 334, 364
Bsp143I GATC 7 cut(s) 135, 141, 167, 417, 475, 582, 629
Bsp68I TCGCGA 1 cut(s) 444
BspACI CCGC 3 cut(s) 352, 434, 578
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 48
BspDI ATCGAT 1 cut(s) 99
BspFNI CGCG 3 cut(s) 172, 444, 507
BspHI TCATGA 1 cut(s) 138
BspLI GGNNCC 3 cut(s) 6, 292, 654
BspMAI CTGCAG 2 cut(s) 73, 457
BspMI ACCTGC 1 cut(s) 62
BspPI GGATC 1 cut(s) 412
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 3 cut(s) 249, 276, 302
BssMI GATC 7 cut(s) 135, 141, 167, 417, 475, 582, 629
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 2 cut(s) 119, 572
BstC8I GCNNGC 2 cut(s) 289, 299
BstDEI CTNAG 2 cut(s) 35, 532
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 30
BstFNI CGCG 3 cut(s) 172, 444, 507
BstHHI GCGC 3 cut(s) 174, 182, 600
BstKTI GATC 7 cut(s) 138, 144, 170, 420, 478, 585, 632
BstMBI GATC 7 cut(s) 135, 141, 167, 417, 475, 582, 629
BstNI CCWGG 1 cut(s) 277
BstNSI RCATGY 1 cut(s) 232
BstPAI GACNNNNGTC 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 275
BstSFI CTRYAG 3 cut(s) 69, 453, 514
BstSLI GKGCMC 1 cut(s) 49
BstUI CGCG 3 cut(s) 172, 444, 507
BstX2I RGATCY 1 cut(s) 417
BstYI RGATCY 1 cut(s) 417
Bsu15I ATCGAT 1 cut(s) 99
BsuRI GGCC 1 cut(s) 301
BsuTUI ATCGAT 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 1 cut(s) 30
BtuMI TCGCGA 1 cut(s) 444
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 2 cut(s) 289, 299
CciI TCATGA 1 cut(s) 138
CfoI GCGC 3 cut(s) 174, 182, 600
Cfr13I GGNCC 1 cut(s) 653
ClaI ATCGAT 1 cut(s) 99
Csp6I GTAC 1 cut(s) 270
CviAII CATG 6 cut(s) 139, 145, 229, 316, 409, 601
CviJI RGCY 9 cut(s) 39, 156, 291, 301, 332, 362, 427, 502, 567
CviKI_1 RGCY 9 cut(s) 39, 156, 291, 301, 332, 362, 427, 502, 567
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 2 cut(s) 35, 532
DpnI GATC 7 cut(s) 137, 143, 169, 419, 477, 584, 631
DpnII GATC 7 cut(s) 135, 141, 167, 417, 475, 582, 629
EciI GGCGGA 1 cut(s) 449
Ecl136II GAGCTC 1 cut(s) 362
Eco147I AGGCCT 1 cut(s) 301
Eco24I GRGCYC 2 cut(s) 334, 364
Eco47I GGWCC 1 cut(s) 653
Eco53kI GAGCTC 1 cut(s) 362
Eco57I CTGAAG 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 362
EcoO109I RGGNCCY 1 cut(s) 653
EcoRII CCWGG 1 cut(s) 275
EcoT38I GRGCYC 2 cut(s) 334, 364
FaeI CATG 6 cut(s) 142, 148, 232, 319, 412, 604
FaqI GGGAC 1 cut(s) 666
FatI CATG 6 cut(s) 138, 144, 228, 315, 408, 600
FbaI TGATCA 1 cut(s) 141
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 2 cut(s) 334, 364
FspBI CTAG 2 cut(s) 24, 233
FspI TGCGCA 1 cut(s) 181
GlaI GCGC 3 cut(s) 173, 181, 599
GsuI CTGGAG 1 cut(s) 277
HaeIII GGCC 1 cut(s) 301
HhaI GCGC 3 cut(s) 174, 182, 600
Hin1II CATG 6 cut(s) 142, 148, 232, 319, 412, 604
Hin6I GCGC 3 cut(s) 172, 180, 598
HinP1I GCGC 3 cut(s) 172, 180, 598
HinfI GANTC 6 cut(s) 27, 337, 344, 374, 392, 439
HphI GGTGA 1 cut(s) 592
Hpy188I TCNGA 4 cut(s) 151, 336, 368, 415
Hpy188III TCNNGA 7 cut(s) 24, 113, 139, 242, 341, 443, 557
Hpy99I CGWCG 2 cut(s) 123, 206
HpyAV CCTTC 3 cut(s) 50, 365, 424
HpyCH4III ACNGT 2 cut(s) 119, 572
HpyCH4V TGCA 3 cut(s) 71, 388, 455
HpyF3I CTNAG 2 cut(s) 35, 532
Hsp92II CATG 6 cut(s) 142, 148, 232, 319, 412, 604
HspAI GCGC 3 cut(s) 172, 180, 598
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 7 cut(s) 135, 141, 167, 417, 475, 582, 629
LmnI GCTCC 1 cut(s) 296
LweI GCATC 6 cut(s) 167, 235, 274, 316, 330, 565
MaeI CTAG 2 cut(s) 24, 233
MaeIII GTNAC 1 cut(s) 191
MalI GATC 7 cut(s) 137, 143, 169, 419, 477, 584, 631
MboI GATC 7 cut(s) 135, 141, 167, 417, 475, 582, 629
MboII GAAGA 2 cut(s) 383, 572
MflI RGATCY 1 cut(s) 417
MhlI GDGCHC 3 cut(s) 49, 334, 364
MluCI AATT 2 cut(s) 87, 495
MlyI GAGTC 2 cut(s) 36, 346
MroXI GAANNNNTTC 1 cut(s) 108
MseI TTAA 1 cut(s) 624
MslI CAYNNNNRTG 2 cut(s) 143, 605
MspR9I CCNGG 1 cut(s) 277
Mva1269I GAATGC 2 cut(s) 108, 515
MvaI CCWGG 1 cut(s) 277
MvnI CGCG 3 cut(s) 172, 444, 507
NdeII GATC 7 cut(s) 135, 141, 167, 417, 475, 582, 629
NlaIII CATG 6 cut(s) 142, 148, 232, 319, 412, 604
NlaIV GGNNCC 3 cut(s) 6, 292, 654
NmeAIII GCCGAG 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 191
NruI TCGCGA 1 cut(s) 444
NsbI TGCGCA 1 cut(s) 181
NspI RCATGY 1 cut(s) 232
PagI TCATGA 1 cut(s) 138
PceI AGGCCT 1 cut(s) 301
PcsI WCGNNNNNNNCGW 1 cut(s) 364
PctI GAATGC 2 cut(s) 108, 515
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 4 cut(s) 344, 374, 392, 439
PflFI GACNNNGTC 1 cut(s) 539
PleI GAGTC 2 cut(s) 35, 345
PpsI GAGTC 2 cut(s) 35, 345
PpuMI RGGWCCY 1 cut(s) 653
PshAI GACNNNNGTC 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 364
Psp5II RGGWCCY 1 cut(s) 653
Psp6I CCWGG 1 cut(s) 275
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 3 cut(s) 6, 292, 654
PspPI GGNCC 1 cut(s) 653
PspPPI RGGWCCY 1 cut(s) 653
PstI CTGCAG 2 cut(s) 73, 457
PsuI RGATCY 1 cut(s) 417
PsyI GACNNNGTC 1 cut(s) 539
RruI TCGCGA 1 cut(s) 444
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
RseI CAYNNNNRTG 2 cut(s) 143, 605
SacI GAGCTC 1 cut(s) 364
SaqAI TTAA 1 cut(s) 624
Sau3AI GATC 7 cut(s) 135, 141, 167, 417, 475, 582, 629
Sau96I GGNCC 1 cut(s) 653
SchI GAGTC 2 cut(s) 36, 346
ScrFI CCNGG 1 cut(s) 277
SduI GDGCHC 3 cut(s) 49, 334, 364
SfaNI GCATC 6 cut(s) 167, 235, 274, 316, 330, 565
SfcI CTRYAG 3 cut(s) 69, 453, 514
SinI GGWCC 1 cut(s) 653
SmiMI CAYNNNNRTG 2 cut(s) 143, 605
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 2 cut(s) 87, 495
SseBI AGGCCT 1 cut(s) 301
SsiI CCGC 3 cut(s) 352, 434, 578
SspMI CTAG 2 cut(s) 24, 233
SstI GAGCTC 1 cut(s) 364
StuI AGGCCT 1 cut(s) 301
StyD4I CCNGG 1 cut(s) 275
TaaI ACNGT 2 cut(s) 119, 572
TaqI TCGA 7 cut(s) 99, 161, 310, 324, 358, 585, 670
TasI AATT 2 cut(s) 87, 495
TfiI GAWTC 4 cut(s) 344, 374, 392, 439
Tru1I TTAA 1 cut(s) 624
Tru9I TTAA 1 cut(s) 624
TseFI GTSAC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 3 cut(s) 117, 272, 623
TspGWI ACGGA 1 cut(s) 410
Tth111I GACNNNGTC 1 cut(s) 539
VpaK11BI GGWCC 1 cut(s) 653
XapI RAATTY 1 cut(s) 87
XbaI TCTAGA 1 cut(s) 23
XceI RCATGY 1 cut(s) 232
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 2 cut(s) 24, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.