Rmu_sc0001524.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001524.1
OG0000480
Physical Location & Seq
Forward (+)
1 .. 1380
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001524.1_g000001.1.cds

Sequence Viewer

Length: 1013 bp
gttcatcccttggtgctctcatggcccgaagcaaaactaccgacttatcgaagaatcaaaggactaacgtagaatcaactactgaacatgtgccctgggaaccagaaaaccatgtcctggagatgtatgccgaggcgttttccgtgccgcctggagttaagatttcggcggtccctgaggatgtggacatctacaccggcagaaacatccccgatgatgccctgatattggcccccgagcagctgcggtacattcgatttcctattcaccctgttttccaacttatgtgggccgtgcttggattacacccgtttcaacttaccccaaattcctatcttctgttgtcggccttcctgattatgggttggaaatgggaagtctcactgggattatccgacttcctttatctctataactgctccagagttgttaaattccgatattttaacttcacccccttcccgaggatgaagactttcacggtagtttccaataattgtcatgggtggaaatctagggctctgatgattaccggcggttggcgctctctcgaattggacctcctccctccgaaggttttcgctgatgatcttgcttacaaaccttcccaagcgaagaccaaaattccaccgcaccgtatagagtggttggagcgtcacctcgttggacgtggatggtatccctcccagttcgtgactctcggaaatctccttggtatcacatccagccgcccctcgaccttgttcggtcgttatcaaaactgcgtaggtggtgcaacgtcaggaccagcccttgctttctccattacgaagattgaaagccacttttaccgatccggccttagtgagcctttgtttgcagtataccttgaggttaaggataccttcaaatcaattgttccttgctcggagatttcgatagcggaggaagatgaggatagcgtgaattcggaggattcgaggacgaccctgagggcgatgatattgatgagggaaggtcgctccttgtcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

38.03

Weight (kDa)

7.07

Isoelectric Point (pI)

44.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 117
AccI GTMKAC 1 cut(s) 863
AciI CCGC 7 cut(s) 148, 169, 246, 536, 631, 729, 922
AclWI GGATC 1 cut(s) 827
AcsI RAATTY 4 cut(s) 327, 433, 623, 945
AfaI GTAC 1 cut(s) 250
AfiI CCNNNNNNNGG 6 cut(s) 117, 228, 360, 464, 539, 573
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 3 cut(s) 316, 817, 888
AjiI CACGTC 1 cut(s) 670
AjnI CCWGG 3 cut(s) 94, 116, 150
AluBI AGCT 1 cut(s) 243
AluI AGCT 1 cut(s) 243
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 384
AlwI GGATC 1 cut(s) 827
Ama87I CYCGRG 2 cut(s) 235, 462
AoxI GGCC 5 cut(s) 23, 230, 290, 347, 837
ApeKI GCWGC 2 cut(s) 240, 243
ApoI RAATTY 4 cut(s) 327, 433, 623, 945
Asp700I GAANNNNTTC 2 cut(s) 475, 577
AspLEI GCGC 1 cut(s) 545
AspS9I GGNCC 6 cut(s) 24, 171, 231, 290, 558, 784
AsuHPI GGTGA 3 cut(s) 259, 444, 649
AvaI CYCGRG 2 cut(s) 235, 462
AvaII GGWCC 3 cut(s) 171, 558, 784
AxyI CCTNAGG 2 cut(s) 176, 970
BaeGI GKGCMC 1 cut(s) 95
BanII GRGCYC 1 cut(s) 522
BarI GAAGNNNNNNTAC 2 cut(s) 21, 53
BbsI GAAGAC 2 cut(s) 478, 622
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 230, 252
BccI CCATC 1 cut(s) 668
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 3 cut(s) 96, 118, 152
BciVI GTATCC 2 cut(s) 689, 873
BcoDI GTCTC 1 cut(s) 384
BfaI CTAG 1 cut(s) 515
BfoI RGCGCY 1 cut(s) 546
BfuI GTATCC 2 cut(s) 689, 873
BisI GCNGC 4 cut(s) 148, 241, 244, 729
BlsI GCNGC 4 cut(s) 149, 242, 245, 730
Bme1390I CCNGG 3 cut(s) 96, 118, 152
Bme18I GGWCC 3 cut(s) 171, 558, 784
BmeT110I CYCGRG 2 cut(s) 235, 462
BmgBI CACGTC 1 cut(s) 670
BmgT120I GGNCC 6 cut(s) 24, 171, 231, 290, 558, 784
BmiI GGNNCC 3 cut(s) 101, 173, 233
BmrFI CCNGG 3 cut(s) 96, 118, 152
BmrI ACTGGG 2 cut(s) 394, 681
BmsI GCATC 1 cut(s) 207
BmuI ACTGGG 2 cut(s) 394, 681
BpiI GAAGAC 2 cut(s) 478, 622
BpmI CTGGAG 3 cut(s) 139, 173, 405
BpuEI CTTGAG 1 cut(s) 889
BsaJI CCNNGG 6 cut(s) 9, 94, 95, 131, 463, 711
Bsc4I CCNNNNNNNGG 6 cut(s) 117, 228, 360, 464, 539, 573
Bse118I RCCGGY 2 cut(s) 196, 532
Bse1I ACTGG 2 cut(s) 389, 687
Bse21I CCTNAGG 2 cut(s) 176, 970
BseBI CCWGG 3 cut(s) 96, 118, 152
BseDI CCNNGG 6 cut(s) 9, 94, 95, 131, 463, 711
BseGI GGATG 6 cut(s) 4, 186, 206, 473, 679, 721
BseLI CCNNNNNNNGG 6 cut(s) 117, 228, 360, 464, 539, 573
BseMII CTCAG 2 cut(s) 167, 961
BseNI ACTGG 2 cut(s) 389, 687
BseRI GAGGAG 1 cut(s) 553
BseSI GKGCMC 1 cut(s) 95
BseXI GCAGC 2 cut(s) 230, 252
Bsh1285I CGRYCG 1 cut(s) 750
BshFI GGCC 5 cut(s) 25, 232, 292, 349, 839
BsiEI CGRYCG 1 cut(s) 750
BsiHKAI GWGCWC 1 cut(s) 18
BsiHKCI CYCGRG 2 cut(s) 235, 462
BsiSI CCGG 3 cut(s) 197, 533, 836
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 6 cut(s) 117, 228, 360, 464, 539, 573
BsmAI GTCTC 1 cut(s) 384
BsmFI GGGAC 1 cut(s) 157
BsnI GGCC 5 cut(s) 25, 232, 292, 349, 839
BsoBI CYCGRG 2 cut(s) 235, 462
Bsp1286I GDGCHC 3 cut(s) 18, 95, 522
Bsp143I GATC 2 cut(s) 588, 832
BspACI CCGC 7 cut(s) 148, 169, 246, 536, 631, 729, 922
BspANI GGCC 5 cut(s) 25, 232, 292, 349, 839
BspCNI CTCAG 2 cut(s) 168, 962
BspLI GGNNCC 3 cut(s) 101, 173, 233
BspPI GGATC 1 cut(s) 827
BsrFI RCCGGY 2 cut(s) 196, 532
BsrI ACTGG 2 cut(s) 389, 687
BssAI RCCGGY 2 cut(s) 196, 532
BssECI CCNNGG 6 cut(s) 9, 94, 95, 131, 463, 711
BssMI GATC 2 cut(s) 588, 832
BssNAI GTATAC 1 cut(s) 864
BssT1I CCWWGG 2 cut(s) 9, 711
Bst1107I GTATAC 1 cut(s) 864
Bst2UI CCWGG 3 cut(s) 96, 118, 152
Bst4CI ACNGT 2 cut(s) 483, 637
BstDEI CTNAG 3 cut(s) 176, 841, 970
BstENI CCTNNNNNAGG 1 cut(s) 462
BstF5I GGATG 6 cut(s) 4, 186, 206, 473, 679, 721
BstH2I RGCGCY 1 cut(s) 546
BstHHI GCGC 1 cut(s) 545
BstKTI GATC 2 cut(s) 591, 835
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 2 cut(s) 588, 832
BstMCI CGRYCG 1 cut(s) 750
BstMWI GCNNNNNNNGC 2 cut(s) 22, 542
BstNI CCWGG 3 cut(s) 96, 118, 152
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 3 cut(s) 94, 116, 150
BstSLI GKGCMC 1 cut(s) 95
BstV1I GCAGC 2 cut(s) 230, 252
BstV2I GAAGAC 2 cut(s) 478, 622
BstZ17I GTATAC 1 cut(s) 864
Bsu36I CCTNAGG 2 cut(s) 176, 970
BsuI GTATCC 2 cut(s) 689, 873
BsuRI GGCC 5 cut(s) 25, 232, 292, 349, 839
BtgZI GCGATG 1 cut(s) 991
BtrI CACGTC 1 cut(s) 670
BtsCI GGATG 6 cut(s) 4, 186, 206, 473, 679, 721
BtsIMutI CAGTG 1 cut(s) 382
CfoI GCGC 1 cut(s) 545
Cfr10I RCCGGY 2 cut(s) 196, 532
Cfr13I GGNCC 6 cut(s) 24, 171, 231, 290, 558, 784
CseI GACGC 1 cut(s) 643
Csp6I GTAC 1 cut(s) 249
CspCI CAANNNNNGTGG 2 cut(s) 268, 303
CviAII CATG 4 cut(s) 21, 88, 112, 502
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 3 cut(s) 176, 841, 970
DpnI GATC 2 cut(s) 590, 834
DpnII GATC 2 cut(s) 588, 832
Eco130I CCWWGG 2 cut(s) 9, 711
Eco24I GRGCYC 1 cut(s) 522
Eco47I GGWCC 3 cut(s) 171, 558, 784
Eco81I CCTNAGG 2 cut(s) 176, 970
Eco88I CYCGRG 2 cut(s) 235, 462
EcoNI CCTNNNNNAGG 1 cut(s) 462
EcoRI GAATTC 1 cut(s) 945
EcoRII CCWGG 3 cut(s) 94, 116, 150
EcoT14I CCWWGG 2 cut(s) 9, 711
EcoT38I GRGCYC 1 cut(s) 522
ErhI CCWWGG 2 cut(s) 9, 711
FaeI CATG 4 cut(s) 24, 91, 115, 505
FalI AAGNNNNNCTT 2 cut(s) 868, 900
FaqI GGGAC 1 cut(s) 157
FatI CATG 4 cut(s) 20, 87, 111, 501
FblI GTMKAC 1 cut(s) 863
Fnu4HI GCNGC 4 cut(s) 148, 241, 244, 729
FokI GGATG 5 cut(s) 193, 193, 480, 686, 708
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 4 cut(s) 148, 241, 244, 729
FspBI CTAG 1 cut(s) 515
GlaI GCGC 1 cut(s) 544
GluI GCNGC 4 cut(s) 148, 241, 244, 729
GsuI CTGGAG 3 cut(s) 139, 173, 405
HaeII RGCGCY 1 cut(s) 546
HaeIII GGCC 5 cut(s) 25, 232, 292, 349, 839
HapII CCGG 3 cut(s) 197, 533, 836
HgaI GACGC 1 cut(s) 643
HhaI GCGC 1 cut(s) 545
Hin1II CATG 4 cut(s) 24, 91, 115, 505
Hin6I GCGC 1 cut(s) 543
HinP1I GCGC 1 cut(s) 543
HinfI GANTC 4 cut(s) 54, 73, 696, 955
HpaII CCGG 3 cut(s) 197, 533, 836
HphI GGTGA 3 cut(s) 259, 444, 649
Hpy166II GTNNAC 2 cut(s) 186, 864
Hpy188I TCNGA 7 cut(s) 396, 439, 524, 572, 703, 909, 951
Hpy188III TCNNGA 7 cut(s) 354, 422, 462, 550, 693, 782, 1010
Hpy8I GTNNAC 2 cut(s) 186, 864
HpyAV CCTTC 6 cut(s) 360, 468, 567, 614, 894, 988
HpyCH4III ACNGT 2 cut(s) 483, 637
HpyCH4IV ACGT 3 cut(s) 68, 669, 778
HpyCH4V TGCA 2 cut(s) 775, 859
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 542
HpyF3I CTNAG 3 cut(s) 176, 841, 970
HpySE526I ACGT 3 cut(s) 68, 669, 778
Hsp92II CATG 4 cut(s) 24, 91, 115, 505
HspAI GCGC 1 cut(s) 543
Kzo9I GATC 2 cut(s) 588, 832
LmnI GCTCC 3 cut(s) 424, 651, 1006
Lsp1109I GCAGC 2 cut(s) 230, 252
LweI GCATC 1 cut(s) 207
MaeI CTAG 1 cut(s) 515
MaeII ACGT 3 cut(s) 68, 669, 778
MaeIII GTNAC 2 cut(s) 655, 693
MalI GATC 2 cut(s) 590, 834
MboI GATC 2 cut(s) 588, 832
MboII GAAGA 6 cut(s) 63, 328, 483, 627, 822, 940
MfeI CAATTG 1 cut(s) 893
MhlI GDGCHC 3 cut(s) 18, 95, 522
MluCI AATT 7 cut(s) 327, 433, 495, 553, 623, 893, 945
MlyI GAGTC 1 cut(s) 690
MmeI TCCRAC 5 cut(s) 303, 346, 419, 629, 645
MroXI GAANNNNTTC 2 cut(s) 475, 577
MseI TTAA 4 cut(s) 158, 431, 446, 875
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 3 cut(s) 197, 533, 836
MspR9I CCNGG 3 cut(s) 96, 118, 152
MunI CAATTG 1 cut(s) 893
MvaI CCWGG 3 cut(s) 96, 118, 152
MwoI GCNNNNNNNGC 2 cut(s) 22, 542
NdeII GATC 2 cut(s) 588, 832
NlaIII CATG 4 cut(s) 24, 91, 115, 505
NlaIV GGNNCC 3 cut(s) 101, 173, 233
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 2 cut(s) 655, 693
NspI RCATGY 1 cut(s) 91
PasI CCCWGGG 1 cut(s) 95
PciI ACATGT 1 cut(s) 87
PcsI WCGNNNNNNNCGW 2 cut(s) 913, 955
PdmI GAANNNNTTC 2 cut(s) 475, 577
PfeI GAWTC 3 cut(s) 54, 73, 955
PflMI CCANNNNNTGG 1 cut(s) 117
PfoI TCCNGGA 1 cut(s) 116
PkrI GCNGC 4 cut(s) 149, 242, 245, 730
PleI GAGTC 1 cut(s) 690
PpsI GAGTC 1 cut(s) 690
PscI ACATGT 1 cut(s) 87
Psp6I CCWGG 3 cut(s) 94, 116, 150
PspGI CCWGG 3 cut(s) 94, 116, 150
PspN4I GGNNCC 3 cut(s) 101, 173, 233
PspPI GGNCC 6 cut(s) 24, 171, 231, 290, 558, 784
PvuII CAGCTG 1 cut(s) 243
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
SaqAI TTAA 4 cut(s) 158, 431, 446, 875
SatI GCNGC 4 cut(s) 148, 241, 244, 729
Sau3AI GATC 2 cut(s) 588, 832
Sau96I GGNCC 6 cut(s) 24, 171, 231, 290, 558, 784
SchI GAGTC 1 cut(s) 690
ScrFI CCNGG 3 cut(s) 96, 118, 152
SduI GDGCHC 3 cut(s) 18, 95, 522
SfaNI GCATC 1 cut(s) 207
SinI GGWCC 3 cut(s) 171, 558, 784
SmlI CTYRAG 1 cut(s) 868
SmoI CTYRAG 1 cut(s) 868
Sse9I AATT 7 cut(s) 327, 433, 495, 553, 623, 893, 945
SsiI CCGC 7 cut(s) 148, 169, 246, 536, 631, 729, 922
SspMI CTAG 1 cut(s) 515
StyD4I CCNGG 3 cut(s) 94, 116, 150
StyI CCWWGG 2 cut(s) 9, 711
TaaI ACNGT 2 cut(s) 483, 637
TaiI ACGT 3 cut(s) 71, 672, 781
TaqI TCGA 6 cut(s) 49, 255, 551, 736, 916, 958
TaqII GACCGA 1 cut(s) 736
TasI AATT 7 cut(s) 327, 433, 495, 553, 623, 893, 945
TauI GCSGC 2 cut(s) 150, 731
TfiI GAWTC 3 cut(s) 54, 73, 955
Tru1I TTAA 4 cut(s) 158, 431, 446, 875
Tru9I TTAA 4 cut(s) 158, 431, 446, 875
TscAI CASTG 1 cut(s) 389
TseFI GTSAC 2 cut(s) 655, 693
TseI GCWGC 2 cut(s) 240, 243
Tsp45I GTSAC 2 cut(s) 655, 693
TspDTI ATGAA 1 cut(s) 484
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 1 cut(s) 389
Van91I CCANNNNNTGG 1 cut(s) 117
VpaK11BI GGWCC 3 cut(s) 171, 558, 784
XagI CCTNNNNNAGG 1 cut(s) 462
XapI RAATTY 4 cut(s) 327, 433, 623, 945
XceI RCATGY 1 cut(s) 91
XmiI GTMKAC 1 cut(s) 863
XmnI GAANNNNTTC 2 cut(s) 475, 577
XspI CTAG 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.