Rmu_sc0011938.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011938.1
OG0000480
Physical Location & Seq
Reverse (-)
3156 .. 3932
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011938.1_g000002.1.cds

Sequence Viewer

Length: 690 bp
atgatgcctcctcctctacccaaagttctagaattaagtttcaggaaacgcgacaactcctatgttctggcaggagaatccatgttcgccaatggtccggccgcatcagcggtagctagtgcctttgcatcactgaggcccaattcagagctgcctcctaagagtcctacggaactttacaatgacatgtgcgcttttcagctggatgtcctcatggcatcccaccacttcctacgcagcctcgacgccttccaattgaagcaacaacaacagttggacgaggcgagtctccaactcaaatcccaggaagaggagcttaacgaacagatgaaaacaatggcagaccaaagtcacctcctcgaggacaaagatcgtcagatagcgacattgaaagctgacttggacttagtaactcagagcaaggagaaggagttcgagagaggggttactcagatgaagcgcgtatcagccaaaaattttcggctggggtggaatcaagccctgaccagagaggagggcaggtgctacgttggccccgatgaatttgaccattactacggattttcccccatgtgctactctcccattcgaggcatgcttcctggagacgttccttcacctgcatccagtgcttcggagggctatggccatggggatgaagaagtgtcctccacccctcgctccaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

25.64

Weight (kDa)

5.21

Isoelectric Point (pI)

55.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 510, 628
AbsI CCTCGAGG 1 cut(s) 359
Acc36I ACCTGC 2 cut(s) 510, 628
AccII CGCG 2 cut(s) 51, 462
AciI CCGC 2 cut(s) 102, 110
AcoI YGGCCR 2 cut(s) 99, 646
AcsI RAATTY 2 cut(s) 475, 542
AcyI GRCGYC 1 cut(s) 246
AfiI CCNNNNNNNGG 3 cut(s) 310, 361, 590
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 2 cut(s) 259, 391
AjnI CCWGG 2 cut(s) 303, 601
AjuI GAANNNNNNNTTGG 2 cut(s) 383, 415
AloI GAACNNNNNNTCC 2 cut(s) 416, 448
AluBI AGCT 5 cut(s) 116, 151, 202, 316, 395
AluI AGCT 5 cut(s) 116, 151, 202, 316, 395
Alw26I GTCTC 2 cut(s) 293, 600
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 4 cut(s) 99, 137, 532, 646
ApeKI GCWGC 2 cut(s) 151, 237
ApoI RAATTY 2 cut(s) 475, 542
Asp700I GAANNNNTTC 1 cut(s) 431
AspLEI GCGC 2 cut(s) 194, 462
AspS9I GGNCC 3 cut(s) 95, 138, 533
AsuHPI GGTGA 2 cut(s) 344, 609
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 1 cut(s) 95
BalI TGGCCA 1 cut(s) 648
BbvI GCAGC 2 cut(s) 138, 249
BciT130I CCWGG 2 cut(s) 305, 603
BcoDI GTCTC 2 cut(s) 293, 600
BfaI CTAG 2 cut(s) 29, 117
BfuAI ACCTGC 2 cut(s) 510, 628
BisI GCNGC 3 cut(s) 102, 152, 238
BlsI GCNGC 3 cut(s) 103, 153, 239
Bme1390I CCNGG 2 cut(s) 305, 603
Bme18I GGWCC 1 cut(s) 95
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 3 cut(s) 95, 138, 533
BmiI GGNNCC 1 cut(s) 535
BmrFI CCNGG 2 cut(s) 305, 603
BmsI GCATC 4 cut(s) 113, 137, 227, 632
BoxI GACNNNNGTC 1 cut(s) 348
BpmI CTGGAG 1 cut(s) 624
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 303, 649
BsaXI ACNNNNNCTCC 4 cut(s) 416, 446, 506, 536
Bsc4I CCNNNNNNNGG 3 cut(s) 310, 361, 590
Bse1I ACTGG 1 cut(s) 627
BseBI CCWGG 2 cut(s) 305, 603
BseDI CCNNGG 2 cut(s) 303, 649
BseGI GGATG 4 cut(s) 211, 218, 623, 661
BseLI CCNNNNNNNGG 3 cut(s) 310, 361, 590
BseMII CTCAG 3 cut(s) 125, 428, 464
BseNI ACTGG 1 cut(s) 627
BseRI GAGGAG 3 cut(s) 326, 347, 527
BseX3I CGGCCG 1 cut(s) 99
BseXI GCAGC 2 cut(s) 138, 249
BseYI CCCAGC 1 cut(s) 484
Bsh1236I CGCG 2 cut(s) 51, 462
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 4 cut(s) 101, 139, 534, 648
BsiEI CGRYCG 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 1 cut(s) 98
BslI CCNNNNNNNGG 3 cut(s) 310, 361, 590
BsmAI GTCTC 2 cut(s) 293, 600
BsmBI CGTCTC 1 cut(s) 600
BsnI GGCC 4 cut(s) 101, 139, 534, 648
BsoBI CYCGRG 1 cut(s) 359
Bsp143I GATC 1 cut(s) 370
Bsp19I CCATGG 1 cut(s) 649
BspACI CCGC 2 cut(s) 102, 110
BspANI GGCC 4 cut(s) 101, 139, 534, 648
BspCNI CTCAG 3 cut(s) 126, 427, 463
BspFNI CGCG 2 cut(s) 51, 462
BspLI GGNNCC 1 cut(s) 535
BspMI ACCTGC 2 cut(s) 510, 628
BsrI ACTGG 1 cut(s) 627
BssECI CCNNGG 2 cut(s) 303, 649
BssMI GATC 1 cut(s) 370
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 649
Bst2UI CCWGG 2 cut(s) 305, 603
Bst4CI ACNGT 1 cut(s) 273
Bst6I CTCTTC 1 cut(s) 303
BstACI GRCGYC 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 629
BstC8I GCNNGC 1 cut(s) 596
BstDEI CTNAG 5 cut(s) 134, 159, 406, 414, 450
BstDSI CCRYGG 1 cut(s) 649
BstENI CCTNNNNNAGG 1 cut(s) 359
BstF5I GGATG 4 cut(s) 211, 218, 623, 661
BstFNI CGCG 2 cut(s) 51, 462
BstHHI GCGC 2 cut(s) 194, 462
BstKTI GATC 1 cut(s) 373
BstMAI GTCTC 2 cut(s) 293, 600
BstMBI GATC 1 cut(s) 370
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 3 cut(s) 107, 531, 629
BstNI CCWGG 2 cut(s) 305, 603
BstNSI RCATGY 2 cut(s) 190, 598
BstPAI GACNNNNGTC 1 cut(s) 348
BstSCI CCNGG 2 cut(s) 303, 601
BstUI CGCG 2 cut(s) 51, 462
BstV1I GCAGC 2 cut(s) 138, 249
BstZI CGGCCG 1 cut(s) 99
BsuRI GGCC 4 cut(s) 101, 139, 534, 648
BtgI CCRYGG 1 cut(s) 649
BtsCI GGATG 4 cut(s) 211, 218, 623, 661
BtsIMutI CAGTG 2 cut(s) 131, 634
BveI ACCTGC 2 cut(s) 510, 628
Cac8I GCNNGC 1 cut(s) 596
CfoI GCGC 2 cut(s) 194, 462
Cfr13I GGNCC 3 cut(s) 95, 138, 533
CseI GACGC 1 cut(s) 254
CviAII CATG 6 cut(s) 82, 187, 214, 571, 595, 650
DdeI CTNAG 5 cut(s) 134, 159, 406, 414, 450
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
EaeI YGGCCR 2 cut(s) 99, 646
EagI CGGCCG 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
EclXI CGGCCG 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 649
Eco47I GGWCC 1 cut(s) 95
Eco52I CGGCCG 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 359
EcoNI CCTNNNNNAGG 1 cut(s) 359
EcoRII CCWGG 2 cut(s) 303, 601
EcoT14I CCWWGG 1 cut(s) 649
ErhI CCWWGG 1 cut(s) 649
Esp3I CGTCTC 1 cut(s) 600
FaeI CATG 6 cut(s) 85, 190, 217, 574, 598, 653
FaiI YATR 8 cut(s) 63, 83, 188, 215, 572, 596, 645, 651
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FatI CATG 6 cut(s) 81, 186, 213, 570, 594, 649
Fnu4HI GCNGC 3 cut(s) 102, 152, 238
FokI GGATG 4 cut(s) 205, 218, 610, 668
Fsp4HI GCNGC 3 cut(s) 102, 152, 238
FspBI CTAG 2 cut(s) 29, 117
GlaI GCGC 2 cut(s) 193, 461
GluI GCNGC 3 cut(s) 102, 152, 238
GsaI CCCAGC 1 cut(s) 488
GsuI CTGGAG 1 cut(s) 624
HaeIII GGCC 4 cut(s) 101, 139, 534, 648
HapII CCGG 1 cut(s) 98
HgaI GACGC 1 cut(s) 254
HhaI GCGC 2 cut(s) 194, 462
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 6 cut(s) 85, 190, 217, 574, 598, 653
Hin6I GCGC 2 cut(s) 192, 460
HinP1I GCGC 2 cut(s) 192, 460
HinfI GANTC 4 cut(s) 77, 163, 286, 493
HpaII CCGG 1 cut(s) 98
HphI GGTGA 2 cut(s) 344, 609
Hpy188I TCNGA 5 cut(s) 148, 378, 417, 453, 637
Hpy188III TCNNGA 3 cut(s) 29, 43, 436
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 3 cut(s) 259, 421, 624
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4IV ACGT 2 cut(s) 528, 609
HpyCH4V TGCA 2 cut(s) 128, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 531, 629
HpyF3I CTNAG 5 cut(s) 134, 159, 406, 414, 450
HpySE526I ACGT 2 cut(s) 528, 609
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 6 cut(s) 85, 190, 217, 574, 598, 653
HspAI GCGC 2 cut(s) 192, 460
Kzo9I GATC 1 cut(s) 370
LmnI GCTCC 2 cut(s) 313, 686
Lsp1109I GCAGC 2 cut(s) 138, 249
LweI GCATC 4 cut(s) 113, 137, 227, 632
MaeI CTAG 2 cut(s) 29, 117
MaeII ACGT 2 cut(s) 528, 609
MaeIII GTNAC 3 cut(s) 350, 409, 445
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 2 cut(s) 320, 671
MfeI CAATTG 1 cut(s) 254
MlsI TGGCCA 1 cut(s) 648
MluCI AATT 5 cut(s) 32, 142, 254, 475, 542
MluNI TGGCCA 1 cut(s) 648
MlyI GAGTC 2 cut(s) 172, 295
MmeI TCCRAC 2 cut(s) 255, 316
Mox20I TGGCCA 1 cut(s) 648
MroXI GAANNNNTTC 1 cut(s) 431
MscI TGGCCA 1 cut(s) 648
MseI TTAA 2 cut(s) 35, 318
MslI CAYNNNNRTG 1 cut(s) 654
Msp20I TGGCCA 1 cut(s) 648
MspA1I CMGCKG 2 cut(s) 110, 202
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 2 cut(s) 305, 603
MunI CAATTG 1 cut(s) 254
MvaI CCWGG 2 cut(s) 305, 603
MvnI CGCG 2 cut(s) 51, 462
MwoI GCNNNNNNNGC 3 cut(s) 107, 531, 629
NcoI CCATGG 1 cut(s) 649
NdeII GATC 1 cut(s) 370
NlaIII CATG 6 cut(s) 85, 190, 217, 574, 598, 653
NlaIV GGNNCC 1 cut(s) 535
NmuCI GTSAC 1 cut(s) 350
NspI RCATGY 2 cut(s) 190, 598
PaeI GCATGC 1 cut(s) 598
PaeR7I CTCGAG 1 cut(s) 359
PaqCI CACCTGC 2 cut(s) 510, 628
PciI ACATGT 1 cut(s) 186
PcsI WCGNNNNNNNCGW 1 cut(s) 534
PdmI GAANNNNTTC 1 cut(s) 431
PfeI GAWTC 2 cut(s) 77, 493
PfoI TCCNGGA 1 cut(s) 601
PkrI GCNGC 3 cut(s) 103, 153, 239
PleI GAGTC 2 cut(s) 171, 294
PpsI GAGTC 2 cut(s) 171, 294
PscI ACATGT 1 cut(s) 186
PshAI GACNNNNGTC 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 303, 601
PspFI CCCAGC 1 cut(s) 484
PspGI CCWGG 2 cut(s) 303, 601
PspN4I GGNNCC 1 cut(s) 535
PspPI GGNCC 3 cut(s) 95, 138, 533
PspXI VCTCGAGB 1 cut(s) 359
PvuII CAGCTG 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 654
SaqAI TTAA 2 cut(s) 35, 318
SatI GCNGC 3 cut(s) 102, 152, 238
Sau3AI GATC 1 cut(s) 370
Sau96I GGNCC 3 cut(s) 95, 138, 533
SchI GAGTC 2 cut(s) 172, 295
ScrFI CCNGG 2 cut(s) 305, 603
SfaNI GCATC 4 cut(s) 113, 137, 227, 632
Sfr274I CTCGAG 1 cut(s) 359
SinI GGWCC 1 cut(s) 95
SlaI CTCGAG 1 cut(s) 359
SmiMI CAYNNNNRTG 1 cut(s) 654
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SphI GCATGC 1 cut(s) 598
Sse9I AATT 5 cut(s) 32, 142, 254, 475, 542
SsiI CCGC 2 cut(s) 102, 110
SspMI CTAG 2 cut(s) 29, 117
StyD4I CCNGG 2 cut(s) 303, 601
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 1 cut(s) 273
TaiI ACGT 2 cut(s) 531, 612
TaqI TCGA 4 cut(s) 243, 360, 435, 589
TasI AATT 5 cut(s) 32, 142, 254, 475, 542
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 2 cut(s) 77, 493
Tru1I TTAA 2 cut(s) 35, 318
Tru9I TTAA 2 cut(s) 35, 318
TscAI CASTG 2 cut(s) 138, 634
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 2 cut(s) 151, 237
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 4 cut(s) 344, 470, 555, 672
TspGWI ACGGA 2 cut(s) 185, 573
TspRI CASTG 2 cut(s) 138, 634
VpaK11BI GGWCC 1 cut(s) 95
XagI CCTNNNNNAGG 1 cut(s) 359
XapI RAATTY 2 cut(s) 475, 542
XbaI TCTAGA 1 cut(s) 28
XceI RCATGY 2 cut(s) 190, 598
XhoI CTCGAG 1 cut(s) 359
XmnI GAANNNNTTC 1 cut(s) 431
XspI CTAG 2 cut(s) 29, 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.