Rmu_co8335039.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8335039.1
OG0000480
Physical Location & Seq
Forward (+)
1 .. 532
532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8335039.1_g000001.1.cds

Sequence Viewer

Length: 446 bp
caagcaccgaacttggtgcccagagggccccttcacctccgtcgggtccgacctcttccatgcaaccgcctcctcccactgctctggaattgagatttaagaagcgtgataactctttcgtcacggccgtagagtccttagactccaacggtttggcggcgtcagctattgccggtgccttggcgacatcaaatccaagatcgggtaggcctcccaagagcgctatggagttctatgatgacctatgttcctctcagctcgatgccctcatggcgtctcatcgttttttgcgcagtcttgatgctcttcattccaggcagcaacaacgccttgagaaagccgaccaagagctaaaatccaaggagaaggaactaaacgaccaaatggagtcaatgacgcaactgagccgatggccacaaaacgaggatggcgggagctgcccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.02

Weight (kDa)

5.7

Isoelectric Point (pI)

62.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 292
AccB1I GGYRCC 2 cut(s) 16, 175
AciI CCGC 3 cut(s) 67, 157, 431
AcoI YGGCCR 2 cut(s) 125, 412
AcyI GRCGYC 2 cut(s) 160, 274
AfeI AGCGCT 1 cut(s) 222
AfiI CCNNNNNNNGG 2 cut(s) 43, 202
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 4 cut(s) 166, 258, 351, 437
AluI AGCT 4 cut(s) 166, 258, 351, 437
Alw26I GTCTC 1 cut(s) 281
Aor51HI AGCGCT 1 cut(s) 222
AoxI GGCC 4 cut(s) 26, 125, 208, 412
ApaI GGGCCC 1 cut(s) 30
ApeKI GCWGC 2 cut(s) 318, 437
AspLEI GCGC 2 cut(s) 223, 293
AspS9I GGNCC 3 cut(s) 26, 27, 46
AsuHPI GGTGA 1 cut(s) 26
AvaII GGWCC 1 cut(s) 46
BaeGI GKGCMC 2 cut(s) 21, 30
BalI TGGCCA 1 cut(s) 414
BanI GGYRCC 2 cut(s) 16, 175
BanII GRGCYC 1 cut(s) 30
BbvI GCAGC 2 cut(s) 330, 424
BccI CCATC 2 cut(s) 404, 421
BceAI ACGGC 2 cut(s) 112, 140
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 281
BfoI RGCGCY 1 cut(s) 224
BglI GCCNNNNNGGC 2 cut(s) 25, 271
BisI GCNGC 3 cut(s) 158, 319, 438
BlsI GCNGC 3 cut(s) 159, 320, 439
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 3 cut(s) 26, 27, 46
BmiI GGNNCC 5 cut(s) 18, 28, 29, 47, 177
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 2 cut(s) 252, 291
BpuEI CTTGAG 1 cut(s) 352
BsaHI GRCGYC 2 cut(s) 160, 274
BsaJI CCNNGG 2 cut(s) 179, 359
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 202
Bse118I RCCGGY 1 cut(s) 172
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 179, 359
BseGI GGATG 1 cut(s) 432
BseLI CCNNNNNNNGG 2 cut(s) 43, 202
BseMII CTCAG 2 cut(s) 268, 394
BseRI GAGGAG 1 cut(s) 62
BseSI GKGCMC 2 cut(s) 21, 30
BseX3I CGGCCG 1 cut(s) 125
BseXI GCAGC 2 cut(s) 330, 424
Bsh1285I CGRYCG 1 cut(s) 128
BshFI GGCC 4 cut(s) 28, 127, 210, 414
BshNI GGYRCC 2 cut(s) 16, 175
BsiEI CGRYCG 1 cut(s) 128
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 2 cut(s) 43, 202
BsmAI GTCTC 1 cut(s) 281
BsmBI CGTCTC 1 cut(s) 281
BsnI GGCC 4 cut(s) 28, 127, 210, 414
Bsp120I GGGCCC 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 21, 30
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 3 cut(s) 67, 157, 431
BspANI GGCC 4 cut(s) 28, 127, 210, 414
BspCNI CTCAG 2 cut(s) 267, 395
BspLI GGNNCC 5 cut(s) 18, 28, 29, 47, 177
BspQI GCTCTTC 1 cut(s) 311
BspT107I GGYRCC 2 cut(s) 16, 175
BsrFI RCCGGY 1 cut(s) 172
BssAI RCCGGY 1 cut(s) 172
BssECI CCNNGG 2 cut(s) 179, 359
BssMI GATC 1 cut(s) 199
BssNI GRCGYC 2 cut(s) 160, 274
BssT1I CCWWGG 2 cut(s) 179, 359
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 2 cut(s) 60, 311
BstACI GRCGYC 2 cut(s) 160, 274
BstDEI CTNAG 3 cut(s) 138, 254, 403
BstF5I GGATG 1 cut(s) 432
BstH2I RGCGCY 1 cut(s) 224
BstHHI GCGC 2 cut(s) 223, 293
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 1 cut(s) 199
BstMCI CGRYCG 1 cut(s) 128
BstMWI GCNNNNNNNGC 4 cut(s) 25, 163, 271, 437
BstNI CCWGG 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 313
BstSLI GKGCMC 2 cut(s) 21, 30
BstV1I GCAGC 2 cut(s) 330, 424
BstXI CCANNNNNNTGG 2 cut(s) 84, 153
BstZI CGGCCG 1 cut(s) 125
BsuRI GGCC 4 cut(s) 28, 127, 210, 414
BtsCI GGATG 1 cut(s) 432
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 77
CfoI GCGC 2 cut(s) 223, 293
Cfr10I RCCGGY 1 cut(s) 172
Cfr13I GGNCC 3 cut(s) 26, 27, 46
CseI GACGC 3 cut(s) 149, 263, 405
CviAII CATG 2 cut(s) 60, 270
DdeI CTNAG 3 cut(s) 138, 254, 403
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
EaeI YGGCCR 2 cut(s) 125, 412
EagI CGGCCG 1 cut(s) 125
Eam1104I CTCTTC 2 cut(s) 60, 311
EarI CTCTTC 2 cut(s) 60, 311
EclXI CGGCCG 1 cut(s) 125
Eco130I CCWWGG 2 cut(s) 179, 359
Eco147I AGGCCT 1 cut(s) 210
Eco24I GRGCYC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 46
Eco47III AGCGCT 1 cut(s) 222
Eco52I CGGCCG 1 cut(s) 125
EcoO109I RGGNCCY 2 cut(s) 26, 27
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 2 cut(s) 179, 359
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 2 cut(s) 179, 359
Esp3I CGTCTC 1 cut(s) 281
FaeI CATG 2 cut(s) 63, 273
FaiI YATR 5 cut(s) 61, 226, 236, 246, 271
FatI CATG 2 cut(s) 59, 269
FauI CCCGC 1 cut(s) 424
Fnu4HI GCNGC 3 cut(s) 158, 319, 438
FokI GGATG 1 cut(s) 439
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 3 cut(s) 158, 319, 438
FspI TGCGCA 1 cut(s) 292
GlaI GCGC 2 cut(s) 222, 292
GluI GCNGC 3 cut(s) 158, 319, 438
HaeII RGCGCY 1 cut(s) 224
HaeIII GGCC 4 cut(s) 28, 127, 210, 414
HapII CCGG 1 cut(s) 173
HgaI GACGC 3 cut(s) 149, 263, 405
HhaI GCGC 2 cut(s) 223, 293
Hin1I GRCGYC 2 cut(s) 160, 274
Hin1II CATG 2 cut(s) 63, 273
Hin6I GCGC 2 cut(s) 221, 291
HinP1I GCGC 2 cut(s) 221, 291
HinfI GANTC 3 cut(s) 133, 142, 388
HpaII CCGG 1 cut(s) 173
HphI GGTGA 1 cut(s) 26
Hpy188I TCNGA 1 cut(s) 50
Hpy188III TCNNGA 2 cut(s) 85, 298
Hpy99I CGWCG 1 cut(s) 45
HpyAV CCTTC 2 cut(s) 41, 360
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 163, 271, 437
HpyF3I CTNAG 3 cut(s) 138, 254, 403
Hsp92I GRCGYC 2 cut(s) 160, 274
Hsp92II CATG 2 cut(s) 63, 273
HspAI GCGC 2 cut(s) 221, 291
Kzo9I GATC 1 cut(s) 199
LguI GCTCTTC 1 cut(s) 311
LmnI GCTCC 1 cut(s) 434
LpnPI CCDG 5 cut(s) 34, 70, 186, 300, 327
Lsp1109I GCAGC 2 cut(s) 330, 424
LweI GCATC 2 cut(s) 252, 291
MaeIII GTNAC 1 cut(s) 120
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 2 cut(s) 47, 298
MhlI GDGCHC 2 cut(s) 21, 30
MlsI TGGCCA 1 cut(s) 414
MluCI AATT 1 cut(s) 88
MluNI TGGCCA 1 cut(s) 414
MlyI GAGTC 3 cut(s) 136, 142, 397
MmeI TCCRAC 2 cut(s) 73, 170
MnlI CCTC 9 cut(s) 17, 47, 63, 80, 83, 221, 261, 277, 417
Mox20I TGGCCA 1 cut(s) 414
MscI TGGCCA 1 cut(s) 414
MseI TTAA 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 414
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 4 cut(s) 25, 163, 271, 437
NdeII GATC 1 cut(s) 199
NlaIII CATG 2 cut(s) 63, 273
NlaIV GGNNCC 5 cut(s) 18, 28, 29, 47, 177
NmuCI GTSAC 1 cut(s) 120
NsbI TGCGCA 1 cut(s) 292
PceI AGGCCT 1 cut(s) 210
PciSI GCTCTTC 1 cut(s) 311
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PkrI GCNGC 3 cut(s) 159, 320, 439
PleI GAGTC 3 cut(s) 136, 141, 396
PpsI GAGTC 3 cut(s) 136, 141, 396
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 5 cut(s) 18, 28, 29, 47, 177
PspOMI GGGCCC 1 cut(s) 26
PspPI GGNCC 3 cut(s) 26, 27, 46
SapI GCTCTTC 1 cut(s) 311
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 3 cut(s) 158, 319, 438
Sau3AI GATC 1 cut(s) 199
Sau96I GGNCC 3 cut(s) 26, 27, 46
SchI GAGTC 3 cut(s) 136, 142, 397
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 2 cut(s) 21, 30
SetI ASST 7 cut(s) 39, 55, 168, 245, 260, 353, 439
SfaNI GCATC 2 cut(s) 252, 291
SinI GGWCC 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 1 cut(s) 88
SseBI AGGCCT 1 cut(s) 210
SsiI CCGC 3 cut(s) 67, 157, 431
StuI AGGCCT 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 2 cut(s) 179, 359
TaaI ACNGT 1 cut(s) 151
TaqI TCGA 1 cut(s) 260
TasI AATT 1 cut(s) 88
TauI GCSGC 1 cut(s) 160
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 1 cut(s) 120
TseI GCWGC 2 cut(s) 318, 437
Tsp45I GTSAC 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 298
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 46
XcmI CCANNNNNNNNNTGG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.