Rmu_sc0004755.1_g000032

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004755.1
OG0000480
Physical Location & Seq
Reverse (-)
138182 .. 138631
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004755.1_g000032.1.cds

Sequence Viewer

Length: 450 bp
atgctagattctcctgatgccgtggagatgaacactcgccgtacttcccggggagatgctggctccagcaggcctcggcatcaaagcatgagcatcgacagggctcggagtccagaatcgcaccgccttcgagctctccgagaagaatctttcgtcttgcaagattctttggaacataccatgtcagagatcagtaaactgaaggcggagattcgcgatttgtctgcggaggttcagcactccaaagatcacgctgaacacctcaaaattgagctacgcgaatgctacaggtgggagaggttcttagacgaagtcagggttcaaagtcgtgaagatggctaccgtgatgcggtgatcgaatatcgtcagcgcatgattatgaacttcccagagattaaccgatctcttttgccatattatgtgggacctgatggcactcctcgattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

17.6

Weight (kDa)

6.31

Isoelectric Point (pI)

72.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 216, 279
AciI CCGC 4 cut(s) 124, 206, 227, 350
AcuI CTGAAG 1 cut(s) 221
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 349
AgsI TTSAA 1 cut(s) 323
AluBI AGCT 2 cut(s) 134, 274
AluI AGCT 2 cut(s) 134, 274
Alw21I GWGCWC 1 cut(s) 136
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 1 cut(s) 71
AspLEI GCGC 1 cut(s) 372
AspS9I GGNCC 1 cut(s) 425
AsuC2I CCSGG 2 cut(s) 49, 50
AsuHPI GGTGA 1 cut(s) 364
AvaI CYCGRG 1 cut(s) 48
AvaII GGWCC 1 cut(s) 425
BanII GRGCYC 2 cut(s) 106, 136
Bbv12I GWGCWC 1 cut(s) 136
BccI CCATC 2 cut(s) 329, 425
BceAI ACGGC 2 cut(s) 5, 24
BcgI CGANNNNNNTGC 6 cut(s) 76, 110, 110, 144, 206, 240
BcnI CCSGG 2 cut(s) 49, 50
BfaI CTAG 1 cut(s) 5
BfmI CTRYAG 1 cut(s) 286
Bme1390I CCNGG 2 cut(s) 49, 50
Bme18I GGWCC 1 cut(s) 425
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 2 cut(s) 64, 426
BmrFI CCNGG 2 cut(s) 49, 50
BmsI GCATC 5 cut(s) 7, 46, 88, 102, 337
BpmI CTGGAG 1 cut(s) 49
BpuMI CCSGG 2 cut(s) 49, 50
BsaJI CCNNGG 4 cut(s) 21, 48, 49, 74
Bsc4I CCNNNNNNNGG 1 cut(s) 349
BseDI CCNNGG 4 cut(s) 21, 48, 49, 74
BseLI CCNNNNNNNGG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 429
Bsh1236I CGCG 2 cut(s) 216, 279
BshFI GGCC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 136
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 49
BslFI GGGAC 1 cut(s) 438
BslI CCNNNNNNNGG 1 cut(s) 349
BsmFI GGGAC 1 cut(s) 438
BsmI GAATGC 1 cut(s) 287
BsnI GGCC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 48
Bsp1286I GDGCHC 2 cut(s) 106, 136
Bsp143I GATC 4 cut(s) 189, 247, 354, 401
Bsp68I TCGCGA 1 cut(s) 216
BspACI CCGC 4 cut(s) 124, 206, 227, 350
BspANI GGCC 1 cut(s) 73
BspFNI CGCG 2 cut(s) 216, 279
BspLI GGNNCC 2 cut(s) 64, 426
BssECI CCNNGG 4 cut(s) 21, 48, 49, 74
BssMI GATC 4 cut(s) 189, 247, 354, 401
Bst4CI ACNGT 1 cut(s) 344
BstC8I GCNNGC 2 cut(s) 61, 71
BstDEI CTNAG 1 cut(s) 304
BstDSI CCRYGG 1 cut(s) 21
BstFNI CGCG 2 cut(s) 216, 279
BstHHI GCGC 1 cut(s) 372
BstKTI GATC 4 cut(s) 192, 250, 357, 404
BstMBI GATC 4 cut(s) 189, 247, 354, 401
BstSCI CCNGG 2 cut(s) 47, 48
BstSFI CTRYAG 1 cut(s) 286
BstUI CGCG 2 cut(s) 216, 279
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 1 cut(s) 21
BtuMI TCGCGA 1 cut(s) 216
Cac8I GCNNGC 2 cut(s) 61, 71
CfoI GCGC 1 cut(s) 372
Cfr13I GGNCC 1 cut(s) 425
Cfr9I CCCGGG 1 cut(s) 48
Csp6I GTAC 1 cut(s) 42
CviAII CATG 3 cut(s) 88, 181, 373
CviJI RGCY 6 cut(s) 63, 73, 104, 134, 274, 339
CviKI_1 RGCY 6 cut(s) 63, 73, 104, 134, 274, 339
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 1 cut(s) 304
DpnI GATC 4 cut(s) 191, 249, 356, 403
DpnII GATC 4 cut(s) 189, 247, 354, 401
EciI GGCGGA 1 cut(s) 221
Ecl136II GAGCTC 1 cut(s) 134
Eco147I AGGCCT 1 cut(s) 73
Eco24I GRGCYC 2 cut(s) 106, 136
Eco47I GGWCC 1 cut(s) 425
Eco53kI GAGCTC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 221
Eco88I CYCGRG 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 425
EcoT38I GRGCYC 2 cut(s) 106, 136
FaeI CATG 3 cut(s) 91, 184, 376
FaiI YATR 7 cut(s) 89, 177, 182, 374, 380, 415, 420
FaqI GGGAC 1 cut(s) 438
FatI CATG 3 cut(s) 87, 180, 372
FriOI GRGCYC 2 cut(s) 106, 136
FspBI CTAG 1 cut(s) 5
GlaI GCGC 1 cut(s) 371
GsuI CTGGAG 1 cut(s) 49
HaeIII GGCC 1 cut(s) 73
HapII CCGG 1 cut(s) 49
HhaI GCGC 1 cut(s) 372
Hin1II CATG 3 cut(s) 91, 184, 376
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HinfI GANTC 6 cut(s) 8, 109, 116, 146, 164, 211
HpaII CCGG 1 cut(s) 49
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 1 cut(s) 197
Hpy188I TCNGA 3 cut(s) 108, 140, 187
Hpy188III TCNNGA 4 cut(s) 14, 113, 215, 329
Hpy8I GTNNAC 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 137, 196
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4V TGCA 1 cut(s) 160
HpyF3I CTNAG 1 cut(s) 304
Hsp92II CATG 3 cut(s) 91, 184, 376
HspAI GCGC 1 cut(s) 370
Kzo9I GATC 4 cut(s) 189, 247, 354, 401
LmnI GCTCC 1 cut(s) 68
LweI GCATC 5 cut(s) 7, 46, 88, 102, 337
MaeI CTAG 1 cut(s) 5
MalI GATC 4 cut(s) 191, 249, 356, 403
MboI GATC 4 cut(s) 189, 247, 354, 401
MboII GAAGA 2 cut(s) 155, 344
MhlI GDGCHC 2 cut(s) 106, 136
MluCI AATT 1 cut(s) 267
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 5 cut(s) 84, 223, 272, 291, 450
MseI TTAA 1 cut(s) 396
MslI CAYNNNNRTG 1 cut(s) 377
MspI CCGG 1 cut(s) 49
MspR9I CCNGG 2 cut(s) 49, 50
Mva1269I GAATGC 1 cut(s) 287
MvnI CGCG 2 cut(s) 216, 279
NciI CCSGG 2 cut(s) 49, 50
NdeII GATC 4 cut(s) 189, 247, 354, 401
NlaIII CATG 3 cut(s) 91, 184, 376
NlaIV GGNNCC 2 cut(s) 64, 426
NmeAIII GCCGAG 1 cut(s) 55
NruI TCGCGA 1 cut(s) 216
PceI AGGCCT 1 cut(s) 73
PcsI WCGNNNNNNNCGW 1 cut(s) 136
PctI GAATGC 1 cut(s) 287
PfeI GAWTC 5 cut(s) 8, 116, 146, 164, 211
PflFI GACNNNGTC 1 cut(s) 311
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PpuMI RGGWCCY 1 cut(s) 425
Psp124BI GAGCTC 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 425
PspN4I GGNNCC 2 cut(s) 64, 426
PspPI GGNCC 1 cut(s) 425
PspPPI RGGWCCY 1 cut(s) 425
PsyI GACNNNGTC 1 cut(s) 311
RruI TCGCGA 1 cut(s) 216
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
RseI CAYNNNNRTG 1 cut(s) 377
SacI GAGCTC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 396
Sau3AI GATC 4 cut(s) 189, 247, 354, 401
Sau96I GGNCC 1 cut(s) 425
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 2 cut(s) 49, 50
SduI GDGCHC 2 cut(s) 106, 136
SetI ASST 7 cut(s) 136, 234, 264, 276, 293, 302, 430
SfaNI GCATC 5 cut(s) 7, 46, 88, 102, 337
SfcI CTRYAG 1 cut(s) 286
SinI GGWCC 1 cut(s) 425
SmaI CCCGGG 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 377
Sse9I AATT 1 cut(s) 267
SseBI AGGCCT 1 cut(s) 73
SsiI CCGC 4 cut(s) 124, 206, 227, 350
SspMI CTAG 1 cut(s) 5
SstI GAGCTC 1 cut(s) 136
StuI AGGCCT 1 cut(s) 73
StyD4I CCNGG 2 cut(s) 47, 48
TaaI ACNGT 1 cut(s) 344
TaqI TCGA 4 cut(s) 96, 130, 357, 442
TasI AATT 1 cut(s) 267
TfiI GAWTC 5 cut(s) 8, 116, 146, 164, 211
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TspDTI ATGAA 2 cut(s) 44, 395
TspMI CCCGGG 1 cut(s) 48
Tth111I GACNNNGTC 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 425
XmaI CCCGGG 1 cut(s) 48
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.