Rroxscaffold_3G00224840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000480
Physical Location & Seq
Forward (+)
8096072 .. 8099245
3174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00224840.1

Sequence Viewer

Length: 240 bp
ATGGAAGGTCATTTCTATATGTCGAGTGCGCAAACCTTCGTTTACGAATATCTCGCGACTAAGGAAATGTTCAAAAATGTCATCCCTAGTTCTAGGTTTTTGATAGTTGAGGAGGATCGCGTAGACGAGGGTTTAGAGGAGCTCAATGATGACGACGCGGAGGAGAGAGTGCACTCCTACATCGTGTGTGAGTTACCCCAAATAATCCCCCCTCCTCAAAAATTGAGAAAACGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.38

Weight (kDa)

4.81

Isoelectric Point (pI)

65.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 30
AccI GTMKAC 1 cut(s) 123
AccII CGCG 3 cut(s) 56, 120, 158
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 123
AgsI TTSAA 1 cut(s) 73
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Alw21I GWGCWC 2 cut(s) 144, 174
Alw44I GTGCAC 1 cut(s) 170
AlwI GGATC 1 cut(s) 123
ApaLI GTGCAC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 31
BaeGI GKGCMC 1 cut(s) 174
BanII GRGCYC 1 cut(s) 144
Bbv12I GWGCWC 2 cut(s) 144, 174
BfaI CTAG 2 cut(s) 87, 93
BseGI GGATG 1 cut(s) 81
BseRI GAGGAG 4 cut(s) 125, 152, 176, 204
BseSI GKGCMC 1 cut(s) 174
Bsh1236I CGCG 3 cut(s) 56, 120, 158
BsiHKAI GWGCWC 2 cut(s) 144, 174
Bsp1286I GDGCHC 2 cut(s) 144, 174
Bsp143I GATC 1 cut(s) 115
Bsp68I TCGCGA 1 cut(s) 56
BspACI CCGC 1 cut(s) 158
BspFNI CGCG 3 cut(s) 56, 120, 158
BspPI GGATC 1 cut(s) 123
BssMI GATC 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 60
BstF5I GGATG 1 cut(s) 81
BstFNI CGCG 3 cut(s) 56, 120, 158
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstSLI GKGCMC 1 cut(s) 174
BstUI CGCG 3 cut(s) 56, 120, 158
BtsCI GGATG 1 cut(s) 81
BtuMI TCGCGA 1 cut(s) 56
CfoI GCGC 1 cut(s) 31
CseI GACGC 1 cut(s) 164
CviJI RGCY 1 cut(s) 142
CviKI_1 RGCY 1 cut(s) 142
DdeI CTNAG 1 cut(s) 60
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Ecl136II GAGCTC 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 144
Eco53kI GAGCTC 1 cut(s) 142
EcoICRI GAGCTC 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 144
FaiI YATR 2 cut(s) 18, 20
FblI GTMKAC 1 cut(s) 123
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 144
FspBI CTAG 2 cut(s) 87, 93
FspI TGCGCA 1 cut(s) 30
GlaI GCGC 1 cut(s) 30
HgaI GACGC 1 cut(s) 164
HhaI GCGC 1 cut(s) 31
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
Hpy166II GTNNAC 3 cut(s) 43, 124, 172
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 3 cut(s) 43, 124, 172
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 46, 228
HpyCH4V TGCA 1 cut(s) 172
HpyF3I CTNAG 1 cut(s) 60
HspAI GCGC 1 cut(s) 29
Kzo9I GATC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 139
MaeI CTAG 2 cut(s) 87, 93
MaeIII GTNAC 1 cut(s) 192
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MhlI GDGCHC 2 cut(s) 144, 174
MluCI AATT 1 cut(s) 221
MnlI CCTC 7 cut(s) 103, 106, 121, 130, 154, 222, 225
MvnI CGCG 3 cut(s) 56, 120, 158
NdeII GATC 1 cut(s) 115
NruI TCGCGA 1 cut(s) 56
NsbI TGCGCA 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 144
RruI TCGCGA 1 cut(s) 56
SacI GAGCTC 1 cut(s) 144
Sau3AI GATC 1 cut(s) 115
SduI GDGCHC 2 cut(s) 144, 174
SetI ASST 5 cut(s) 10, 38, 98, 144, 239
SgeI CNNG 9 cut(s) 36, 65, 67, 99, 105, 131, 139, 169, 196
Sse9I AATT 1 cut(s) 221
SsiI CCGC 1 cut(s) 158
SspMI CTAG 2 cut(s) 87, 93
SstI GAGCTC 1 cut(s) 144
TaqI TCGA 1 cut(s) 23
TasI AATT 1 cut(s) 221
VneI GTGCAC 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 2 cut(s) 87, 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.