Rmu_sc0009656.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009656.1
OG0000480
Physical Location & Seq
Forward (+)
5591 .. 6598
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009656.1_g000001.1.cds

Sequence Viewer

Length: 765 bp
atggaaggattgcctctatctatgcatgatcccaggcttcacggccgtcatctggttacctttgttcgtagtttcacagctgctgtttgctttgcttctttggcttcctctacgcctcctttttcccctcacaccatggaccttgggtgcccctctgcaggtcgcggcaagcaaatcattgttcggaacgaacattcccctgatcgccggtcgcccacccccaatgcgattccatcctacagttcttctaataggtctgactcgcgtgctggtgaatttctttttgacgataacgctctcctgagttccaaaggtgcagcgggccataccaacgtcattgaggccggtgtaccatttgccccgaggtccggtattggtgcgagtcgctctcgccgacgtagcttgagttccgataggatcaaaactcctgagtcgtgtcgtctcagagctcttcgggaggagtcttttgtcttgcaagactcgctcgatcatgccatttcggagatctatagcttgaaagcagaagtccgagatctgtcagcggaggttaagcgttcgagagatcatgctgaaaatctaaagctcgaacttcgtgagtgctatcgtcgggagaggttccttgacgaagttcgtgttcaaagccgcgaagacggttaccgtgatgcagtcattgaataccgtcagaggatgatactgaacttccccaatatcgacacatctctactgccatattacgtgggtcctgacggtgccccgcggccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

28.44

Weight (kDa)

8.96

Isoelectric Point (pI)

71.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 149
AccB1I GGYRCC 2 cut(s) 147, 749
AccII CGCG 4 cut(s) 165, 265, 645, 757
AciI CCGC 6 cut(s) 165, 320, 542, 643, 755, 757
AclWI GGATC 2 cut(s) 23, 425
AcoI YGGCCR 2 cut(s) 43, 758
AcsI RAATTY 1 cut(s) 275
AfaI GTAC 1 cut(s) 351
AfiI CCNNNNNNNGG 3 cut(s) 52, 158, 368
AgsI TTSAA 3 cut(s) 517, 638, 674
AjnI CCWGG 1 cut(s) 32
AloI GAACNNNNNNTCC 2 cut(s) 179, 211
AluBI AGCT 5 cut(s) 80, 402, 449, 513, 583
AluI AGCT 5 cut(s) 80, 402, 449, 513, 583
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 1 cut(s) 446
AlwI GGATC 2 cut(s) 23, 425
AlwNI CAGNNNCTG 1 cut(s) 83
Ama87I CYCGRG 1 cut(s) 361
AoxI GGCC 4 cut(s) 43, 322, 342, 758
ApeKI GCWGC 2 cut(s) 80, 317
ApoI RAATTY 1 cut(s) 275
AspS9I GGNCC 4 cut(s) 139, 322, 366, 740
AsuHPI GGTGA 1 cut(s) 284
AvaI CYCGRG 1 cut(s) 361
AvaII GGWCC 3 cut(s) 139, 366, 740
BaeGI GKGCMC 2 cut(s) 152, 754
BanI GGYRCC 2 cut(s) 147, 749
BanII GRGCYC 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 654
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 2 cut(s) 67, 329
BccI CCATC 1 cut(s) 241
BceAI ACGGC 2 cut(s) 30, 58
BciT130I CCWGG 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 446
BfmI CTRYAG 3 cut(s) 156, 238, 508
BfuAI ACCTGC 1 cut(s) 149
BglII AGATCT 2 cut(s) 504, 532
BisI GCNGC 5 cut(s) 81, 166, 318, 643, 758
BlsI GCNGC 5 cut(s) 82, 167, 319, 644, 759
Bme1390I CCNGG 1 cut(s) 34
Bme18I GGWCC 3 cut(s) 139, 366, 740
BmeT110I CYCGRG 1 cut(s) 361
BmgT120I GGNCC 4 cut(s) 139, 322, 366, 740
BmiI GGNNCC 4 cut(s) 149, 617, 741, 751
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 1 cut(s) 652
BpiI GAAGAC 1 cut(s) 654
BplI GAGNNNNNCTC 2 cut(s) 373, 405
BpuEI CTTGAG 1 cut(s) 424
BsaAI YACGTR 1 cut(s) 736
BsaJI CCNNGG 5 cut(s) 32, 135, 142, 362, 755
BsaWI WCCGGW 1 cut(s) 368
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 158, 368
Bse118I RCCGGY 2 cut(s) 207, 344
BseBI CCWGG 1 cut(s) 34
BseDI CCNNGG 5 cut(s) 32, 135, 142, 362, 755
BseGI GGATG 2 cut(s) 233, 693
BseLI CCNNNNNNNGG 3 cut(s) 52, 158, 368
BseMII CTCAG 3 cut(s) 293, 420, 457
BseRI GAGGAG 1 cut(s) 473
BseSI GKGCMC 2 cut(s) 152, 754
BseX3I CGGCCG 1 cut(s) 43
BseXI GCAGC 2 cut(s) 67, 329
BsgI GTGCAG 1 cut(s) 336
Bsh1236I CGCG 4 cut(s) 165, 265, 645, 757
Bsh1285I CGRYCG 2 cut(s) 46, 212
BshFI GGCC 4 cut(s) 45, 324, 344, 760
BshNI GGYRCC 2 cut(s) 147, 749
BsiEI CGRYCG 2 cut(s) 46, 212
BsiHKAI GWGCWC 1 cut(s) 451
BsiHKCI CYCGRG 1 cut(s) 361
BsiSI CCGG 3 cut(s) 208, 345, 369
BslI CCNNNNNNNGG 3 cut(s) 52, 158, 368
BsmAI GTCTC 1 cut(s) 446
BsmBI CGTCTC 1 cut(s) 446
BsnI GGCC 4 cut(s) 45, 324, 344, 760
BsoBI CYCGRG 1 cut(s) 361
Bsp1286I GDGCHC 3 cut(s) 152, 451, 754
Bsp143I GATC 7 cut(s) 28, 202, 417, 487, 504, 532, 562
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 6 cut(s) 165, 320, 542, 643, 755, 757
BspANI GGCC 4 cut(s) 45, 324, 344, 760
BspCNI CTCAG 3 cut(s) 294, 421, 456
BspFNI CGCG 4 cut(s) 165, 265, 645, 757
BspLI GGNNCC 4 cut(s) 149, 617, 741, 751
BspMAI CTGCAG 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 149
BspPI GGATC 2 cut(s) 23, 425
BspQI GCTCTTC 1 cut(s) 456
BspT107I GGYRCC 2 cut(s) 147, 749
BsrFI RCCGGY 2 cut(s) 207, 344
BssAI RCCGGY 2 cut(s) 207, 344
BssECI CCNNGG 5 cut(s) 32, 135, 142, 362, 755
BssMI GATC 7 cut(s) 28, 202, 417, 487, 504, 532, 562
BssT1I CCWWGG 2 cut(s) 135, 142
Bst2UI CCWGG 1 cut(s) 34
Bst4CI ACNGT 5 cut(s) 242, 653, 659, 680, 749
Bst6I CTCTTC 1 cut(s) 456
BstBAI YACGTR 1 cut(s) 736
BstC8I GCNNGC 3 cut(s) 170, 267, 322
BstDEI CTNAG 3 cut(s) 302, 429, 443
BstDSI CCRYGG 2 cut(s) 135, 755
BstEII GGTNACC 2 cut(s) 55, 653
BstF5I GGATG 2 cut(s) 233, 693
BstFNI CGCG 4 cut(s) 165, 265, 645, 757
BstKTI GATC 7 cut(s) 31, 205, 420, 490, 507, 535, 565
BstMAI GTCTC 1 cut(s) 446
BstMBI GATC 7 cut(s) 28, 202, 417, 487, 504, 532, 562
BstMCI CGRYCG 2 cut(s) 46, 212
BstMWI GCNNNNNNNGC 3 cut(s) 101, 399, 481
BstNI CCWGG 1 cut(s) 34
BstPI GGTNACC 2 cut(s) 55, 653
BstSCI CCNGG 1 cut(s) 32
BstSFI CTRYAG 3 cut(s) 156, 238, 508
BstSLI GKGCMC 2 cut(s) 152, 754
BstUI CGCG 4 cut(s) 165, 265, 645, 757
BstV1I GCAGC 2 cut(s) 67, 329
BstV2I GAAGAC 1 cut(s) 654
BstX2I RGATCY 2 cut(s) 504, 532
BstYI RGATCY 2 cut(s) 504, 532
BstZI CGGCCG 1 cut(s) 43
BsuRI GGCC 4 cut(s) 45, 324, 344, 760
BtgI CCRYGG 2 cut(s) 135, 755
BtsCI GGATG 2 cut(s) 233, 693
BveI ACCTGC 1 cut(s) 149
Cac8I GCNNGC 3 cut(s) 170, 267, 322
CaiI CAGNNNCTG 1 cut(s) 83
Cfr10I RCCGGY 2 cut(s) 207, 344
Cfr13I GGNCC 4 cut(s) 139, 322, 366, 740
Cfr42I CCGCGG 1 cut(s) 758
Csp6I GTAC 1 cut(s) 350
CviAII CATG 5 cut(s) 26, 136, 491, 566, 762
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 3 cut(s) 302, 429, 443
DpnI GATC 7 cut(s) 30, 204, 419, 489, 506, 534, 564
DpnII GATC 7 cut(s) 28, 202, 417, 487, 504, 532, 562
EaeI YGGCCR 2 cut(s) 43, 758
EagI CGGCCG 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
Ecl136II GAGCTC 1 cut(s) 449
EclXI CGGCCG 1 cut(s) 43
Eco130I CCWWGG 2 cut(s) 135, 142
Eco24I GRGCYC 1 cut(s) 451
Eco47I GGWCC 3 cut(s) 139, 366, 740
Eco52I CGGCCG 1 cut(s) 43
Eco53kI GAGCTC 1 cut(s) 449
Eco88I CYCGRG 1 cut(s) 361
Eco91I GGTNACC 2 cut(s) 55, 653
EcoICRI GAGCTC 1 cut(s) 449
EcoO109I RGGNCCY 1 cut(s) 740
EcoO65I GGTNACC 2 cut(s) 55, 653
EcoRII CCWGG 1 cut(s) 32
EcoT14I CCWWGG 2 cut(s) 135, 142
EcoT22I ATGCAT 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 451
ErhI CCWWGG 2 cut(s) 135, 142
Esp3I CGTCTC 1 cut(s) 446
FaeI CATG 5 cut(s) 29, 139, 494, 569, 765
FaiI YATR 9 cut(s) 23, 27, 137, 327, 492, 510, 567, 730, 763
FatI CATG 5 cut(s) 25, 135, 490, 565, 761
FauI CCCGC 2 cut(s) 313, 762
Fnu4HI GCNGC 5 cut(s) 81, 166, 318, 643, 758
FokI GGATG 2 cut(s) 220, 700
FriOI GRGCYC 1 cut(s) 451
Fsp4HI GCNGC 5 cut(s) 81, 166, 318, 643, 758
GluI GCNGC 5 cut(s) 81, 166, 318, 643, 758
HaeIII GGCC 4 cut(s) 45, 324, 344, 760
HapII CCGG 3 cut(s) 208, 345, 369
Hin1II CATG 5 cut(s) 29, 139, 494, 569, 765
HinfI GANTC 6 cut(s) 229, 260, 382, 431, 461, 479
HpaII CCGG 3 cut(s) 208, 345, 369
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 1 cut(s) 350
Hpy188I TCNGA 7 cut(s) 186, 259, 412, 446, 502, 530, 684
Hpy188III TCNNGA 7 cut(s) 301, 428, 455, 558, 593, 608, 743
Hpy8I GTNNAC 1 cut(s) 350
Hpy99I CGWCG 2 cut(s) 399, 609
HpyCH4III ACNGT 5 cut(s) 242, 653, 659, 680, 749
HpyCH4IV ACGT 3 cut(s) 333, 397, 735
HpyCH4V TGCA 5 cut(s) 25, 158, 317, 475, 665
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 399, 481
HpyF3I CTNAG 3 cut(s) 302, 429, 443
HpySE526I ACGT 3 cut(s) 333, 397, 735
Hsp92II CATG 5 cut(s) 29, 139, 494, 569, 765
KspI CCGCGG 1 cut(s) 758
Kzo9I GATC 7 cut(s) 28, 202, 417, 487, 504, 532, 562
LguI GCTCTTC 1 cut(s) 456
Lsp1109I GCAGC 2 cut(s) 67, 329
LweI GCATC 1 cut(s) 652
MaeII ACGT 3 cut(s) 333, 397, 735
MaeIII GTNAC 2 cut(s) 55, 653
MalI GATC 7 cut(s) 30, 204, 419, 489, 506, 534, 564
MboI GATC 7 cut(s) 28, 202, 417, 487, 504, 532, 562
MboII GAAGA 3 cut(s) 237, 443, 659
MflI RGATCY 2 cut(s) 504, 532
MhlI GDGCHC 3 cut(s) 152, 451, 754
MluCI AATT 1 cut(s) 275
MlyI GAGTC 5 cut(s) 254, 391, 440, 470, 473
Mph1103I ATGCAT 1 cut(s) 27
MseI TTAA 1 cut(s) 549
MspA1I CMGCKG 4 cut(s) 80, 320, 542, 757
MspI CCGG 3 cut(s) 208, 345, 369
MspR9I CCNGG 1 cut(s) 34
MvaI CCWGG 1 cut(s) 34
MvnI CGCG 4 cut(s) 165, 265, 645, 757
MwoI GCNNNNNNNGC 3 cut(s) 101, 399, 481
NcoI CCATGG 1 cut(s) 135
NdeII GATC 7 cut(s) 28, 202, 417, 487, 504, 532, 562
NlaIII CATG 5 cut(s) 29, 139, 494, 569, 765
NlaIV GGNNCC 4 cut(s) 149, 617, 741, 751
NsiI ATGCAT 1 cut(s) 27
PciSI GCTCTTC 1 cut(s) 456
PcsI WCGNNNNNNNCGW 1 cut(s) 391
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 5 cut(s) 82, 167, 319, 644, 759
PleI GAGTC 5 cut(s) 254, 390, 439, 469, 473
PpsI GAGTC 5 cut(s) 254, 390, 439, 469, 473
Ppu21I YACGTR 1 cut(s) 736
PpuMI RGGWCCY 1 cut(s) 740
Psp124BI GAGCTC 1 cut(s) 451
Psp5II RGGWCCY 1 cut(s) 740
Psp6I CCWGG 1 cut(s) 32
PspEI GGTNACC 2 cut(s) 55, 653
PspGI CCWGG 1 cut(s) 32
PspN4I GGNNCC 4 cut(s) 149, 617, 741, 751
PspPI GGNCC 4 cut(s) 139, 322, 366, 740
PspPPI RGGWCCY 1 cut(s) 740
PsrI GAACNNNNNNTAC 2 cut(s) 391, 423
PstI CTGCAG 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 83
PsuI RGATCY 2 cut(s) 504, 532
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
SacI GAGCTC 1 cut(s) 451
SacII CCGCGG 1 cut(s) 758
SapI GCTCTTC 1 cut(s) 456
SaqAI TTAA 1 cut(s) 549
SatI GCNGC 5 cut(s) 81, 166, 318, 643, 758
Sau3AI GATC 7 cut(s) 28, 202, 417, 487, 504, 532, 562
Sau96I GGNCC 4 cut(s) 139, 322, 366, 740
SchI GAGTC 5 cut(s) 254, 391, 440, 470, 473
ScrFI CCNGG 1 cut(s) 34
SduI GDGCHC 3 cut(s) 152, 451, 754
SfaNI GCATC 1 cut(s) 652
SfcI CTRYAG 3 cut(s) 156, 238, 508
Sfr303I CCGCGG 1 cut(s) 758
SgrBI CCGCGG 1 cut(s) 758
SinI GGWCC 3 cut(s) 139, 366, 740
SmlI CTYRAG 1 cut(s) 403
SmoI CTYRAG 1 cut(s) 403
Sse9I AATT 1 cut(s) 275
SsiI CCGC 6 cut(s) 165, 320, 542, 643, 755, 757
SstI GAGCTC 1 cut(s) 451
StyD4I CCNGG 1 cut(s) 32
StyI CCWWGG 2 cut(s) 135, 142
TaaI ACNGT 5 cut(s) 242, 653, 659, 680, 749
TaiI ACGT 3 cut(s) 336, 400, 738
TaqI TCGA 4 cut(s) 486, 557, 585, 711
TasI AATT 1 cut(s) 275
TauI GCSGC 3 cut(s) 168, 645, 760
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TseI GCWGC 2 cut(s) 80, 317
VpaK11BI GGWCC 3 cut(s) 139, 366, 740
XapI RAATTY 1 cut(s) 275
Zsp2I ATGCAT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.