Rmu_sc0006287.1_g000035

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006287.1
OG0000480
Physical Location & Seq
Forward (+)
75282 .. 75635
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006287.1_g000035.1.cds

Sequence Viewer

Length: 354 bp
atgaggacaatggtggaattgacctccgttcttgaggacaagaaccacaagataacgaagctgaagaatgacgtggcctcagtaactcgaagcaaggacgaggagttccaaaaaggtgctgctcagataaagcgcgtgttagccaaatactttcgactcgggtggaatcaatctttgaccgaagaagacaaaaggcgctacgtaggccttgacgagttcgaccgtttttatgggtttgatcatgtgggttattctcccattcgcagcatgtggcctggtgatgtctcgtcacagcctcgagcgcatctgactaggaggaggaggaggtgtcatccgccacttgagttagactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.84

Weight (kDa)

9.67

Isoelectric Point (pI)

70.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 135
AciI CCGC 1 cut(s) 335
AcuI CTGAAG 1 cut(s) 83
AjiI CACGTC 1 cut(s) 73
AjnI CCWGG 1 cut(s) 274
AloI GAACNNNNNNTCC 2 cut(s) 89, 121
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
Alw26I GTCTC 1 cut(s) 289
Ama87I CYCGRG 2 cut(s) 158, 297
AoxI GGCC 3 cut(s) 75, 205, 272
ApeKI GCWGC 2 cut(s) 119, 264
AspLEI GCGC 3 cut(s) 135, 198, 304
AsuHPI GGTGA 1 cut(s) 290
AvaI CYCGRG 2 cut(s) 158, 297
BbsI GAAGAC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 106, 276
BciT130I CCWGG 1 cut(s) 276
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 289
BfaI CTAG 1 cut(s) 312
BfoI RGCGCY 1 cut(s) 199
BisI GCNGC 2 cut(s) 120, 265
BlsI GCNGC 2 cut(s) 121, 266
Bme1390I CCNGG 1 cut(s) 276
BmeT110I CYCGRG 2 cut(s) 158, 297
BmgBI CACGTC 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 1 cut(s) 313
BpiI GAAGAC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 53
BsaAI YACGTR 1 cut(s) 202
BsaXI ACNNNNNCTCC 2 cut(s) 313, 343
BseBI CCWGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 331
BseMII CTCAG 2 cut(s) 93, 137
BseRI GAGGAG 4 cut(s) 116, 331, 334, 337
BseXI GCAGC 2 cut(s) 106, 276
Bsh1236I CGCG 1 cut(s) 135
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 3 cut(s) 77, 207, 274
BsiEI CGRYCG 1 cut(s) 223
BsiHKCI CYCGRG 2 cut(s) 158, 297
BsmAI GTCTC 1 cut(s) 289
BsnI GGCC 3 cut(s) 77, 207, 274
BsoBI CYCGRG 2 cut(s) 158, 297
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 1 cut(s) 335
BspANI GGCC 3 cut(s) 77, 207, 274
BspCNI CTCAG 2 cut(s) 92, 136
BspFNI CGCG 1 cut(s) 135
BssMI GATC 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 224
BstBAI YACGTR 1 cut(s) 202
BstDEI CTNAG 2 cut(s) 79, 123
BstF5I GGATG 1 cut(s) 331
BstFNI CGCG 1 cut(s) 135
BstH2I RGCGCY 1 cut(s) 199
BstHHI GCGC 3 cut(s) 135, 198, 304
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 1 cut(s) 238
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 2 cut(s) 204, 301
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 274
BstSNI TACGTA 1 cut(s) 202
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 2 cut(s) 106, 276
BstV2I GAAGAC 1 cut(s) 192
BsuRI GGCC 3 cut(s) 77, 207, 274
BtrI CACGTC 1 cut(s) 73
BtsCI GGATG 1 cut(s) 331
CfoI GCGC 3 cut(s) 135, 198, 304
CviAII CATG 2 cut(s) 242, 268
CviJI RGCY 6 cut(s) 61, 77, 143, 207, 274, 295
CviKI_1 RGCY 6 cut(s) 61, 77, 143, 207, 274, 295
DdeI CTNAG 2 cut(s) 79, 123
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
EciI GGCGGA 1 cut(s) 324
Eco105I TACGTA 1 cut(s) 202
Eco147I AGGCCT 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 83
Eco88I CYCGRG 2 cut(s) 158, 297
EcoRII CCWGG 1 cut(s) 274
FaeI CATG 2 cut(s) 245, 271
FaiI YATR 3 cut(s) 231, 243, 269
FatI CATG 2 cut(s) 241, 267
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 120, 265
FokI GGATG 1 cut(s) 318
Fsp4HI GCNGC 2 cut(s) 120, 265
FspBI CTAG 1 cut(s) 312
GlaI GCGC 3 cut(s) 134, 197, 303
GluI GCNGC 2 cut(s) 120, 265
HaeII RGCGCY 1 cut(s) 199
HaeIII GGCC 3 cut(s) 77, 207, 274
HhaI GCGC 3 cut(s) 135, 198, 304
Hin1II CATG 2 cut(s) 245, 271
Hin6I GCGC 3 cut(s) 133, 196, 302
HinP1I GCGC 3 cut(s) 133, 196, 302
HinfI GANTC 2 cut(s) 156, 166
HphI GGTGA 1 cut(s) 290
Hpy188I TCNGA 2 cut(s) 126, 309
Hpy188III TCNNGA 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4IV ACGT 2 cut(s) 72, 201
HpyF10VI GCNNNNNNNGC 2 cut(s) 204, 301
HpyF3I CTNAG 2 cut(s) 79, 123
HpySE526I ACGT 2 cut(s) 72, 201
Hsp92II CATG 2 cut(s) 245, 271
HspAI GCGC 3 cut(s) 133, 196, 302
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 1 cut(s) 238
LpnPI CCDG 2 cut(s) 261, 288
Lsp1109I GCAGC 2 cut(s) 106, 276
LweI GCATC 1 cut(s) 313
MaeI CTAG 1 cut(s) 312
MaeII ACGT 2 cut(s) 72, 201
MaeIII GTNAC 2 cut(s) 82, 288
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 3 cut(s) 76, 194, 197
MluCI AATT 1 cut(s) 17
MlyI GAGTC 1 cut(s) 150
MnlI CCTC 9 cut(s) 28, 34, 88, 94, 306, 309, 312, 315, 318
MspR9I CCNGG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 276
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 204, 301
NdeII GATC 1 cut(s) 238
NlaIII CATG 2 cut(s) 245, 271
NmuCI GTSAC 1 cut(s) 288
NspI RCATGY 1 cut(s) 271
PaeR7I CTCGAG 1 cut(s) 297
PceI AGGCCT 1 cut(s) 207
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 2 cut(s) 121, 266
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
Ppu21I YACGTR 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspXI VCTCGAGB 1 cut(s) 297
SatI GCNGC 2 cut(s) 120, 265
Sau3AI GATC 1 cut(s) 238
SchI GAGTC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 276
SetI ASST 6 cut(s) 26, 63, 75, 118, 204, 329
SfaNI GCATC 1 cut(s) 313
Sfr274I CTCGAG 1 cut(s) 297
SlaI CTCGAG 1 cut(s) 297
SmlI CTYRAG 3 cut(s) 32, 297, 341
SmoI CTYRAG 3 cut(s) 32, 297, 341
SnaBI TACGTA 1 cut(s) 202
Sse9I AATT 1 cut(s) 17
SseBI AGGCCT 1 cut(s) 207
SsiI CCGC 1 cut(s) 335
SspMI CTAG 1 cut(s) 312
StuI AGGCCT 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 274
TaaI ACNGT 1 cut(s) 224
TaiI ACGT 2 cut(s) 75, 204
TaqI TCGA 4 cut(s) 88, 154, 219, 298
TaqII GACCGA 1 cut(s) 194
TasI AATT 1 cut(s) 17
TfiI GAWTC 1 cut(s) 166
TseFI GTSAC 1 cut(s) 288
TseI GCWGC 2 cut(s) 119, 264
Tsp45I GTSAC 1 cut(s) 288
TspGWI ACGGA 1 cut(s) 16
XceI RCATGY 1 cut(s) 271
XhoI CTCGAG 1 cut(s) 297
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.