Rroxscaffold_1G00044950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000480
Physical Location & Seq
Reverse (-)
64023038 .. 64023929
892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00044950.1

Sequence Viewer

Length: 729 bp
ATGCCGGATACTACCGCTCATCCATCCCCTCGAAGTGCCCATACGTCCTCGGCAACCCGATCGGTCATGATGCCTCCTCCTCCACCCAAAGTTCTAGAATTAAGTTTCGGGAAGCGCGACAACTCCTATGTTCGGGCGGGAGAATCCATGCTCGCCAATGGTCCGGCCGCGTCGGCGTTCTTTCCTTCCTGTACGGAGCCCTCACGGCGTCCCACCACTTCTGCGCAGCCTCGACGCCTTCCGGTTAAAGCAACAACAACGTTGGACGAGGCTAGTCGCCAAGTCAAAGCCCGGGAAGAGGAGCTTAACGAACAGATGAAAACAATGGTGGACCTAAGTCACCTCCTCGAGGACAAAGATCGTCGGATAGCGACATTGAAAGCCGACTTGGACTTAGTAACTCGGAGTAAGGAGGAGGAGTTCGAGAGAGGGGTTGCTCGGATGAAGCGCGTATCGGCCAAAAATTTTCGGCCGAGGTGGAATCAAGCCACGACCAAAGAGGAGGACAGGTGCTACGTTGGCCCGGATGAATTCGACCATTACTACGGCTTTGCCCCCATGTGCTACTCTCCCATTCGTGGCATGCTTCCCGGAGACGTTCCCTCCCATGCATCCAACTCTTCGAAGGCCATGGCCATGGGGATGAAGAAGTGTCCTCTACCCTCTATCCAAATGAATGTCCGAGTTCATTGCATGGTGATTGACTTTTGCTTCTTTCTTTTTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

27.19

Weight (kDa)

9.04

Isoelectric Point (pI)

63.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 347
Acc16I TGCGCA 1 cut(s) 225
AccBSI CCGCTC 1 cut(s) 17
AccII CGCG 3 cut(s) 117, 170, 450
AciI CCGC 3 cut(s) 15, 137, 168
AclI AACGTT 1 cut(s) 260
AcoI YGGCCR 4 cut(s) 165, 456, 470, 633
AcsI RAATTY 2 cut(s) 463, 530
AcyI GRCGYC 2 cut(s) 208, 235
AfaI GTAC 1 cut(s) 193
AfiI CCNNNNNNNGG 4 cut(s) 132, 298, 349, 578
AgsI TTSAA 1 cut(s) 379
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AloI GAACNNNNNNTCC 2 cut(s) 404, 436
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Alw26I GTCTC 1 cut(s) 588
Ama87I CYCGRG 2 cut(s) 291, 347
AoxI GGCC 6 cut(s) 165, 456, 470, 520, 627, 633
ApeKI GCWGC 1 cut(s) 226
ApoI RAATTY 2 cut(s) 463, 530
AspLEI GCGC 3 cut(s) 117, 226, 450
AspS9I GGNCC 3 cut(s) 161, 331, 521
AsuC2I CCSGG 4 cut(s) 292, 293, 524, 591
AsuHPI GGTGA 2 cut(s) 332, 709
AsuII TTCGAA 1 cut(s) 623
AvaI CYCGRG 2 cut(s) 291, 347
AvaII GGWCC 2 cut(s) 161, 331
BaeGI GKGCMC 1 cut(s) 40
BalI TGGCCA 1 cut(s) 635
BanII GRGCYC 1 cut(s) 201
BarI GAAGNNNNNNTAC 2 cut(s) 25, 57
BbvI GCAGC 1 cut(s) 238
BccI CCATC 1 cut(s) 31
BceAI ACGGC 2 cut(s) 221, 562
BcgI CGANNNNNNTGC 4 cut(s) 42, 76, 672, 706
BcnI CCSGG 4 cut(s) 292, 293, 524, 591
BcoDI GTCTC 1 cut(s) 588
BfaI CTAG 2 cut(s) 95, 273
BglI GCCNNNNNGGC 2 cut(s) 173, 205
BisI GCNGC 2 cut(s) 168, 227
BlsI GCNGC 2 cut(s) 169, 228
Bme1390I CCNGG 4 cut(s) 292, 293, 524, 591
Bme18I GGWCC 2 cut(s) 161, 331
BmeT110I CYCGRG 2 cut(s) 291, 347
BmgT120I GGNCC 3 cut(s) 161, 331, 521
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 4 cut(s) 292, 293, 524, 591
BmsI GCATC 2 cut(s) 60, 620
BoxI GACNNNNGTC 1 cut(s) 336
Bpu14I TTCGAA 1 cut(s) 623
BpuMI CCSGG 4 cut(s) 292, 293, 524, 591
BsaHI GRCGYC 2 cut(s) 208, 235
BsaJI CCNNGG 5 cut(s) 48, 291, 473, 630, 636
BsaWI WCCGGW 1 cut(s) 241
BsaXI ACNNNNNCTCC 6 cut(s) 404, 434, 494, 524, 587, 617
Bsc4I CCNNNNNNNGG 4 cut(s) 132, 298, 349, 578
Bse3DI GCAATG 1 cut(s) 688
BseDI CCNNGG 5 cut(s) 48, 291, 473, 630, 636
BseGI GGATG 6 cut(s) 19, 23, 447, 532, 611, 648
BseLI CCNNNNNNNGG 4 cut(s) 132, 298, 349, 578
BseMI GCAATG 1 cut(s) 688
BseRI GAGGAG 7 cut(s) 66, 69, 314, 335, 428, 431, 515
BseSI GKGCMC 1 cut(s) 40
BseX3I CGGCCG 2 cut(s) 165, 470
BseXI GCAGC 1 cut(s) 238
Bsh1236I CGCG 3 cut(s) 117, 170, 450
Bsh1285I CGRYCG 3 cut(s) 62, 168, 473
BshFI GGCC 6 cut(s) 167, 458, 472, 522, 629, 635
BsiEI CGRYCG 3 cut(s) 62, 168, 473
BsiHKCI CYCGRG 2 cut(s) 291, 347
BsiSI CCGG 6 cut(s) 5, 164, 242, 292, 524, 591
BslFI GGGAC 1 cut(s) 195
BslI CCNNNNNNNGG 4 cut(s) 132, 298, 349, 578
BsmAI GTCTC 1 cut(s) 588
BsmBI CGTCTC 1 cut(s) 588
BsmFI GGGAC 1 cut(s) 195
BsnI GGCC 6 cut(s) 167, 458, 472, 522, 629, 635
BsoBI CYCGRG 2 cut(s) 291, 347
Bsp119I TTCGAA 1 cut(s) 623
Bsp1286I GDGCHC 2 cut(s) 40, 201
Bsp143I GATC 2 cut(s) 59, 358
Bsp19I CCATGG 2 cut(s) 630, 636
BspACI CCGC 3 cut(s) 15, 137, 168
BspANI GGCC 6 cut(s) 167, 458, 472, 522, 629, 635
BspFNI CGCG 3 cut(s) 117, 170, 450
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 198
BspT104I TTCGAA 1 cut(s) 623
BsrBI CCGCTC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 688
BssECI CCNNGG 5 cut(s) 48, 291, 473, 630, 636
BssMI GATC 2 cut(s) 59, 358
BssNI GRCGYC 2 cut(s) 208, 235
BssT1I CCWWGG 2 cut(s) 630, 636
Bst6I CTCTTC 2 cut(s) 291, 625
BstACI GRCGYC 2 cut(s) 208, 235
BstBI TTCGAA 1 cut(s) 623
BstC8I GCNNGC 2 cut(s) 153, 584
BstDEI CTNAG 2 cut(s) 335, 394
BstDSI CCRYGG 2 cut(s) 630, 636
BstENI CCTNNNNNAGG 1 cut(s) 347
BstF5I GGATG 6 cut(s) 19, 23, 447, 532, 611, 648
BstFNI CGCG 3 cut(s) 117, 170, 450
BstHHI GCGC 3 cut(s) 117, 226, 450
BstKTI GATC 2 cut(s) 62, 361
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 2 cut(s) 59, 358
BstMCI CGRYCG 3 cut(s) 62, 168, 473
BstMWI GCNNNNNNNGC 3 cut(s) 173, 205, 519
BstNSI RCATGY 1 cut(s) 586
BstPAI GACNNNNGTC 1 cut(s) 336
BstSCI CCNGG 4 cut(s) 290, 291, 522, 589
BstSLI GKGCMC 1 cut(s) 40
BstUI CGCG 3 cut(s) 117, 170, 450
BstV1I GCAGC 1 cut(s) 238
BstXI CCANNNNNNTGG 1 cut(s) 637
BstZI CGGCCG 2 cut(s) 165, 470
BsuRI GGCC 6 cut(s) 167, 458, 472, 522, 629, 635
BtgI CCRYGG 2 cut(s) 630, 636
BtsCI GGATG 6 cut(s) 19, 23, 447, 532, 611, 648
Cac8I GCNNGC 2 cut(s) 153, 584
CciI TCATGA 1 cut(s) 66
CfoI GCGC 3 cut(s) 117, 226, 450
Cfr13I GGNCC 3 cut(s) 161, 331, 521
Cfr9I CCCGGG 1 cut(s) 291
CseI GACGC 3 cut(s) 159, 197, 243
Csp6I GTAC 1 cut(s) 192
CviAII CATG 8 cut(s) 67, 148, 559, 583, 608, 631, 637, 694
CviQI GTAC 1 cut(s) 192
DdeI CTNAG 2 cut(s) 335, 394
DpnI GATC 2 cut(s) 61, 360
DpnII GATC 2 cut(s) 59, 358
EaeI YGGCCR 4 cut(s) 165, 456, 470, 633
EagI CGGCCG 2 cut(s) 165, 470
Eam1104I CTCTTC 2 cut(s) 291, 625
EarI CTCTTC 2 cut(s) 291, 625
EclXI CGGCCG 2 cut(s) 165, 470
Eco130I CCWWGG 2 cut(s) 630, 636
Eco24I GRGCYC 1 cut(s) 201
Eco47I GGWCC 2 cut(s) 161, 331
Eco52I CGGCCG 2 cut(s) 165, 470
Eco88I CYCGRG 2 cut(s) 291, 347
EcoNI CCTNNNNNAGG 1 cut(s) 347
EcoRI GAATTC 1 cut(s) 530
EcoT14I CCWWGG 2 cut(s) 630, 636
EcoT22I ATGCAT 1 cut(s) 613
EcoT38I GRGCYC 1 cut(s) 201
ErhI CCWWGG 2 cut(s) 630, 636
Esp3I CGTCTC 1 cut(s) 588
FaeI CATG 8 cut(s) 70, 151, 562, 586, 611, 634, 640, 697
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FaqI GGGAC 1 cut(s) 195
FatI CATG 8 cut(s) 66, 147, 558, 582, 607, 630, 636, 693
FauI CCCGC 1 cut(s) 130
Fnu4HI GCNGC 2 cut(s) 168, 227
FokI GGATG 6 cut(s) 6, 10, 454, 539, 598, 655
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 2 cut(s) 168, 227
FspBI CTAG 2 cut(s) 95, 273
FspI TGCGCA 1 cut(s) 225
GlaI GCGC 3 cut(s) 116, 225, 449
GluI GCNGC 2 cut(s) 168, 227
HaeIII GGCC 6 cut(s) 167, 458, 472, 522, 629, 635
HapII CCGG 6 cut(s) 5, 164, 242, 292, 524, 591
HgaI GACGC 3 cut(s) 159, 197, 243
HhaI GCGC 3 cut(s) 117, 226, 450
Hin1I GRCGYC 2 cut(s) 208, 235
Hin1II CATG 8 cut(s) 70, 151, 562, 586, 611, 634, 640, 697
Hin6I GCGC 3 cut(s) 115, 224, 448
HinP1I GCGC 3 cut(s) 115, 224, 448
HinfI GANTC 2 cut(s) 143, 481
HpaII CCGG 6 cut(s) 5, 164, 242, 292, 524, 591
HphI GGTGA 2 cut(s) 332, 709
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 4 cut(s) 366, 405, 441, 683
Hpy188III TCNNGA 4 cut(s) 67, 95, 109, 424
Hpy8I GTNNAC 1 cut(s) 331
Hpy99I CGWCG 3 cut(s) 175, 237, 366
HpyAV CCTTC 3 cut(s) 195, 248, 619
HpyCH4IV ACGT 4 cut(s) 44, 260, 516, 597
HpyCH4V TGCA 2 cut(s) 611, 693
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 205, 519
HpyF3I CTNAG 2 cut(s) 335, 394
HpySE526I ACGT 4 cut(s) 44, 260, 516, 597
Hsp92I GRCGYC 2 cut(s) 208, 235
Hsp92II CATG 8 cut(s) 70, 151, 562, 586, 611, 634, 640, 697
HspAI GCGC 3 cut(s) 115, 224, 448
Kzo9I GATC 2 cut(s) 59, 358
LmnI GCTCC 2 cut(s) 196, 301
LpnPI CCDG 8 cut(s) 18, 177, 202, 255, 305, 493, 537, 604
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 2 cut(s) 60, 620
MaeI CTAG 2 cut(s) 95, 273
MaeII ACGT 4 cut(s) 44, 260, 516, 597
MaeIII GTNAC 2 cut(s) 338, 397
MalI GATC 2 cut(s) 61, 360
MbiI CCGCTC 1 cut(s) 17
MboI GATC 2 cut(s) 59, 358
MboII GAAGA 3 cut(s) 308, 612, 658
MhlI GDGCHC 2 cut(s) 40, 201
MlsI TGGCCA 1 cut(s) 635
MluCI AATT 3 cut(s) 98, 463, 530
MluNI TGGCCA 1 cut(s) 635
MmeI TCCRAC 3 cut(s) 243, 344, 639
Mox20I TGGCCA 1 cut(s) 635
Mph1103I ATGCAT 1 cut(s) 613
MscI TGGCCA 1 cut(s) 635
MseI TTAA 3 cut(s) 101, 246, 306
MslI CAYNNNNRTG 2 cut(s) 635, 641
Msp20I TGGCCA 1 cut(s) 635
MspI CCGG 6 cut(s) 5, 164, 242, 292, 524, 591
MspR9I CCNGG 4 cut(s) 292, 293, 524, 591
MvnI CGCG 3 cut(s) 117, 170, 450
MwoI GCNNNNNNNGC 3 cut(s) 173, 205, 519
NciI CCSGG 4 cut(s) 292, 293, 524, 591
NcoI CCATGG 2 cut(s) 630, 636
NdeII GATC 2 cut(s) 59, 358
NlaIII CATG 8 cut(s) 70, 151, 562, 586, 611, 634, 640, 697
NlaIV GGNNCC 1 cut(s) 198
NmeAIII GCCGAG 2 cut(s) 29, 498
NmuCI GTSAC 1 cut(s) 338
NsbI TGCGCA 1 cut(s) 225
NsiI ATGCAT 1 cut(s) 613
NspI RCATGY 1 cut(s) 586
NspV TTCGAA 1 cut(s) 623
PaeI GCATGC 1 cut(s) 586
PaeR7I CTCGAG 1 cut(s) 347
PagI TCATGA 1 cut(s) 66
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 2 cut(s) 143, 481
PfoI TCCNGGA 1 cut(s) 589
PkrI GCNGC 2 cut(s) 169, 228
Ple19I CGATCG 1 cut(s) 62
PshAI GACNNNNGTC 1 cut(s) 336
Psp1406I AACGTT 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 3 cut(s) 161, 331, 521
PspXI VCTCGAGB 1 cut(s) 347
PvuI CGATCG 1 cut(s) 62
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
RseI CAYNNNNRTG 2 cut(s) 635, 641
SaqAI TTAA 3 cut(s) 101, 246, 306
SatI GCNGC 2 cut(s) 168, 227
Sau3AI GATC 2 cut(s) 59, 358
Sau96I GGNCC 3 cut(s) 161, 331, 521
ScrFI CCNGG 4 cut(s) 292, 293, 524, 591
SduI GDGCHC 2 cut(s) 40, 201
SetI ASST 9 cut(s) 47, 263, 306, 336, 345, 479, 512, 519, 600
SfaNI GCATC 2 cut(s) 60, 620
Sfr274I CTCGAG 1 cut(s) 347
SfuI TTCGAA 1 cut(s) 623
SinI GGWCC 2 cut(s) 161, 331
SlaI CTCGAG 1 cut(s) 347
SmaI CCCGGG 1 cut(s) 293
SmiMI CAYNNNNRTG 2 cut(s) 635, 641
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SphI GCATGC 1 cut(s) 586
Sse9I AATT 3 cut(s) 98, 463, 530
SsiI CCGC 3 cut(s) 15, 137, 168
SspMI CTAG 2 cut(s) 95, 273
StyD4I CCNGG 4 cut(s) 290, 291, 522, 589
StyI CCWWGG 2 cut(s) 630, 636
TaiI ACGT 4 cut(s) 47, 263, 519, 600
TaqI TCGA 6 cut(s) 31, 232, 348, 423, 534, 623
TaqII GACCGA 1 cut(s) 52
TasI AATT 3 cut(s) 98, 463, 530
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 2 cut(s) 143, 481
Tru1I TTAA 3 cut(s) 101, 246, 306
Tru9I TTAA 3 cut(s) 101, 246, 306
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 7 cut(s) 332, 458, 543, 659, 677, 689, 714
TspGWI ACGGA 1 cut(s) 209
TspMI CCCGGG 1 cut(s) 291
VpaK11BI GGWCC 2 cut(s) 161, 331
XagI CCTNNNNNAGG 1 cut(s) 347
XapI RAATTY 2 cut(s) 463, 530
XbaI TCTAGA 1 cut(s) 94
XceI RCATGY 1 cut(s) 586
XhoI CTCGAG 1 cut(s) 347
XmaI CCCGGG 1 cut(s) 291
XspI CTAG 2 cut(s) 95, 273
Zsp2I ATGCAT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.