Rroxscaffold_3G00235510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000480
Physical Location & Seq
Forward (+)
22536235 .. 22540105
3871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00235510.1

Sequence Viewer

Length: 393 bp
ATGAAGAACTCTGACGTGTTGAGAGTGTGTACGGAGGACTTAATGGAAGAAGATTTAGGCGCCAAACTCACCGTTTGGGTGCTTAAAGAATTCCAGCTTACAAGGACAAGAGAAAATATCGTTGACTTAGATCGGGTGTCGATTTCCGCAATTTCCGCCTGCGCCGACATTTTTTCTGTAAAGGTATTCCGAGTGATGCTCTCGTACTCTCAACCCACTATCTCCAGTTCCTTAGGTTGCCGCTTCACCCTTTATTTCAAATCTTGGCGGATATTGGGTTTGCACCCAATGCATTTCAACCGAAATTCGTATATGCTCCTAGCCGGGTTATTAATCATGGGGAAAAAGTGGGAAGTGTCGCTTGGGATCAGCGACTTCCTTTTTGTGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.91

Weight (kDa)

8.5

Isoelectric Point (pI)

31.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AciI CCGC 4 cut(s) 147, 156, 241, 268
AclWI GGATC 1 cut(s) 374
AcsI RAATTY 2 cut(s) 89, 304
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 2 cut(s) 31, 206
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 2 cut(s) 259, 298
AjiI CACGTC 1 cut(s) 16
AjuI GAANNNNNNNTTGG 2 cut(s) 345, 377
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
AlwI GGATC 1 cut(s) 374
ApoI RAATTY 2 cut(s) 89, 304
ArsI GACNNNNNNTTYG 1 cut(s) 365
AseI ATTAAT 1 cut(s) 332
AspLEI GCGC 2 cut(s) 62, 164
AsuC2I CCSGG 1 cut(s) 325
AsuHPI GGTGA 2 cut(s) 61, 238
AxyI CCTNAGG 1 cut(s) 232
BanI GGYRCC 1 cut(s) 59
BcnI CCSGG 1 cut(s) 325
BfaI CTAG 1 cut(s) 320
BfoI RGCGCY 1 cut(s) 63
BisI GCNGC 1 cut(s) 241
BlsI GCNGC 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 325
BmgBI CACGTC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 325
BmsI GCATC 1 cut(s) 186
BplI GAGNNNNNCTC 2 cut(s) 183, 215
BpmI CTGGAG 1 cut(s) 208
BpuMI CCSGG 1 cut(s) 325
BsaHI GRCGYC 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 225
Bse21I CCTNAGG 1 cut(s) 232
BseNI ACTGG 1 cut(s) 225
BshNI GGYRCC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 324
Bsp143I GATC 2 cut(s) 130, 366
BspACI CCGC 4 cut(s) 147, 156, 241, 268
BspLI GGNNCC 1 cut(s) 61
BspPI GGATC 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 59
BsrI ACTGG 1 cut(s) 225
BssMI GATC 2 cut(s) 130, 366
BssNI GRCGYC 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 73
BstACI GRCGYC 1 cut(s) 60
BstAPI GCANNNNNTGC 1 cut(s) 289
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 2 cut(s) 127, 232
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 2 cut(s) 62, 164
BstKTI GATC 2 cut(s) 133, 369
BstMBI GATC 2 cut(s) 130, 366
BstMWI GCNNNNNNNGC 2 cut(s) 155, 289
BstSCI CCNGG 1 cut(s) 323
Bsu36I CCTNAGG 1 cut(s) 232
BtrI CACGTC 1 cut(s) 16
Cac8I GCNNGC 1 cut(s) 160
CfoI GCGC 2 cut(s) 62, 164
Csp6I GTAC 2 cut(s) 30, 205
CviAII CATG 1 cut(s) 337
CviJI RGCY 2 cut(s) 97, 323
CviKI_1 RGCY 2 cut(s) 97, 323
CviQI GTAC 2 cut(s) 30, 205
DdeI CTNAG 2 cut(s) 127, 232
DinI GGCGCC 1 cut(s) 61
DpnI GATC 2 cut(s) 132, 368
DpnII GATC 2 cut(s) 130, 366
EciI GGCGGA 2 cut(s) 145, 283
Eco81I CCTNAGG 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 89
EcoT22I ATGCAT 1 cut(s) 294
EgeI GGCGCC 1 cut(s) 61
EheI GGCGCC 1 cut(s) 61
FaeI CATG 1 cut(s) 340
FaiI YATR 3 cut(s) 312, 314, 338
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FatI CATG 1 cut(s) 336
Fnu4HI GCNGC 1 cut(s) 241
Fsp4HI GCNGC 1 cut(s) 241
FspBI CTAG 1 cut(s) 320
GlaI GCGC 2 cut(s) 61, 163
GluI GCNGC 1 cut(s) 241
GsuI CTGGAG 1 cut(s) 208
HaeII RGCGCY 1 cut(s) 63
HapII CCGG 1 cut(s) 324
HhaI GCGC 2 cut(s) 62, 164
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 1 cut(s) 340
Hin6I GCGC 2 cut(s) 60, 162
HinP1I GCGC 2 cut(s) 60, 162
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HpaII CCGG 1 cut(s) 324
HphI GGTGA 2 cut(s) 61, 238
Hpy166II GTNNAC 2 cut(s) 30, 124
Hpy188I TCNGA 2 cut(s) 13, 191
Hpy8I GTNNAC 2 cut(s) 30, 124
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 2 cut(s) 283, 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 289
HpyF3I CTNAG 2 cut(s) 127, 232
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 1 cut(s) 340
HspAI GCGC 2 cut(s) 60, 162
KasI GGCGCC 1 cut(s) 59
Kzo9I GATC 2 cut(s) 130, 366
LmnI GCTCC 1 cut(s) 321
LpnPI CCDG 4 cut(s) 107, 172, 238, 337
LweI GCATC 1 cut(s) 186
MaeI CTAG 1 cut(s) 320
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 385
MalI GATC 2 cut(s) 132, 368
MboI GATC 2 cut(s) 130, 366
MboII GAAGA 3 cut(s) 16, 59, 62
MluCI AATT 3 cut(s) 89, 150, 304
Mly113I GGCGCC 1 cut(s) 60
MnlI CCTC 1 cut(s) 28
Mph1103I ATGCAT 1 cut(s) 294
MseI TTAA 3 cut(s) 41, 84, 332
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 1 cut(s) 325
MwoI GCNNNNNNNGC 2 cut(s) 155, 289
NarI GGCGCC 1 cut(s) 60
NciI CCSGG 1 cut(s) 325
NdeII GATC 2 cut(s) 130, 366
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 385
NsiI ATGCAT 1 cut(s) 294
PkrI GCNGC 1 cut(s) 242
PluTI GGCGCC 1 cut(s) 63
PshBI ATTAAT 1 cut(s) 332
PspN4I GGNNCC 1 cut(s) 61
RsaI GTAC 2 cut(s) 31, 206
RsaNI GTAC 2 cut(s) 30, 205
SaqAI TTAA 3 cut(s) 41, 84, 332
SatI GCNGC 1 cut(s) 241
Sau3AI GATC 2 cut(s) 130, 366
ScrFI CCNGG 1 cut(s) 325
SetI ASST 5 cut(s) 18, 99, 186, 238, 392
SfaNI GCATC 1 cut(s) 186
SfoI GGCGCC 1 cut(s) 61
Sse9I AATT 3 cut(s) 89, 150, 304
SsiI CCGC 4 cut(s) 147, 156, 241, 268
SspDI GGCGCC 1 cut(s) 59
SspMI CTAG 1 cut(s) 320
StyD4I CCNGG 1 cut(s) 323
TaaI ACNGT 1 cut(s) 73
TaiI ACGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 140
TasI AATT 3 cut(s) 89, 150, 304
TauI GCSGC 1 cut(s) 243
Tru1I TTAA 3 cut(s) 41, 84, 332
Tru9I TTAA 3 cut(s) 41, 84, 332
TseFI GTSAC 1 cut(s) 385
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 47
VspI ATTAAT 1 cut(s) 332
XapI RAATTY 2 cut(s) 89, 304
XspI CTAG 1 cut(s) 320
Zsp2I ATGCAT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.