Rroxscaffold_2G00117760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000480
Physical Location & Seq
Reverse (-)
48394591 .. 48395190
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00117760.1

Sequence Viewer

Length: 600 bp
ATGGTTCGCATCAAGCACACCGATTCAGCAAAAATCCAAAAGAAAAACTCCGAGAGAGTTGAGGAGACCGTGCCATGGAAGCCGACGGATCGCGACATCGAAAAGTACATCGAGGAGTACTCCATACCGAAATCGTTAAGCTTTCACCGTCCTCGCGGTCGCCGATATTCACACCGGCGAAAACGTGCCGCTGGTGCCTTGATTTTATCTCCTCGGCACCTAAGATTTATCGGGTTTCCAATACACTCCGTCTTCCAACTCATGTGGGGTGTGCTCGGTTTGCACCCACTTCAACTTAATCCGCATGCTTATCCGCTTCGTCGCATTTTTAATCATGGGTTGGAAGTGAGGGGTCTTGGGACTTTCGGATTTTCTTTATCCGTACAATTGTGCCGAATTGGCAAACTCGTATATTTTAACTTTACTCCATACCCGAAGATGAAGGTGTTCGGAGGTTTATCCAATAACTATCGAGGATGGAAGTCCGGGGCCTTGTCGATCACCGGTGGATGGCGCTCCTCCGAGTTGGATCTTTTGCCCCCGAGAGCGTTCGCAGACTACCTTGGTACGTATCTTAACCCTTTTTCTCCCCGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

23.0

Weight (kDa)

10.55

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 194, 216
AccII CGCG 2 cut(s) 93, 156
AciI CCGC 4 cut(s) 156, 189, 302, 314
AclWI GGATC 2 cut(s) 96, 537
AfaI GTAC 5 cut(s) 107, 119, 384, 568, 595
AfiI CCNNNNNNNGG 2 cut(s) 75, 510
AgeI ACCGGT 1 cut(s) 503
AgsI TTSAA 1 cut(s) 293
AluBI AGCT 1 cut(s) 141
AluI AGCT 1 cut(s) 141
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 2 cut(s) 96, 537
Ama87I CYCGRG 1 cut(s) 541
AoxI GGCC 1 cut(s) 489
AsiGI ACCGGT 1 cut(s) 503
Asp700I GAANNNNTTC 1 cut(s) 446
AspLEI GCGC 1 cut(s) 516
AspS9I GGNCC 1 cut(s) 489
AsuC2I CCSGG 1 cut(s) 487
AsuHPI GGTGA 2 cut(s) 137, 493
AvaI CYCGRG 1 cut(s) 541
BanI GGYRCC 2 cut(s) 194, 216
BbsI GAAGAC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 276
BccI CCATC 2 cut(s) 471, 504
BcnI CCSGG 1 cut(s) 487
BcoDI GTCTC 1 cut(s) 59
BfoI RGCGCY 1 cut(s) 517
BglI GCCNNNNNGGC 1 cut(s) 399
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
BmcAI AGTACT 1 cut(s) 119
Bme1390I CCNGG 1 cut(s) 487
BmeT110I CYCGRG 1 cut(s) 541
BmgT120I GGNCC 1 cut(s) 489
BmiI GGNNCC 3 cut(s) 196, 218, 490
BmrFI CCNGG 1 cut(s) 487
BmsI GCATC 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 244
BplI GAGNNNNNCTC 2 cut(s) 104, 136
BpuMI CCSGG 1 cut(s) 487
BsaAI YACGTR 2 cut(s) 570, 597
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 4 cut(s) 74, 212, 486, 562
BsaWI WCCGGW 1 cut(s) 503
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 510
Bse118I RCCGGY 2 cut(s) 174, 503
BseDI CCNNGG 4 cut(s) 74, 212, 486, 562
BseGI GGATG 2 cut(s) 482, 515
BseLI CCNNNNNNNGG 2 cut(s) 75, 510
BseRI GAGGAG 4 cut(s) 77, 128, 201, 508
Bsh1236I CGCG 2 cut(s) 93, 156
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 1 cut(s) 491
BshNI GGYRCC 2 cut(s) 194, 216
BshTI ACCGGT 1 cut(s) 503
BsiEI CGRYCG 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 541
BsiSI CCGG 3 cut(s) 175, 486, 504
BsiWI CGTACG 1 cut(s) 593
BslFI GGGAC 1 cut(s) 373
BslI CCNNNNNNNGG 2 cut(s) 75, 510
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 373
BsnI GGCC 1 cut(s) 491
Bso31I GGTCTC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 541
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 3 cut(s) 88, 498, 529
Bsp19I CCATGG 1 cut(s) 74
Bsp68I TCGCGA 1 cut(s) 93
BspACI CCGC 4 cut(s) 156, 189, 302, 314
BspANI GGCC 1 cut(s) 491
BspFNI CGCG 2 cut(s) 93, 156
BspLI GGNNCC 3 cut(s) 196, 218, 490
BspPI GGATC 2 cut(s) 96, 537
BspT107I GGYRCC 2 cut(s) 194, 216
BspTNI GGTCTC 1 cut(s) 59
BsrFI RCCGGY 2 cut(s) 174, 503
BssAI RCCGGY 2 cut(s) 174, 503
BssECI CCNNGG 4 cut(s) 74, 212, 486, 562
BssMI GATC 3 cut(s) 88, 498, 529
BssT1I CCWWGG 2 cut(s) 74, 562
Bst4CI ACNGT 2 cut(s) 70, 149
BstBAI YACGTR 2 cut(s) 570, 597
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 221
BstDSI CCRYGG 1 cut(s) 74
BstF5I GGATG 2 cut(s) 482, 515
BstFNI CGCG 2 cut(s) 93, 156
BstH2I RGCGCY 1 cut(s) 517
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 3 cut(s) 91, 501, 532
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 3 cut(s) 88, 498, 529
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 4 cut(s) 79, 194, 280, 399
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 485
BstSNI TACGTA 2 cut(s) 570, 597
BstUI CGCG 2 cut(s) 93, 156
BstV2I GAAGAC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuRI GGCC 1 cut(s) 491
BtgI CCRYGG 1 cut(s) 74
BtsCI GGATG 2 cut(s) 482, 515
BtuMI TCGCGA 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 306
CfoI GCGC 1 cut(s) 516
Cfr10I RCCGGY 2 cut(s) 174, 503
Cfr13I GGNCC 1 cut(s) 489
Csp6I GTAC 5 cut(s) 106, 118, 383, 567, 594
CspAI ACCGGT 1 cut(s) 503
CspCI CAANNNNNGTGG 2 cut(s) 245, 280
CviAII CATG 4 cut(s) 75, 262, 305, 335
CviJI RGCY 3 cut(s) 82, 141, 491
CviKI_1 RGCY 3 cut(s) 82, 141, 491
CviQI GTAC 5 cut(s) 106, 118, 383, 567, 594
DdeI CTNAG 1 cut(s) 221
DpnI GATC 3 cut(s) 90, 500, 531
DpnII GATC 3 cut(s) 88, 498, 529
Eco105I TACGTA 2 cut(s) 570, 597
Eco130I CCWWGG 2 cut(s) 74, 562
Eco31I GGTCTC 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 541
EcoO109I RGGNCCY 1 cut(s) 489
EcoT14I CCWWGG 2 cut(s) 74, 562
ErhI CCWWGG 2 cut(s) 74, 562
FaeI CATG 4 cut(s) 78, 265, 308, 338
FaiI YATR 7 cut(s) 76, 125, 263, 306, 336, 412, 430
FaqI GGGAC 1 cut(s) 373
FatI CATG 4 cut(s) 74, 261, 304, 334
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 2 cut(s) 489, 522
Fsp4HI GCNGC 1 cut(s) 189
GlaI GCGC 1 cut(s) 515
GluI GCNGC 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 517
HaeIII GGCC 1 cut(s) 491
HapII CCGG 3 cut(s) 175, 486, 504
HhaI GCGC 1 cut(s) 516
Hin1II CATG 4 cut(s) 78, 265, 308, 338
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HindIII AAGCTT 1 cut(s) 139
HinfI GANTC 1 cut(s) 23
HpaII CCGG 3 cut(s) 175, 486, 504
HphI GGTGA 2 cut(s) 137, 493
Hpy188I TCNGA 4 cut(s) 52, 368, 452, 523
Hpy188III TCNNGA 1 cut(s) 92
Hpy99I CGWCG 2 cut(s) 88, 324
HpyAV CCTTC 1 cut(s) 436
HpyCH4III ACNGT 2 cut(s) 70, 149
HpyCH4IV ACGT 3 cut(s) 184, 569, 596
HpyCH4V TGCA 1 cut(s) 283
HpyF10VI GCNNNNNNNGC 4 cut(s) 79, 194, 280, 399
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 3 cut(s) 184, 569, 596
Hsp92II CATG 4 cut(s) 78, 265, 308, 338
HspAI GCGC 1 cut(s) 514
Kzo9I GATC 3 cut(s) 88, 498, 529
LmnI GCTCC 1 cut(s) 521
LpnPI CCDG 4 cut(s) 177, 188, 499, 517
LweI GCATC 1 cut(s) 18
MaeII ACGT 3 cut(s) 184, 569, 596
MalI GATC 3 cut(s) 90, 500, 531
MboI GATC 3 cut(s) 88, 498, 529
MboII GAAGA 2 cut(s) 244, 448
MfeI CAATTG 1 cut(s) 386
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 2 cut(s) 386, 396
MmeI TCCRAC 3 cut(s) 280, 321, 507
MnlI CCTC 8 cut(s) 55, 106, 162, 222, 342, 446, 467, 529
MroXI GAANNNNTTC 1 cut(s) 446
MseI TTAA 5 cut(s) 137, 297, 330, 417, 576
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 3 cut(s) 175, 486, 504
MspR9I CCNGG 1 cut(s) 487
MunI CAATTG 1 cut(s) 386
MvnI CGCG 2 cut(s) 93, 156
MwoI GCNNNNNNNGC 4 cut(s) 79, 194, 280, 399
NciI CCSGG 1 cut(s) 487
NcoI CCATGG 1 cut(s) 74
NdeII GATC 3 cut(s) 88, 498, 529
NlaIII CATG 4 cut(s) 78, 265, 308, 338
NlaIV GGNNCC 3 cut(s) 196, 218, 490
NmeAIII GCCGAG 1 cut(s) 193
NruI TCGCGA 1 cut(s) 93
NspI RCATGY 1 cut(s) 308
PaeI GCATGC 1 cut(s) 308
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 446
PfeI GAWTC 1 cut(s) 23
Pfl23II CGTACG 1 cut(s) 593
PinAI ACCGGT 1 cut(s) 503
PkrI GCNGC 1 cut(s) 190
Ppu21I YACGTR 2 cut(s) 570, 597
PspLI CGTACG 1 cut(s) 593
PspN4I GGNNCC 3 cut(s) 196, 218, 490
PspPI GGNCC 1 cut(s) 489
PsuI RGATCY 1 cut(s) 529
RruI TCGCGA 1 cut(s) 93
RsaI GTAC 5 cut(s) 107, 119, 384, 568, 595
RsaNI GTAC 5 cut(s) 106, 118, 383, 567, 594
SaqAI TTAA 5 cut(s) 137, 297, 330, 417, 576
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 3 cut(s) 88, 498, 529
Sau96I GGNCC 1 cut(s) 489
ScaI AGTACT 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 487
SduI GDGCHC 1 cut(s) 276
SetI ASST 8 cut(s) 143, 187, 222, 447, 457, 564, 572, 599
SfaNI GCATC 1 cut(s) 18
SgrAI CRCCGGYG 2 cut(s) 174, 503
SnaBI TACGTA 2 cut(s) 570, 597
SphI GCATGC 1 cut(s) 308
Sse9I AATT 2 cut(s) 386, 396
SsiI CCGC 4 cut(s) 156, 189, 302, 314
StyD4I CCNGG 1 cut(s) 485
StyI CCWWGG 2 cut(s) 74, 562
TaaI ACNGT 2 cut(s) 70, 149
TaiI ACGT 3 cut(s) 187, 572, 599
TaqI TCGA 4 cut(s) 99, 111, 472, 497
TasI AATT 2 cut(s) 386, 396
TatI WGTACW 2 cut(s) 105, 117
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 5 cut(s) 137, 297, 330, 417, 576
Tru9I TTAA 5 cut(s) 137, 297, 330, 417, 576
TspDTI ATGAA 1 cut(s) 455
TspGWI ACGGA 3 cut(s) 101, 238, 370
XceI RCATGY 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 446
ZrmI AGTACT 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.