Rmu_sc0004192.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004192.1
OG0000480
Physical Location & Seq
Forward (+)
58172 .. 64265
6094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004192.1_g000015.1.cds

Sequence Viewer

Length: 1116 bp
atggtccataatttatggatatcaagagttcaagacgacaaggcatgggcatatgacagacataatttgtgggactgcactgcagtcactgcatgcttggcagcgaaagttcagaagagaagtccagaagaagttaaggagtcggtgtcttggaacccgacggatcgtgacaacgaaaagtacatcaagggcgaatggaagtccagggccttgttgatcactagtgggttgtactcccttgagctggatcttttgcccctgagagcttttgcagatgaccttgcttacaagctctctcaggccaaagtcaatcttcccctcagtcatattgtgtggttagaaagtcatcttgtgcagctagagtggtttccttcccagtttgtaactcatgagaatcttctcgaagctgtatccaaccgcccattagctttatttggcagttaccaagaatacattgatcatgcactttctgggaaggaactagcgattcgtgttgtcaaggacacctttcgtttgatagttccttgctcggctgtggtcaccgtcgagggggatgaagcaagagaaagcctcgaaggaggtgacttgaattcacatttacgcaagcgagggtcccagggaaatgtttcggatgaaggaatttcgtcttgttatgtaagggagctaccccaatcagttcctcctcctcagaaggtgagaaagcgtaaggtcggagatcttgtcgctagcgatggcccgtctcattcttctcaaggggaattggttcgagacatgtcgccgcattcttcgctgcggagggttcgttttactccgccacctgtgccggataccatctctcatccgtcctctcgaagcgcccctacgtcctcggcgaccccatctgtcatgatgcctcctcctccactcaaagttctagaattaagtttcaggaaccgcgacaactcctatgttttggtaggagaatccctgttcgctaatggtttggccgcgtcagcggccttcttggtgtcccaccacttcctgcgctgccttgacttttttcaatcgaagcaacaacaacagttggaccaggcgagtcgccaactcaaatccctggaagaggagcttaatgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

371

Amino Acids

41.6

Weight (kDa)

6.33

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 936, 989
AciI CCGC 7 cut(s) 418, 779, 793, 812, 934, 987, 995
AclWI GGATC 2 cut(s) 171, 255
AcoI YGGCCR 1 cut(s) 984
AcsI RAATTY 2 cut(s) 589, 639
AfaI GTAC 2 cut(s) 182, 233
AfiI CCNNNNNNNGG 3 cut(s) 244, 549, 1099
AflIII ACRYGT 1 cut(s) 771
AgsI TTSAA 3 cut(s) 32, 589, 1043
AhlI ACTAGT 1 cut(s) 221
AjnI CCWGG 4 cut(s) 203, 615, 1068, 1092
AluBI AGCT 8 cut(s) 244, 266, 292, 358, 407, 428, 664, 1105
AluI AGCT 8 cut(s) 244, 266, 292, 358, 407, 428, 664, 1105
Alw26I GTCTC 2 cut(s) 744, 762
AlwI GGATC 2 cut(s) 171, 255
AlwNI CAGNNNCTG 1 cut(s) 89
AoxI GGCC 5 cut(s) 207, 300, 733, 984, 996
ApeKI GCWGC 4 cut(s) 101, 355, 790, 1026
ApoI RAATTY 2 cut(s) 589, 639
Asp700I GAANNNNTTC 2 cut(s) 625, 762
AspLEI GCGC 2 cut(s) 857, 1026
AspS9I GGNCC 5 cut(s) 4, 207, 612, 734, 1066
AsuHPI GGTGA 3 cut(s) 532, 593, 706
AsuNHI GCTAGC 1 cut(s) 725
AvaII GGWCC 3 cut(s) 4, 612, 1066
BarI GAAGNNNNNNTAC 2 cut(s) 844, 876
BbvI GCAGC 4 cut(s) 113, 367, 777, 1013
BccI CCATC 3 cut(s) 725, 839, 886
BciT130I CCWGG 4 cut(s) 205, 617, 1070, 1094
BciVI GTATCC 2 cut(s) 421, 820
BclI TGATCA 2 cut(s) 216, 457
BcoDI GTCTC 2 cut(s) 744, 762
BcuI ACTAGT 1 cut(s) 221
BfaI CTAG 5 cut(s) 222, 359, 482, 726, 914
BfmI CTRYAG 1 cut(s) 81
BfoI RGCGCY 1 cut(s) 858
BfuI GTATCC 2 cut(s) 421, 820
BglII AGATCT 1 cut(s) 715
BisI GCNGC 7 cut(s) 102, 356, 779, 791, 987, 996, 1027
BlsI GCNGC 7 cut(s) 103, 357, 780, 792, 988, 997, 1028
Bme1390I CCNGG 4 cut(s) 205, 617, 1070, 1094
Bme18I GGWCC 3 cut(s) 4, 612, 1066
BmgT120I GGNCC 5 cut(s) 4, 207, 612, 734, 1066
BmiI GGNNCC 4 cut(s) 155, 613, 614, 932
BmrFI CCNGG 4 cut(s) 205, 617, 1070, 1094
BmrI ACTGGG 1 cut(s) 370
BmsI GCATC 1 cut(s) 879
BmtI GCTAGC 1 cut(s) 729
BmuI ACTGGG 1 cut(s) 370
BplI GAGNNNNNCTC 2 cut(s) 555, 587
BpuEI CTTGAG 2 cut(s) 260, 735
BsaJI CCNNGG 5 cut(s) 204, 615, 616, 867, 1092
BsaXI ACNNNNNCTCC 6 cut(s) 131, 161, 705, 735, 787, 817
Bsc4I CCNNNNNNNGG 3 cut(s) 244, 549, 1099
Bse1I ACTGG 1 cut(s) 376
BseBI CCWGG 4 cut(s) 205, 617, 1070, 1094
BseDI CCNNGG 5 cut(s) 204, 615, 616, 867, 1092
BseGI GGATG 3 cut(s) 559, 637, 838
BseLI CCNNNNNNNGG 3 cut(s) 244, 549, 1099
BseMII CTCAG 4 cut(s) 251, 311, 334, 701
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 5 cut(s) 672, 675, 885, 888, 1115
BseXI GCAGC 4 cut(s) 113, 367, 777, 1013
BsgI GTGCAG 2 cut(s) 61, 374
Bsh1236I CGCG 2 cut(s) 936, 989
BshFI GGCC 5 cut(s) 209, 302, 735, 986, 998
BsiSI CCGG 1 cut(s) 824
BslFI GGGAC 3 cut(s) 86, 598, 994
BslI CCNNNNNNNGG 3 cut(s) 244, 549, 1099
BsmAI GTCTC 2 cut(s) 744, 762
BsmBI CGTCTC 1 cut(s) 744
BsmFI GGGAC 3 cut(s) 86, 598, 994
BsmI GAATGC 1 cut(s) 781
BsnI GGCC 5 cut(s) 209, 302, 735, 986, 998
Bsp143I GATC 5 cut(s) 163, 216, 247, 457, 715
BspACI CCGC 7 cut(s) 418, 779, 793, 812, 934, 987, 995
BspANI GGCC 5 cut(s) 209, 302, 735, 986, 998
BspCNI CTCAG 4 cut(s) 252, 310, 333, 700
BspFNI CGCG 2 cut(s) 936, 989
BspHI TCATGA 2 cut(s) 388, 885
BspLI GGNNCC 4 cut(s) 155, 613, 614, 932
BspMAI CTGCAG 1 cut(s) 85
BspOI GCTAGC 1 cut(s) 729
BspPI GGATC 2 cut(s) 171, 255
BsrI ACTGG 1 cut(s) 376
BssECI CCNNGG 5 cut(s) 204, 615, 616, 867, 1092
BssMI GATC 5 cut(s) 163, 216, 247, 457, 715
Bst2UI CCWGG 4 cut(s) 205, 617, 1070, 1094
Bst4CI ACNGT 2 cut(s) 544, 1062
Bst6I CTCTTC 2 cut(s) 110, 1092
BstAPI GCANNNNNTGC 1 cut(s) 89
BstC8I GCNNGC 3 cut(s) 94, 605, 727
BstDEI CTNAG 4 cut(s) 260, 297, 320, 687
BstEII GGTNACC 1 cut(s) 538
BstENI CCTNNNNNAGG 1 cut(s) 1097
BstF5I GGATG 3 cut(s) 559, 637, 838
BstFNI CGCG 2 cut(s) 936, 989
BstH2I RGCGCY 1 cut(s) 858
BstHHI GCGC 2 cut(s) 857, 1026
BstKTI GATC 5 cut(s) 166, 219, 250, 460, 718
BstMAI GTCTC 2 cut(s) 744, 762
BstMBI GATC 5 cut(s) 163, 216, 247, 457, 715
BstMWI GCNNNNNNNGC 6 cut(s) 89, 98, 787, 820, 992, 995
BstNI CCWGG 4 cut(s) 205, 617, 1070, 1094
BstNSI RCATGY 2 cut(s) 96, 775
BstPI GGTNACC 1 cut(s) 538
BstSCI CCNGG 4 cut(s) 203, 615, 1068, 1092
BstSFI CTRYAG 1 cut(s) 81
BstUI CGCG 2 cut(s) 936, 989
BstV1I GCAGC 4 cut(s) 113, 367, 777, 1013
BstX2I RGATCY 2 cut(s) 247, 715
BstYI RGATCY 2 cut(s) 247, 715
BsuI GTATCC 2 cut(s) 421, 820
BsuRI GGCC 5 cut(s) 209, 302, 735, 986, 998
BtgZI GCGATG 1 cut(s) 744
BtsCI GGATG 3 cut(s) 559, 637, 838
BtsI GCAGTG 2 cut(s) 78, 87
BtsIMutI CAGTG 2 cut(s) 78, 87
Cac8I GCNNGC 3 cut(s) 94, 605, 727
CaiI CAGNNNCTG 1 cut(s) 89
CciI TCATGA 2 cut(s) 388, 885
CfoI GCGC 2 cut(s) 857, 1026
Cfr13I GGNCC 5 cut(s) 4, 207, 612, 734, 1066
CseI GACGC 1 cut(s) 978
Csp6I GTAC 2 cut(s) 181, 232
CviAII CATG 6 cut(s) 45, 93, 389, 461, 772, 886
CviQI GTAC 2 cut(s) 181, 232
DdeI CTNAG 4 cut(s) 260, 297, 320, 687
DpnI GATC 5 cut(s) 165, 218, 249, 459, 717
DpnII GATC 5 cut(s) 163, 216, 247, 457, 715
EaeI YGGCCR 1 cut(s) 984
Eam1104I CTCTTC 2 cut(s) 110, 1092
EarI CTCTTC 2 cut(s) 110, 1092
EciI GGCGGA 1 cut(s) 801
Eco32I GATATC 1 cut(s) 21
Eco47I GGWCC 3 cut(s) 4, 612, 1066
Eco91I GGTNACC 1 cut(s) 538
EcoNI CCTNNNNNAGG 1 cut(s) 1097
EcoO109I RGGNCCY 2 cut(s) 207, 612
EcoO65I GGTNACC 1 cut(s) 538
EcoRI GAATTC 1 cut(s) 589
EcoRII CCWGG 4 cut(s) 203, 615, 1068, 1092
EcoRV GATATC 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 744
FaeI CATG 6 cut(s) 48, 96, 392, 464, 775, 889
FalI AAGNNNNNCTT 5 cut(s) 297, 329, 491, 523, 1089
FaqI GGGAC 3 cut(s) 86, 598, 994
FatI CATG 6 cut(s) 44, 92, 388, 460, 771, 885
FauNDI CATATG 1 cut(s) 52
FbaI TGATCA 2 cut(s) 216, 457
Fnu4HI GCNGC 7 cut(s) 102, 356, 779, 791, 987, 996, 1027
FokI GGATG 3 cut(s) 566, 644, 825
Fsp4HI GCNGC 7 cut(s) 102, 356, 779, 791, 987, 996, 1027
FspBI CTAG 5 cut(s) 222, 359, 482, 726, 914
GlaI GCGC 2 cut(s) 856, 1025
GluI GCNGC 7 cut(s) 102, 356, 779, 791, 987, 996, 1027
HaeII RGCGCY 1 cut(s) 858
HaeIII GGCC 5 cut(s) 209, 302, 735, 986, 998
HapII CCGG 1 cut(s) 824
HgaI GACGC 1 cut(s) 978
HhaI GCGC 2 cut(s) 857, 1026
Hin1II CATG 6 cut(s) 48, 96, 392, 464, 775, 889
Hin6I GCGC 2 cut(s) 855, 1024
HinP1I GCGC 2 cut(s) 855, 1024
HinfI GANTC 5 cut(s) 140, 394, 487, 962, 1075
HpaII CCGG 1 cut(s) 824
HphI GGTGA 3 cut(s) 532, 593, 706
Hpy188I TCNGA 4 cut(s) 114, 631, 690, 713
Hpy99I CGWCG 2 cut(s) 163, 548
HpyAV CCTTC 6 cut(s) 381, 469, 569, 629, 685, 1009
HpyCH4III ACNGT 2 cut(s) 544, 1062
HpyCH4IV ACGT 1 cut(s) 863
HpyCH4V TGCA 6 cut(s) 78, 83, 92, 272, 355, 464
HpyF10VI GCNNNNNNNGC 6 cut(s) 89, 98, 787, 820, 992, 995
HpyF3I CTNAG 4 cut(s) 260, 297, 320, 687
HpySE526I ACGT 1 cut(s) 863
Hsp92II CATG 6 cut(s) 48, 96, 392, 464, 775, 889
HspAI GCGC 2 cut(s) 855, 1024
KflI GGGWCCC 1 cut(s) 612
Ksp22I TGATCA 2 cut(s) 216, 457
Kzo9I GATC 5 cut(s) 163, 216, 247, 457, 715
LmnI GCTCC 2 cut(s) 661, 1102
Lsp1109I GCAGC 4 cut(s) 113, 367, 777, 1013
LweI GCATC 1 cut(s) 879
MaeI CTAG 5 cut(s) 222, 359, 482, 726, 914
MaeII ACGT 1 cut(s) 863
MaeIII GTNAC 6 cut(s) 85, 167, 382, 440, 538, 581
MalI GATC 5 cut(s) 165, 218, 249, 459, 717
MboI GATC 5 cut(s) 163, 216, 247, 457, 715
MboII GAAGA 7 cut(s) 127, 140, 305, 389, 738, 777, 1109
MflI RGATCY 2 cut(s) 247, 715
MluCI AATT 6 cut(s) 10, 64, 589, 639, 758, 917
MlyI GAGTC 2 cut(s) 149, 1084
MmeI TCCRAC 3 cut(s) 438, 691, 1044
MroXI GAANNNNTTC 2 cut(s) 625, 762
MseI TTAA 3 cut(s) 135, 920, 1107
MspA1I CMGCKG 1 cut(s) 995
MspI CCGG 1 cut(s) 824
MspR9I CCNGG 4 cut(s) 205, 617, 1070, 1094
Mva1269I GAATGC 1 cut(s) 781
MvaI CCWGG 4 cut(s) 205, 617, 1070, 1094
MvnI CGCG 2 cut(s) 936, 989
MwoI GCNNNNNNNGC 6 cut(s) 89, 98, 787, 820, 992, 995
NdeI CATATG 1 cut(s) 52
NdeII GATC 5 cut(s) 163, 216, 247, 457, 715
NheI GCTAGC 1 cut(s) 725
NlaIII CATG 6 cut(s) 48, 96, 392, 464, 775, 889
NlaIV GGNNCC 4 cut(s) 155, 613, 614, 932
NmeAIII GCCGAG 2 cut(s) 509, 848
NmuCI GTSAC 4 cut(s) 85, 167, 538, 581
NspI RCATGY 2 cut(s) 96, 775
PaeI GCATGC 1 cut(s) 96
PagI TCATGA 2 cut(s) 388, 885
PasI CCCWGGG 1 cut(s) 616
PciI ACATGT 1 cut(s) 771
PcsI WCGNNNNNNNCGW 1 cut(s) 869
PctI GAATGC 1 cut(s) 781
PdmI GAANNNNTTC 2 cut(s) 625, 762
PfeI GAWTC 3 cut(s) 394, 487, 962
PkrI GCNGC 7 cut(s) 103, 357, 780, 792, 988, 997, 1028
PleI GAGTC 2 cut(s) 148, 1083
PpsI GAGTC 2 cut(s) 148, 1083
PpuMI RGGWCCY 1 cut(s) 612
PscI ACATGT 1 cut(s) 771
Psp5II RGGWCCY 1 cut(s) 612
Psp6I CCWGG 4 cut(s) 203, 615, 1068, 1092
PspEI GGTNACC 1 cut(s) 538
PspGI CCWGG 4 cut(s) 203, 615, 1068, 1092
PspN4I GGNNCC 4 cut(s) 155, 613, 614, 932
PspPI GGNCC 5 cut(s) 4, 207, 612, 734, 1066
PspPPI RGGWCCY 1 cut(s) 612
PstI CTGCAG 1 cut(s) 85
PstNI CAGNNNCTG 1 cut(s) 89
PsuI RGATCY 2 cut(s) 247, 715
RsaI GTAC 2 cut(s) 182, 233
RsaNI GTAC 2 cut(s) 181, 232
SaqAI TTAA 3 cut(s) 135, 920, 1107
SatI GCNGC 7 cut(s) 102, 356, 779, 791, 987, 996, 1027
Sau3AI GATC 5 cut(s) 163, 216, 247, 457, 715
Sau96I GGNCC 5 cut(s) 4, 207, 612, 734, 1066
SchI GAGTC 2 cut(s) 149, 1084
ScrFI CCNGG 4 cut(s) 205, 617, 1070, 1094
SfaNI GCATC 1 cut(s) 879
SfcI CTRYAG 1 cut(s) 81
SinI GGWCC 3 cut(s) 4, 612, 1066
SmlI CTYRAG 2 cut(s) 239, 750
SmoI CTYRAG 2 cut(s) 239, 750
SpeI ACTAGT 1 cut(s) 221
SphI GCATGC 1 cut(s) 96
Sse9I AATT 6 cut(s) 10, 64, 589, 639, 758, 917
SsiI CCGC 7 cut(s) 418, 779, 793, 812, 934, 987, 995
SspMI CTAG 5 cut(s) 222, 359, 482, 726, 914
StyD4I CCNGG 4 cut(s) 203, 615, 1068, 1092
TaaI ACNGT 2 cut(s) 544, 1062
TaiI ACGT 1 cut(s) 866
TaqI TCGA 6 cut(s) 402, 546, 573, 766, 850, 1046
TasI AATT 6 cut(s) 10, 64, 589, 639, 758, 917
TatI WGTACW 2 cut(s) 180, 231
TauI GCSGC 3 cut(s) 781, 989, 998
TfiI GAWTC 3 cut(s) 394, 487, 962
Tru1I TTAA 3 cut(s) 135, 920, 1107
Tru9I TTAA 3 cut(s) 135, 920, 1107
TscAI CASTG 2 cut(s) 85, 94
TseFI GTSAC 4 cut(s) 85, 167, 538, 581
TseI GCWGC 4 cut(s) 101, 355, 790, 1026
Tsp45I GTSAC 4 cut(s) 85, 167, 538, 581
TspDTI ATGAA 2 cut(s) 570, 648
TspGWI ACGGA 2 cut(s) 176, 831
TspRI CASTG 2 cut(s) 85, 94
VpaK11BI GGWCC 3 cut(s) 4, 612, 1066
XagI CCTNNNNNAGG 1 cut(s) 1097
XapI RAATTY 2 cut(s) 589, 639
XbaI TCTAGA 1 cut(s) 913
XceI RCATGY 2 cut(s) 96, 775
XmnI GAANNNNTTC 2 cut(s) 625, 762
XspI CTAG 5 cut(s) 222, 359, 482, 726, 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.