Rroxscaffold_4G00322430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000480
Physical Location & Seq
Forward (+)
52695182 .. 52696853
1672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00322430.1

Sequence Viewer

Length: 678 bp
ATGGGTAGGAATATTCCTGATGATGTCTTGATCTTGTCTCCTGAGCACTTGCGTTATGTCAGGTTCCCTATTCACCCCGTCTTTCAGCTCATGTGGGCAGTGCTTGGTCTGCATCCGTTTCAACTTAATCCGAACTCCTACCTCATGTTATCTGCCTTTTTGATCATGGGTCTGAAGTGGGAAGTTTCCCTGGGATTGTCTGATGTCCTATATCTGTACAATTGCGCCAAGCTAAGCAAGTATTTTCGGTATTTCAATTTCACACCTTTTCCAAAGATGAAGGTGTTCGCAGGGATTTCCTCTCGTGATAGTGATTGGAAATCTAAGGCTTTGATGATCTCTGGTGATTGGCGATCACCTGAGCTGGACTTACTTCCTCCAAAGGCCTTCGCGGATGACCTCGCTTATAAGATTTCTCAAGCAAAGTTCGACCTTCCCCTTAGTCGCGTGCACTGGCTGGAGACTCGTCTTGTTGAGCGGGGATGGTATCCCTCTCAGTTCGCGACCCTTGAGAATTTACTTGACATGGTGTCTATTCGTCCTTCGGCTTTGCTTGGCCGCTACCGAACGCACGTGAATCAGTCTCGGCATGAATTTATAGTTCAAACCTCTATACTTTTGCTTAGTTTATTCCTTAAAAAGATCAATTTAACTTTGTTATTTTCATTGGTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

26.17

Weight (kDa)

9.52

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AccBSI CCGCTC 1 cut(s) 478
AccII CGCG 3 cut(s) 392, 447, 503
AciI CCGC 3 cut(s) 392, 478, 559
AcoI YGGCCR 1 cut(s) 556
AcsI RAATTY 2 cut(s) 514, 593
AcuI CTGAAG 1 cut(s) 194
AcvI CACGTG 1 cut(s) 574
AfaI GTAC 2 cut(s) 218, 672
AgsI TTSAA 3 cut(s) 122, 256, 605
AhdI GACNNNNNGTC 1 cut(s) 529
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 3 cut(s) 88, 232, 364
AluI AGCT 3 cut(s) 88, 232, 364
Alw21I GWGCWC 2 cut(s) 48, 453
Alw26I GTCTC 3 cut(s) 42, 455, 588
Alw44I GTGCAC 1 cut(s) 449
AoxI GGCC 2 cut(s) 384, 556
ApaLI GTGCAC 1 cut(s) 449
ApoI RAATTY 2 cut(s) 514, 593
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 1 cut(s) 227
AsuHPI GGTGA 3 cut(s) 65, 348, 356
BaeGI GKGCMC 1 cut(s) 453
BauI CACGAG 1 cut(s) 303
BbrPI CACGTG 1 cut(s) 574
Bbv12I GWGCWC 2 cut(s) 48, 453
BccI CCATC 1 cut(s) 477
BciT130I CCWGG 1 cut(s) 191
BciVI GTATCC 1 cut(s) 498
BclI TGATCA 1 cut(s) 162
BcoDI GTCTC 3 cut(s) 42, 455, 588
BfuI GTATCC 1 cut(s) 498
BisI GCNGC 1 cut(s) 559
BlpI GCTNAGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 560
Bme1390I CCNGG 1 cut(s) 191
BmeRI GACNNNNNGTC 1 cut(s) 529
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 121
BpmI CTGGAG 1 cut(s) 479
Bpu10I CCTNAGC 2 cut(s) 42, 360
Bpu1102I GCTNAGC 1 cut(s) 233
BpuEI CTTGAG 2 cut(s) 402, 530
BsaAI YACGTR 1 cut(s) 574
BsaJI CCNNGG 2 cut(s) 189, 190
Bse1I ACTGG 1 cut(s) 458
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 2 cut(s) 189, 190
BseGI GGATG 3 cut(s) 112, 400, 488
BseMII CTCAG 3 cut(s) 33, 351, 509
BseNI ACTGG 1 cut(s) 458
BseSI GKGCMC 1 cut(s) 453
Bsh1236I CGCG 3 cut(s) 392, 447, 503
BshFI GGCC 2 cut(s) 386, 558
BsiHKAI GWGCWC 2 cut(s) 48, 453
BsmAI GTCTC 3 cut(s) 42, 455, 588
BsnI GGCC 2 cut(s) 386, 558
Bsp1286I GDGCHC 2 cut(s) 48, 453
Bsp1407I TGTACA 1 cut(s) 216
Bsp143I GATC 5 cut(s) 30, 162, 336, 353, 642
Bsp1720I GCTNAGC 1 cut(s) 233
Bsp68I TCGCGA 1 cut(s) 503
BspACI CCGC 3 cut(s) 392, 478, 559
BspANI GGCC 2 cut(s) 386, 558
BspCNI CTCAG 3 cut(s) 34, 352, 508
BspFNI CGCG 3 cut(s) 392, 447, 503
BspLI GGNNCC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 478
BsrGI TGTACA 1 cut(s) 216
BsrI ACTGG 1 cut(s) 458
BssECI CCNNGG 2 cut(s) 189, 190
BssMI GATC 5 cut(s) 30, 162, 336, 353, 642
BssSI CACGAG 1 cut(s) 303
Bst2BI CACGAG 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 191
BstAUI TGTACA 1 cut(s) 216
BstBAI YACGTR 1 cut(s) 574
BstC8I GCNNGC 1 cut(s) 449
BstDEI CTNAG 7 cut(s) 42, 233, 324, 360, 440, 495, 623
BstF5I GGATG 3 cut(s) 112, 400, 488
BstFNI CGCG 3 cut(s) 392, 447, 503
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 5 cut(s) 33, 165, 339, 356, 645
BstMAI GTCTC 3 cut(s) 42, 455, 588
BstMBI GATC 5 cut(s) 30, 162, 336, 353, 642
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 189
BstSLI GKGCMC 1 cut(s) 453
BstUI CGCG 3 cut(s) 392, 447, 503
BsuI GTATCC 1 cut(s) 498
BsuRI GGCC 2 cut(s) 386, 558
BtsCI GGATG 3 cut(s) 112, 400, 488
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 105, 451
BtuMI TCGCGA 1 cut(s) 503
Cac8I GCNNGC 1 cut(s) 449
CfoI GCGC 1 cut(s) 227
Csp6I GTAC 2 cut(s) 217, 671
CviAII CATG 5 cut(s) 91, 145, 166, 526, 590
CviJI RGCY 8 cut(s) 88, 232, 329, 364, 386, 457, 548, 558
CviKI_1 RGCY 8 cut(s) 88, 232, 329, 364, 386, 457, 548, 558
CviQI GTAC 2 cut(s) 217, 671
DdeI CTNAG 7 cut(s) 42, 233, 324, 360, 440, 495, 623
DpnI GATC 5 cut(s) 32, 164, 338, 355, 644
DpnII GATC 5 cut(s) 30, 162, 336, 353, 642
DriI GACNNNNNGTC 1 cut(s) 529
EaeI YGGCCR 1 cut(s) 556
Eam1105I GACNNNNNGTC 1 cut(s) 529
Eco147I AGGCCT 1 cut(s) 386
Eco57I CTGAAG 1 cut(s) 194
Eco72I CACGTG 1 cut(s) 574
EcoRII CCWGG 1 cut(s) 189
FaeI CATG 5 cut(s) 94, 148, 169, 529, 593
FatI CATG 5 cut(s) 90, 144, 165, 525, 589
FauI CCCGC 1 cut(s) 471
FbaI TGATCA 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 559
FokI GGATG 3 cut(s) 99, 407, 495
Fsp4HI GCNGC 1 cut(s) 559
GlaI GCGC 1 cut(s) 226
GluI GCNGC 1 cut(s) 559
GsuI CTGGAG 1 cut(s) 479
HaeIII GGCC 2 cut(s) 386, 558
HhaI GCGC 1 cut(s) 227
Hin1II CATG 5 cut(s) 94, 148, 169, 529, 593
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HinfI GANTC 2 cut(s) 463, 577
HphI GGTGA 3 cut(s) 65, 348, 356
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 3 cut(s) 132, 174, 202
Hpy188III TCNNGA 5 cut(s) 17, 28, 41, 305, 502
Hpy8I GTNNAC 1 cut(s) 451
HpyAV CCTTC 4 cut(s) 274, 397, 443, 552
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 2 cut(s) 112, 451
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 7 cut(s) 42, 233, 324, 360, 440, 495, 623
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 5 cut(s) 94, 148, 169, 529, 593
HspAI GCGC 1 cut(s) 225
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 5 cut(s) 30, 162, 336, 353, 642
LweI GCATC 1 cut(s) 121
MaeII ACGT 1 cut(s) 573
MalI GATC 5 cut(s) 32, 164, 338, 355, 644
MbiI CCGCTC 1 cut(s) 478
MboI GATC 5 cut(s) 30, 162, 336, 353, 642
MfeI CAATTG 1 cut(s) 220
MhlI GDGCHC 2 cut(s) 48, 453
MluCI AATT 5 cut(s) 220, 256, 514, 593, 646
MlyI GAGTC 1 cut(s) 457
MnlI CCTC 6 cut(s) 152, 310, 387, 410, 502, 619
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 3 cut(s) 126, 636, 650
MspR9I CCNGG 1 cut(s) 191
MunI CAATTG 1 cut(s) 220
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 3 cut(s) 392, 447, 503
MwoI GCNNNNNNNGC 1 cut(s) 109
NdeII GATC 5 cut(s) 30, 162, 336, 353, 642
NlaIII CATG 5 cut(s) 94, 148, 169, 529, 593
NlaIV GGNNCC 1 cut(s) 65
NmeAIII GCCGAG 1 cut(s) 565
NruI TCGCGA 1 cut(s) 503
PasI CCCWGGG 1 cut(s) 190
PceI AGGCCT 1 cut(s) 386
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 1 cut(s) 577
PkrI GCNGC 1 cut(s) 560
PleI GAGTC 1 cut(s) 457
PmaCI CACGTG 1 cut(s) 574
PmlI CACGTG 1 cut(s) 574
PpsI GAGTC 1 cut(s) 457
Ppu21I YACGTR 1 cut(s) 574
PsiI TTATAA 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 189
PspCI CACGTG 1 cut(s) 574
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 65
RruI TCGCGA 1 cut(s) 503
RsaI GTAC 2 cut(s) 218, 672
RsaNI GTAC 2 cut(s) 217, 671
SaqAI TTAA 3 cut(s) 126, 636, 650
SatI GCNGC 1 cut(s) 559
Sau3AI GATC 5 cut(s) 30, 162, 336, 353, 642
SchI GAGTC 1 cut(s) 457
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 2 cut(s) 48, 453
SfaNI GCATC 1 cut(s) 121
SmlI CTYRAG 2 cut(s) 417, 509
SmoI CTYRAG 2 cut(s) 417, 509
Sse9I AATT 5 cut(s) 220, 256, 514, 593, 646
SseBI AGGCCT 1 cut(s) 386
SsiI CCGC 3 cut(s) 392, 478, 559
SspI AATATT 1 cut(s) 13
StuI AGGCCT 1 cut(s) 386
StyD4I CCNGG 1 cut(s) 189
TaiI ACGT 1 cut(s) 576
TaqI TCGA 1 cut(s) 429
TasI AATT 5 cut(s) 220, 256, 514, 593, 646
TatI WGTACW 1 cut(s) 216
TauI GCSGC 1 cut(s) 561
TfiI GAWTC 1 cut(s) 577
Tru1I TTAA 3 cut(s) 126, 636, 650
Tru9I TTAA 3 cut(s) 126, 636, 650
TscAI CASTG 2 cut(s) 105, 458
TspDTI ATGAA 3 cut(s) 293, 606, 654
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 2 cut(s) 105, 458
VneI GTGCAC 1 cut(s) 449
XapI RAATTY 2 cut(s) 514, 593
XmnI GAANNNNTTC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.