Rmu_sc0017748.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017748.1
OG0000480
Physical Location & Seq
Forward (+)
1 .. 853
853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017748.1_g000001.1.cds

Sequence Viewer

Length: 677 bp
agggttcatttcactcctccacccatgccaaatactaccgctcatccatcccctcgaagcgcccatatgtcctcggcaacccgattggtcatgatgcctcctcttccatccaaagttctagaattaagtttcaggaaacgtgacaactcccatgttctggtaggaaaatccatctcagccaatggtccggcagtgtcagcggtagctagtgcatttgcctcactgaggcccaattcagagctgtctcctaagagtcctacggaactgtacaatgacatgtgcgcttttcagctggatgccctcatggcgtcccaccacttcctacgcagcctcgacgccttccaattgaagcaacaacaacagttggacgaggcgagtcgcaaactcaaatcccaggaagatgagcttaacgaacagatgaaaacaatggcggacctaagtctcctcctcgaggacaaagatcgtcagatagcgacattgaaagctgatttggacttagtaactcggagcaaggagaaggaattcgagagaggggctgctcagatgaggcgcgtatcagccaaaaattttctgctggggtggaatcaagccctgtacagagaggaggacaggtgctatgttggccctgacgaattcgaccattactacggattcgcccccatgtgctactctcccat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

25.42

Weight (kDa)

7.21

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 449
AccB7I CCANNNNNTGG 1 cut(s) 157
AccBSI CCGCTC 1 cut(s) 41
AccII CGCG 1 cut(s) 552
AciI CCGC 3 cut(s) 39, 200, 431
AcsI RAATTY 3 cut(s) 521, 565, 632
AcyI GRCGYC 2 cut(s) 308, 336
AfaI GTAC 2 cut(s) 269, 596
AfiI CCNNNNNNNGG 3 cut(s) 157, 225, 451
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 2 cut(s) 349, 481
AjnI CCWGG 1 cut(s) 393
AjuI GAANNNNNNNTTGG 2 cut(s) 473, 505
AluBI AGCT 5 cut(s) 206, 241, 292, 406, 485
AluI AGCT 5 cut(s) 206, 241, 292, 406, 485
Alw26I GTCTC 2 cut(s) 249, 446
Ama87I CYCGRG 1 cut(s) 449
AoxI GGCC 2 cut(s) 227, 622
ApeKI GCWGC 2 cut(s) 327, 536
ApoI RAATTY 3 cut(s) 521, 565, 632
Asp700I GAANNNNTTC 1 cut(s) 521
AspLEI GCGC 3 cut(s) 62, 284, 552
AspS9I GGNCC 4 cut(s) 185, 228, 433, 623
AvaI CYCGRG 1 cut(s) 449
AvaII GGWCC 2 cut(s) 185, 433
BbvI GCAGC 2 cut(s) 339, 523
BccI CCATC 3 cut(s) 55, 115, 179
BciT130I CCWGG 1 cut(s) 395
BcoDI GTCTC 2 cut(s) 249, 446
BfaI CTAG 2 cut(s) 119, 207
BfoI RGCGCY 1 cut(s) 63
BglI GCCNNNNNGGC 1 cut(s) 305
BisI GCNGC 2 cut(s) 328, 537
BlsI GCNGC 2 cut(s) 329, 538
Bme1390I CCNGG 1 cut(s) 395
Bme18I GGWCC 2 cut(s) 185, 433
BmeT110I CYCGRG 1 cut(s) 449
BmgT120I GGNCC 4 cut(s) 185, 228, 433, 623
BmrFI CCNGG 1 cut(s) 395
BmsI GCATC 2 cut(s) 84, 286
BoxI GACNNNNGTC 1 cut(s) 438
BsaHI GRCGYC 2 cut(s) 308, 336
BsaJI CCNNGG 2 cut(s) 72, 393
BsaXI ACNNNNNCTCC 2 cut(s) 596, 626
Bsc4I CCNNNNNNNGG 3 cut(s) 157, 225, 451
BseBI CCWGG 1 cut(s) 395
BseDI CCNNGG 2 cut(s) 72, 393
BseGI GGATG 4 cut(s) 43, 47, 107, 301
BseLI CCNNNNNNNGG 3 cut(s) 157, 225, 451
BseMII CTCAG 3 cut(s) 189, 215, 554
BseRI GAGGAG 5 cut(s) 6, 90, 434, 437, 617
BseXI GCAGC 2 cut(s) 339, 523
BseYI CCCAGC 1 cut(s) 574
Bsh1236I CGCG 1 cut(s) 552
BshFI GGCC 2 cut(s) 229, 624
BsiHKCI CYCGRG 1 cut(s) 449
BsiSI CCGG 1 cut(s) 188
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 3 cut(s) 157, 225, 451
BsmAI GTCTC 2 cut(s) 249, 446
BsmFI GGGAC 1 cut(s) 295
BsnI GGCC 2 cut(s) 229, 624
BsoBI CYCGRG 1 cut(s) 449
Bsp1407I TGTACA 2 cut(s) 267, 594
Bsp143I GATC 1 cut(s) 460
BspACI CCGC 3 cut(s) 39, 200, 431
BspANI GGCC 2 cut(s) 229, 624
BspCNI CTCAG 3 cut(s) 188, 216, 553
BspFNI CGCG 1 cut(s) 552
BspHI TCATGA 1 cut(s) 90
BsrBI CCGCTC 1 cut(s) 41
BsrGI TGTACA 2 cut(s) 267, 594
BssECI CCNNGG 2 cut(s) 72, 393
BssMI GATC 1 cut(s) 460
BssNI GRCGYC 2 cut(s) 308, 336
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 2 cut(s) 267, 363
Bst6I CTCTTC 1 cut(s) 108
BstACI GRCGYC 2 cut(s) 308, 336
BstAUI TGTACA 2 cut(s) 267, 594
BstDEI CTNAG 6 cut(s) 175, 224, 249, 437, 496, 540
BstENI CCTNNNNNAGG 2 cut(s) 223, 449
BstF5I GGATG 4 cut(s) 43, 47, 107, 301
BstFNI CGCG 1 cut(s) 552
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 3 cut(s) 62, 284, 552
BstKTI GATC 1 cut(s) 463
BstMAI GTCTC 2 cut(s) 249, 446
BstMBI GATC 1 cut(s) 460
BstMWI GCNNNNNNNGC 3 cut(s) 197, 305, 621
BstNI CCWGG 1 cut(s) 395
BstNSI RCATGY 1 cut(s) 280
BstPAI GACNNNNGTC 1 cut(s) 438
BstSCI CCNGG 1 cut(s) 393
BstUI CGCG 1 cut(s) 552
BstV1I GCAGC 2 cut(s) 339, 523
BsuRI GGCC 2 cut(s) 229, 624
BtsCI GGATG 4 cut(s) 43, 47, 107, 301
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 198, 221
CciI TCATGA 1 cut(s) 90
CfoI GCGC 3 cut(s) 62, 284, 552
Cfr13I GGNCC 4 cut(s) 185, 228, 433, 623
CseI GACGC 2 cut(s) 297, 344
Csp6I GTAC 2 cut(s) 268, 595
CviAII CATG 6 cut(s) 25, 91, 152, 277, 304, 661
CviQI GTAC 2 cut(s) 268, 595
DdeI CTNAG 6 cut(s) 175, 224, 249, 437, 496, 540
DpnI GATC 1 cut(s) 462
DpnII GATC 1 cut(s) 460
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
EciI GGCGGA 1 cut(s) 446
Eco47I GGWCC 2 cut(s) 185, 433
Eco88I CYCGRG 1 cut(s) 449
EcoNI CCTNNNNNAGG 2 cut(s) 223, 449
EcoRI GAATTC 2 cut(s) 521, 632
EcoRII CCWGG 1 cut(s) 393
FaeI CATG 6 cut(s) 28, 94, 155, 280, 307, 664
FaiI YATR 9 cut(s) 26, 66, 68, 92, 153, 278, 305, 618, 662
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FaqI GGGAC 1 cut(s) 295
FatI CATG 6 cut(s) 24, 90, 151, 276, 303, 660
FauNDI CATATG 1 cut(s) 66
Fnu4HI GCNGC 2 cut(s) 328, 537
FokI GGATG 4 cut(s) 30, 34, 94, 308
Fsp4HI GCNGC 2 cut(s) 328, 537
FspBI CTAG 2 cut(s) 119, 207
GlaI GCGC 3 cut(s) 61, 283, 551
GluI GCNGC 2 cut(s) 328, 537
GsaI CCCAGC 1 cut(s) 578
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 2 cut(s) 229, 624
HapII CCGG 1 cut(s) 188
HgaI GACGC 2 cut(s) 297, 344
HhaI GCGC 3 cut(s) 62, 284, 552
Hin1I GRCGYC 2 cut(s) 308, 336
Hin1II CATG 6 cut(s) 28, 94, 155, 280, 307, 664
Hin6I GCGC 3 cut(s) 60, 282, 550
HinP1I GCGC 3 cut(s) 60, 282, 550
HinfI GANTC 4 cut(s) 253, 376, 583, 651
HpaII CCGG 1 cut(s) 188
Hpy188I TCNGA 4 cut(s) 238, 468, 507, 543
Hpy188III TCNNGA 4 cut(s) 91, 119, 133, 526
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 2 cut(s) 349, 511
HpyCH4III ACNGT 2 cut(s) 267, 363
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 305, 621
HpyF3I CTNAG 6 cut(s) 175, 224, 249, 437, 496, 540
HpySE526I ACGT 1 cut(s) 139
Hsp92I GRCGYC 2 cut(s) 308, 336
Hsp92II CATG 6 cut(s) 28, 94, 155, 280, 307, 664
HspAI GCGC 3 cut(s) 60, 282, 550
Kzo9I GATC 1 cut(s) 460
LmnI GCTCC 1 cut(s) 507
Lsp1109I GCAGC 2 cut(s) 339, 523
LweI GCATC 2 cut(s) 84, 286
MaeI CTAG 2 cut(s) 119, 207
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 2 cut(s) 140, 499
MalI GATC 1 cut(s) 462
MbiI CCGCTC 1 cut(s) 41
MboI GATC 1 cut(s) 460
MboII GAAGA 2 cut(s) 95, 410
MfeI CAATTG 1 cut(s) 344
MluCI AATT 6 cut(s) 122, 232, 344, 521, 565, 632
MlyI GAGTC 2 cut(s) 262, 385
MmeI TCCRAC 1 cut(s) 345
MroXI GAANNNNTTC 1 cut(s) 521
MseI TTAA 2 cut(s) 125, 408
MspA1I CMGCKG 2 cut(s) 200, 292
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 395
MunI CAATTG 1 cut(s) 344
MvaI CCWGG 1 cut(s) 395
MvnI CGCG 1 cut(s) 552
MwoI GCNNNNNNNGC 3 cut(s) 197, 305, 621
NdeI CATATG 1 cut(s) 66
NdeII GATC 1 cut(s) 460
NlaIII CATG 6 cut(s) 28, 94, 155, 280, 307, 664
NmeAIII GCCGAG 1 cut(s) 53
NmuCI GTSAC 1 cut(s) 140
NspI RCATGY 1 cut(s) 280
PaeR7I CTCGAG 1 cut(s) 449
PagI TCATGA 1 cut(s) 90
PciI ACATGT 1 cut(s) 276
PdmI GAANNNNTTC 1 cut(s) 521
PfeI GAWTC 2 cut(s) 583, 651
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 2 cut(s) 329, 538
PleI GAGTC 2 cut(s) 261, 384
PpsI GAGTC 2 cut(s) 261, 384
PscI ACATGT 1 cut(s) 276
PshAI GACNNNNGTC 1 cut(s) 438
Psp6I CCWGG 1 cut(s) 393
PspFI CCCAGC 1 cut(s) 574
PspGI CCWGG 1 cut(s) 393
PspPI GGNCC 4 cut(s) 185, 228, 433, 623
PspXI VCTCGAGB 1 cut(s) 449
PvuII CAGCTG 1 cut(s) 292
RsaI GTAC 2 cut(s) 269, 596
RsaNI GTAC 2 cut(s) 268, 595
SaqAI TTAA 2 cut(s) 125, 408
SatI GCNGC 2 cut(s) 328, 537
Sau3AI GATC 1 cut(s) 460
Sau96I GGNCC 4 cut(s) 185, 228, 433, 623
SchI GAGTC 2 cut(s) 262, 385
ScrFI CCNGG 1 cut(s) 395
SetI ASST 8 cut(s) 142, 208, 243, 294, 408, 438, 487, 614
SfaNI GCATC 2 cut(s) 84, 286
Sfr274I CTCGAG 1 cut(s) 449
SinI GGWCC 2 cut(s) 185, 433
SlaI CTCGAG 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 6 cut(s) 122, 232, 344, 521, 565, 632
SsiI CCGC 3 cut(s) 39, 200, 431
SspMI CTAG 2 cut(s) 119, 207
StyD4I CCNGG 1 cut(s) 393
TaaI ACNGT 2 cut(s) 267, 363
TaiI ACGT 1 cut(s) 142
TaqI TCGA 5 cut(s) 55, 333, 450, 525, 636
TasI AATT 6 cut(s) 122, 232, 344, 521, 565, 632
TatI WGTACW 2 cut(s) 267, 594
TfiI GAWTC 2 cut(s) 583, 651
Tru1I TTAA 2 cut(s) 125, 408
Tru9I TTAA 2 cut(s) 125, 408
TscAI CASTG 2 cut(s) 198, 228
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 2 cut(s) 327, 536
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 434
TspGWI ACGGA 2 cut(s) 275, 663
TspRI CASTG 2 cut(s) 198, 228
Van91I CCANNNNNTGG 1 cut(s) 157
VpaK11BI GGWCC 2 cut(s) 185, 433
XagI CCTNNNNNAGG 2 cut(s) 223, 449
XapI RAATTY 3 cut(s) 521, 565, 632
XbaI TCTAGA 1 cut(s) 118
XceI RCATGY 1 cut(s) 280
XhoI CTCGAG 1 cut(s) 449
XmnI GAANNNNTTC 1 cut(s) 521
XspI CTAG 2 cut(s) 119, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.