Rmu_sc0031144.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031144.1
OG0000480
Physical Location & Seq
Forward (+)
1 .. 771
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031144.1_g000001.1.cds

Sequence Viewer

Length: 588 bp
gatccaaccgctttcatgccgctgccacccaaggctttggagctcaaattcaagaaactggatgacacctatatcttagctggggagtccctttcttccactggcttggtagcattggcggtggctggcacctttgtatcgtcacatcctaaattaggaggtcctcccaagagccttatggcgctgtacgataacgtttgtgcctctcagcttgatgctcacttggcatctcattgcctcttgcacggcattgacgctttgcataccaaacaacaacagaaactcgacaaggcgaatcgtaaactcgagtttaaagagaaagagctcgttgatcagatgaggacaatggtggaattggccaccatgaagtgcgtgtcagctaaatacttccgactcgggtggaatcaagctctgactgaagaagacaaaaggctctacgtaggtcctgatgagttcgaccatttttatgggtttgatcttatgggttactctcccattcatggcatgcaaccaggagatgtcccgtcgcctacctcgagcgagtctgacaaggaggaggcgaaggaggaggtgtcgtccaccgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

21.52

Weight (kDa)

5.48

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 128
AciI CCGC 4 cut(s) 9, 20, 119, 582
AclI AACGTT 1 cut(s) 195
AcoI YGGCCR 1 cut(s) 357
AcsI RAATTY 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 438
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 155, 500
AgsI TTSAA 1 cut(s) 52
AjnI CCWGG 1 cut(s) 511
AluBI AGCT 6 cut(s) 43, 80, 211, 325, 380, 410
AluI AGCT 6 cut(s) 43, 80, 211, 325, 380, 410
Alw21I GWGCWC 2 cut(s) 45, 327
Ama87I CYCGRG 3 cut(s) 305, 395, 535
AoxI GGCC 1 cut(s) 357
ApeKI GCWGC 1 cut(s) 22
ApoI RAATTY 1 cut(s) 47
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 2 cut(s) 161, 443
AvaI CYCGRG 3 cut(s) 305, 395, 535
AvaII GGWCC 2 cut(s) 161, 443
BaeI ACNNNNGTAYC 2 cut(s) 120, 153
BalI TGGCCA 1 cut(s) 359
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 2 cut(s) 45, 327
BbsI GAAGAC 1 cut(s) 429
Bbv12I GWGCWC 2 cut(s) 45, 327
BbvI GCAGC 1 cut(s) 9
BceAI ACGGC 1 cut(s) 262
BciT130I CCWGG 1 cut(s) 513
BclI TGATCA 1 cut(s) 331
BfoI RGCGCY 1 cut(s) 185
BisI GCNGC 2 cut(s) 20, 23
BlsI GCNGC 2 cut(s) 21, 24
Bme1390I CCNGG 1 cut(s) 513
Bme18I GGWCC 2 cut(s) 161, 443
BmeT110I CYCGRG 3 cut(s) 305, 395, 535
BmgT120I GGNCC 2 cut(s) 161, 443
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 513
BmsI GCATC 2 cut(s) 205, 236
BpiI GAAGAC 1 cut(s) 429
BsaAI YACGTR 1 cut(s) 439
BsaJI CCNNGG 1 cut(s) 30
BsaXI ACNNNNNCTCC 3 cut(s) 557, 560, 587
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 500
Bse1I ACTGG 2 cut(s) 63, 106
Bse3DI GCAATG 1 cut(s) 232
BseBI CCWGG 1 cut(s) 513
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 2 cut(s) 67, 145
BseLI CCNNNNNNNGG 2 cut(s) 155, 500
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 2 cut(s) 63, 106
BseRI GAGGAG 2 cut(s) 569, 581
BseXI GCAGC 1 cut(s) 9
BseYI CCCAGC 1 cut(s) 80
BshFI GGCC 1 cut(s) 359
BshNI GGYRCC 1 cut(s) 128
BsiHKAI GWGCWC 2 cut(s) 45, 327
BsiHKCI CYCGRG 3 cut(s) 305, 395, 535
BslFI GGGAC 2 cut(s) 73, 506
BslI CCNNNNNNNGG 2 cut(s) 155, 500
BsmFI GGGAC 2 cut(s) 73, 506
BsnI GGCC 1 cut(s) 359
BsoBI CYCGRG 3 cut(s) 305, 395, 535
Bsp1286I GDGCHC 2 cut(s) 45, 327
Bsp143I GATC 2 cut(s) 331, 475
BspACI CCGC 4 cut(s) 9, 20, 119, 582
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 130
BspT107I GGYRCC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 232
BsrI ACTGG 2 cut(s) 63, 106
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 2 cut(s) 331, 475
BssT1I CCWWGG 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 513
BstBAI YACGTR 1 cut(s) 439
BstC8I GCNNGC 2 cut(s) 127, 506
BstDEI CTNAG 2 cut(s) 76, 207
BstENI CCTNNNNNAGG 1 cut(s) 153
BstF5I GGATG 2 cut(s) 67, 145
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 3 cut(s) 4, 334, 478
BstMBI GATC 2 cut(s) 331, 475
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNI CCWGG 1 cut(s) 513
BstNSI RCATGY 1 cut(s) 508
BstSCI CCNGG 1 cut(s) 511
BstSNI TACGTA 1 cut(s) 439
BstV1I GCAGC 1 cut(s) 9
BstV2I GAAGAC 1 cut(s) 429
BstXI CCANNNNNNTGG 3 cut(s) 37, 106, 467
BsuRI GGCC 1 cut(s) 359
BtsCI GGATG 2 cut(s) 67, 145
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 2 cut(s) 127, 506
CfoI GCGC 1 cut(s) 184
Cfr13I GGNCC 2 cut(s) 161, 443
CseI GACGC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 187
CviAII CATG 4 cut(s) 16, 364, 500, 505
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 2 cut(s) 76, 207
DpnI GATC 3 cut(s) 3, 333, 477
DpnII GATC 2 cut(s) 331, 475
DraI TTTAAA 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 357
Ecl136II GAGCTC 2 cut(s) 43, 325
Eco105I TACGTA 1 cut(s) 439
Eco130I CCWWGG 1 cut(s) 30
Eco24I GRGCYC 2 cut(s) 45, 327
Eco47I GGWCC 2 cut(s) 161, 443
Eco53kI GAGCTC 2 cut(s) 43, 325
Eco57I CTGAAG 1 cut(s) 438
Eco88I CYCGRG 3 cut(s) 305, 395, 535
EcoICRI GAGCTC 2 cut(s) 43, 325
EcoNI CCTNNNNNAGG 1 cut(s) 153
EcoO109I RGGNCCY 2 cut(s) 161, 443
EcoRII CCWGG 1 cut(s) 511
EcoT14I CCWWGG 1 cut(s) 30
EcoT38I GRGCYC 2 cut(s) 45, 327
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 4 cut(s) 19, 367, 503, 508
FaiI YATR 9 cut(s) 17, 72, 179, 264, 365, 468, 482, 501, 506
FaqI GGGAC 2 cut(s) 73, 506
FatI CATG 4 cut(s) 15, 363, 499, 504
FbaI TGATCA 1 cut(s) 331
Fnu4HI GCNGC 2 cut(s) 20, 23
FokI GGATG 2 cut(s) 74, 132
FriOI GRGCYC 2 cut(s) 45, 327
Fsp4HI GCNGC 2 cut(s) 20, 23
GlaI GCGC 1 cut(s) 183
GluI GCNGC 2 cut(s) 20, 23
GsaI CCCAGC 1 cut(s) 84
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 1 cut(s) 359
HgaI GACGC 1 cut(s) 263
HhaI GCGC 1 cut(s) 184
Hin1II CATG 4 cut(s) 19, 367, 503, 508
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HinfI GANTC 5 cut(s) 86, 295, 393, 403, 542
Hpy166II GTNNAC 2 cut(s) 302, 579
Hpy188I TCNGA 4 cut(s) 336, 392, 414, 547
Hpy188III TCNNGA 2 cut(s) 52, 446
Hpy8I GTNNAC 2 cut(s) 302, 579
Hpy99I CGWCG 1 cut(s) 529
HpyAV CCTTC 1 cut(s) 556
HpyCH4IV ACGT 2 cut(s) 195, 438
HpyCH4V TGCA 3 cut(s) 244, 262, 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 2 cut(s) 76, 207
HpySE526I ACGT 2 cut(s) 195, 438
Hsp92II CATG 4 cut(s) 19, 367, 503, 508
HspAI GCGC 1 cut(s) 182
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 2 cut(s) 331, 475
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 7 cut(s) 44, 66, 87, 111, 459, 498, 525
Lsp1109I GCAGC 1 cut(s) 9
LweI GCATC 2 cut(s) 205, 236
MaeII ACGT 2 cut(s) 195, 438
MaeIII GTNAC 2 cut(s) 141, 485
MalI GATC 3 cut(s) 3, 333, 477
MboI GATC 2 cut(s) 331, 475
MboII GAAGA 3 cut(s) 87, 431, 434
MhlI GDGCHC 2 cut(s) 45, 327
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 3 cut(s) 47, 152, 353
MluNI TGGCCA 1 cut(s) 359
MlyI GAGTC 3 cut(s) 95, 387, 551
MmeI TCCRAC 2 cut(s) 29, 415
Mox20I TGGCCA 1 cut(s) 359
MscI TGGCCA 1 cut(s) 359
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 465
Msp20I TGGCCA 1 cut(s) 359
MspA1I CMGCKG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 513
MvaI CCWGG 1 cut(s) 513
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 2 cut(s) 331, 475
NlaIII CATG 4 cut(s) 19, 367, 503, 508
NlaIV GGNNCC 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 141
NspI RCATGY 1 cut(s) 508
PaeI GCATGC 1 cut(s) 508
PaeR7I CTCGAG 2 cut(s) 305, 535
PcsI WCGNNNNNNNCGW 1 cut(s) 533
PfeI GAWTC 2 cut(s) 295, 403
PkrI GCNGC 2 cut(s) 21, 24
PleI GAGTC 3 cut(s) 94, 387, 550
PpsI GAGTC 3 cut(s) 94, 387, 550
Ppu21I YACGTR 1 cut(s) 439
PpuMI RGGWCCY 2 cut(s) 161, 443
Psp124BI GAGCTC 2 cut(s) 45, 327
Psp1406I AACGTT 1 cut(s) 195
Psp5II RGGWCCY 2 cut(s) 161, 443
Psp6I CCWGG 1 cut(s) 511
PspFI CCCAGC 1 cut(s) 80
PspGI CCWGG 1 cut(s) 511
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 2 cut(s) 161, 443
PspPPI RGGWCCY 2 cut(s) 161, 443
PspXI VCTCGAGB 2 cut(s) 305, 535
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 465
SacI GAGCTC 2 cut(s) 45, 327
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 2 cut(s) 20, 23
Sau3AI GATC 2 cut(s) 331, 475
Sau96I GGNCC 2 cut(s) 161, 443
SchI GAGTC 3 cut(s) 95, 387, 551
ScrFI CCNGG 1 cut(s) 513
SduI GDGCHC 2 cut(s) 45, 327
SfaNI GCATC 2 cut(s) 205, 236
Sfr274I CTCGAG 2 cut(s) 305, 535
SinI GGWCC 2 cut(s) 161, 443
SlaI CTCGAG 2 cut(s) 305, 535
SmiMI CAYNNNNRTG 1 cut(s) 465
SmlI CTYRAG 2 cut(s) 305, 535
SmoI CTYRAG 2 cut(s) 305, 535
SnaBI TACGTA 1 cut(s) 439
SphI GCATGC 1 cut(s) 508
Sse9I AATT 3 cut(s) 47, 152, 353
SsiI CCGC 4 cut(s) 9, 20, 119, 582
SstI GAGCTC 2 cut(s) 45, 327
StyD4I CCNGG 1 cut(s) 511
StyI CCWWGG 1 cut(s) 30
TaiI ACGT 2 cut(s) 198, 441
TaqI TCGA 4 cut(s) 285, 306, 456, 536
TasI AATT 3 cut(s) 47, 152, 353
TauI GCSGC 1 cut(s) 22
TfiI GAWTC 2 cut(s) 295, 403
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 141
TseI GCWGC 1 cut(s) 22
Tsp45I GTSAC 1 cut(s) 141
TspDTI ATGAA 3 cut(s) 4, 380, 488
TspRI CASTG 1 cut(s) 106
VpaK11BI GGWCC 2 cut(s) 161, 443
XagI CCTNNNNNAGG 1 cut(s) 153
XapI RAATTY 1 cut(s) 47
XceI RCATGY 1 cut(s) 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XhoI CTCGAG 2 cut(s) 305, 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.