Rroxscaffold_1G00031520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000480
Physical Location & Seq
Forward (+)
44468217 .. 44468765
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00031520.1

Sequence Viewer

Length: 363 bp
ATGACAATGGCCCGTCTCATTTTTCTCTATGAGGGTCTGTTCAAGGTTCAATGTAGTACTCTCGCACATGAGATACCACCTCCATCGCGCAAGGTTCTGGAGCTAAGTTTTAGAAAACATGATAACTCCTACATGCTAGCAGCAGAACCTTTTCTTTCCAATGGTCCGGTTGTGTTGGCGGTGGCCATTGCTTCCGTATCGCTGAAACCTAATTCGGTGTGGCTTCTCAAGAGTCCCATGGAATTTTATCTTGATGCTCTCATAGCTTCCTACCACTTCTTGCGTGGTCTTGACATTTTTCACTTCAAGCAACAGCAAAGACTAGACGTCACCGATTCTCGACTAAAGGATAAGGATCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.78

Weight (kDa)

9.13

Isoelectric Point (pI)

30.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 330
AccII CGCG 1 cut(s) 88
AciI CCGC 1 cut(s) 179
AcoI YGGCCR 1 cut(s) 183
AcsI RAATTY 1 cut(s) 242
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 1 cut(s) 58
AgsI TTSAA 3 cut(s) 43, 50, 307
AhdI GACNNNNNGTC 1 cut(s) 326
AluBI AGCT 2 cut(s) 103, 266
AluI AGCT 2 cut(s) 103, 266
Alw26I GTCTC 1 cut(s) 20
AoxI GGCC 2 cut(s) 9, 183
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 242
Asp700I GAANNNNTTC 1 cut(s) 150
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 2 cut(s) 10, 164
AsuHPI GGTGA 1 cut(s) 322
AsuNHI GCTAGC 1 cut(s) 136
AvaII GGWCC 1 cut(s) 164
BalI TGGCCA 1 cut(s) 185
BbvI GCAGC 1 cut(s) 152
BccI CCATC 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 2 cut(s) 137, 323
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BmcAI AGTACT 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 164
BmeRI GACNNNNNGTC 1 cut(s) 326
BmgT120I GGNCC 2 cut(s) 10, 164
BmsI GCATC 1 cut(s) 244
BmtI GCTAGC 1 cut(s) 140
BpmI CTGGAG 1 cut(s) 119
BpuEI CTTGAG 1 cut(s) 212
BsaBI GATNNNNATC 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 186
Bse8I GATNNNNATC 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 237
BseJI GATNNNNATC 1 cut(s) 354
BseMI GCAATG 1 cut(s) 186
BseXI GCAGC 1 cut(s) 152
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 2 cut(s) 11, 185
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 20
BsmBI CGTCTC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 2 cut(s) 11, 185
Bsp143I GATC 1 cut(s) 355
Bsp19I CCATGG 1 cut(s) 237
BspACI CCGC 1 cut(s) 179
BspANI GGCC 2 cut(s) 11, 185
BspFNI CGCG 1 cut(s) 88
BspOI GCTAGC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 1 cut(s) 355
BssNI GRCGYC 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 237
BstACI GRCGYC 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 104
BstDSI CCRYGG 1 cut(s) 237
BstFNI CGCG 1 cut(s) 88
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNSI RCATGY 1 cut(s) 136
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 152
BsuRI GGCC 2 cut(s) 11, 185
BtgI CCRYGG 1 cut(s) 237
BtgZI GCGATG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 138
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 10, 164
Csp6I GTAC 1 cut(s) 57
CviAII CATG 4 cut(s) 68, 119, 133, 238
CviJI RGCY 5 cut(s) 11, 103, 185, 223, 266
CviKI_1 RGCY 5 cut(s) 11, 103, 185, 223, 266
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 1 cut(s) 104
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
DriI GACNNNNNGTC 1 cut(s) 326
EaeI YGGCCR 1 cut(s) 183
Eam1105I GACNNNNNGTC 1 cut(s) 326
Eco130I CCWWGG 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
Esp3I CGTCTC 1 cut(s) 20
FaeI CATG 4 cut(s) 71, 122, 136, 241
FaiI YATR 6 cut(s) 30, 69, 120, 134, 239, 263
FaqI GGGAC 1 cut(s) 219
FatI CATG 4 cut(s) 67, 118, 132, 237
Fnu4HI GCNGC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 2 cut(s) 137, 323
GlaI GCGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 141
GsuI CTGGAG 1 cut(s) 119
HaeIII GGCC 2 cut(s) 11, 185
HapII CCGG 1 cut(s) 167
HhaI GCGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 4 cut(s) 71, 122, 136, 241
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HinfI GANTC 2 cut(s) 232, 335
HpaII CCGG 1 cut(s) 167
HphI GGTGA 1 cut(s) 322
Hpy188III TCNNGA 5 cut(s) 98, 229, 251, 290, 339
HpyCH4IV ACGT 1 cut(s) 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 327
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 4 cut(s) 71, 122, 136, 241
HspAI GCGC 1 cut(s) 88
Kzo9I GATC 1 cut(s) 355
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 2 cut(s) 83, 180
Lsp1109I GCAGC 1 cut(s) 152
LweI GCATC 1 cut(s) 244
MaeI CTAG 2 cut(s) 137, 323
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 328
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 2 cut(s) 211, 242
MluNI TGGCCA 1 cut(s) 185
MlyI GAGTC 1 cut(s) 241
MnlI CCTC 2 cut(s) 25, 90
Mox20I TGGCCA 1 cut(s) 185
MroXI GAANNNNTTC 1 cut(s) 150
MscI TGGCCA 1 cut(s) 185
MseI TTAA 1 cut(s) 361
Msp20I TGGCCA 1 cut(s) 185
MspI CCGG 1 cut(s) 167
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 1 cut(s) 263
NcoI CCATGG 1 cut(s) 237
NdeII GATC 1 cut(s) 355
NheI GCTAGC 1 cut(s) 136
NlaIII CATG 4 cut(s) 71, 122, 136, 241
NmuCI GTSAC 1 cut(s) 328
NspI RCATGY 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 335
PkrI GCNGC 1 cut(s) 142
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
PspPI GGNCC 2 cut(s) 10, 164
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 361
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 1 cut(s) 355
Sau96I GGNCC 2 cut(s) 10, 164
ScaI AGTACT 1 cut(s) 58
SchI GAGTC 1 cut(s) 241
SetI ASST 8 cut(s) 48, 82, 96, 105, 151, 211, 268, 330
SfaNI GCATC 1 cut(s) 244
SinI GGWCC 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 2 cut(s) 211, 242
SsiI CCGC 1 cut(s) 179
SspMI CTAG 2 cut(s) 137, 323
StyI CCWWGG 1 cut(s) 237
TaiI ACGT 1 cut(s) 330
TaqI TCGA 1 cut(s) 340
TasI AATT 2 cut(s) 211, 242
TatI WGTACW 1 cut(s) 56
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 1 cut(s) 361
Tru9I TTAA 1 cut(s) 361
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 328
TspGWI ACGGA 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 1 cut(s) 242
XceI RCATGY 1 cut(s) 136
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 2 cut(s) 137, 323
ZraI GACGTC 1 cut(s) 328
ZrmI AGTACT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.