Rmu_sc0002837.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002837.1
OG0000480
Physical Location & Seq
Reverse (-)
5846 .. 7148
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002837.1_g000002.1.cds

Sequence Viewer

Length: 780 bp
atggctccacaaaagaaacaaatccgtatcgttttcaattctcccgtaggacgtggcaaacatatccttggtgctgatgagcacactcctgatcgtcaggctcttattatgttttctcccgacagttcctctgacaggtcctccaaacgctcagggggattctcatttgatcttgacactcgccagttccttgaagatgtattgaactactccgacgatggccaggcgagtgttcctcgtgccccgaagcctcgtactggtcctagtcgccctcgtcgtcggagcatgagtactgacaagggaacaagtcttgaatctcatcgcctccgtactctgagagaggaatccttcgtgctacaggattcgctcgagcatgccttgtcggaggcccgcaatctgaaggtggaggtccacaacttgtcagtggagcttcaacgctcgagggaccatgcagagtgcttgaaagtagagctctgcgaatgctaccgacgagaaaggtttctggacgaggtccgcgttcaaagtcgtgaagatggatatcgtgatgccgtcatcgaataccgacaacgcatgatactgaacttccccgggatagacgagtcccttttgccgtacttcgacgttggcccctactctgacaagggtgcgtcgacgtcggcgttcatttcgatgctggtgcctctaaatcggcgtttatttcgacaaggatgcctcgaaatcggcgtctatttcgatgagggtgcctcgaaatcggcgtctatttcaacaaggatgccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

29.5

Weight (kDa)

8.33

Isoelectric Point (pI)

63.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 656
AccB1I GGYRCC 2 cut(s) 676, 740
AccI GTMKAC 1 cut(s) 650
AccII CGCG 1 cut(s) 516
AciI CCGC 2 cut(s) 391, 514
AcoI YGGCCR 1 cut(s) 220
AcuI CTGAAG 1 cut(s) 419
AcyI GRCGYC 3 cut(s) 653, 723, 755
AfaI GTAC 4 cut(s) 256, 292, 331, 614
AfiI CCNNNNNNNGG 2 cut(s) 135, 257
AgsI TTSAA 8 cut(s) 37, 194, 205, 314, 434, 463, 521, 765
AjiI CACGTC 1 cut(s) 53
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 2 cut(s) 430, 472
AluI AGCT 2 cut(s) 430, 472
Alw21I GWGCWC 2 cut(s) 84, 474
Ama87I CYCGRG 3 cut(s) 368, 439, 587
AoxI GGCC 3 cut(s) 220, 387, 625
ArsI GACNNNNNNTTYG 4 cut(s) 708, 740, 740, 772
Asp700I GAANNNNTTC 1 cut(s) 498
AspS9I GGNCC 7 cut(s) 138, 260, 388, 409, 445, 511, 626
AsuC2I CCSGG 2 cut(s) 588, 589
AvaI CYCGRG 3 cut(s) 368, 439, 587
AvaII GGWCC 5 cut(s) 138, 260, 409, 445, 511
BaeGI GKGCMC 1 cut(s) 244
BalI TGGCCA 1 cut(s) 222
BanI GGYRCC 2 cut(s) 676, 740
BanII GRGCYC 1 cut(s) 474
BauI CACGAG 1 cut(s) 237
Bbv12I GWGCWC 2 cut(s) 84, 474
BccI CCATC 2 cut(s) 212, 527
BceAI ACGGC 2 cut(s) 533, 595
BcgI CGANNNNNNTGC 6 cut(s) 658, 690, 692, 722, 724, 756
BciT130I CCWGG 1 cut(s) 224
BcnI CCSGG 2 cut(s) 588, 589
BfaI CTAG 1 cut(s) 264
BfmI CTRYAG 1 cut(s) 356
BmcAI AGTACT 1 cut(s) 292
Bme1390I CCNGG 3 cut(s) 224, 588, 589
Bme18I GGWCC 5 cut(s) 138, 260, 409, 445, 511
BmeT110I CYCGRG 3 cut(s) 368, 439, 587
BmgBI CACGTC 1 cut(s) 53
BmgT120I GGNCC 7 cut(s) 138, 260, 388, 409, 445, 511, 626
BmiI GGNNCC 5 cut(s) 6, 446, 628, 678, 742
BmrFI CCNGG 3 cut(s) 224, 588, 589
BmsI GCATC 4 cut(s) 535, 660, 698, 762
BplI GAGNNNNNCTC 4 cut(s) 220, 252, 728, 760
Bpu10I CCTNAGC 1 cut(s) 151
BpuMI CCSGG 2 cut(s) 588, 589
BsaBI GATNNNNATC 1 cut(s) 537
BsaHI GRCGYC 3 cut(s) 653, 723, 755
BsaJI CCNNGG 3 cut(s) 67, 586, 587
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 274, 304
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 257
Bse1I ACTGG 2 cut(s) 184, 262
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 3 cut(s) 67, 586, 587
BseGI GGATG 2 cut(s) 713, 777
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 2 cut(s) 135, 257
BseMII CTCAG 2 cut(s) 165, 326
BseNI ACTGG 2 cut(s) 184, 262
BseSI GKGCMC 1 cut(s) 244
Bsh1236I CGCG 1 cut(s) 516
BshFI GGCC 3 cut(s) 222, 389, 627
BshNI GGYRCC 2 cut(s) 676, 740
BsiHKAI GWGCWC 2 cut(s) 84, 474
BsiHKCI CYCGRG 3 cut(s) 368, 439, 587
BsiSI CCGG 1 cut(s) 588
BslFI GGGAC 2 cut(s) 458, 586
BslI CCNNNNNNNGG 2 cut(s) 135, 257
BsmFI GGGAC 2 cut(s) 458, 586
BsmI GAATGC 1 cut(s) 485
BsnI GGCC 3 cut(s) 222, 389, 627
BsoBI CYCGRG 3 cut(s) 368, 439, 587
Bsp1286I GDGCHC 3 cut(s) 84, 244, 474
Bsp143I GATC 2 cut(s) 91, 169
BspACI CCGC 2 cut(s) 391, 514
BspANI GGCC 3 cut(s) 222, 389, 627
BspCNI CTCAG 2 cut(s) 164, 327
BspFNI CGCG 1 cut(s) 516
BspLI GGNNCC 5 cut(s) 6, 446, 628, 678, 742
BspT107I GGYRCC 2 cut(s) 676, 740
BsrI ACTGG 2 cut(s) 184, 262
BssECI CCNNGG 3 cut(s) 67, 586, 587
BssMI GATC 2 cut(s) 91, 169
BssNI GRCGYC 3 cut(s) 653, 723, 755
BssSI CACGAG 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 67
Bst2BI CACGAG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 125
BstACI GRCGYC 3 cut(s) 653, 723, 755
BstC8I GCNNGC 2 cut(s) 375, 391
BstDEI CTNAG 2 cut(s) 151, 335
BstENI CCTNNNNNAGG 1 cut(s) 133
BstF5I GGATG 2 cut(s) 713, 777
BstFNI CGCG 1 cut(s) 516
BstKTI GATC 2 cut(s) 94, 172
BstMBI GATC 2 cut(s) 91, 169
BstNI CCWGG 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 3 cut(s) 222, 586, 587
BstSFI CTRYAG 1 cut(s) 356
BstSLI GKGCMC 1 cut(s) 244
BstUI CGCG 1 cut(s) 516
BsuRI GGCC 3 cut(s) 222, 389, 627
BtgZI GCGATG 1 cut(s) 305
BtrI CACGTC 1 cut(s) 53
BtsCI GGATG 2 cut(s) 713, 777
BtsIMutI CAGTG 1 cut(s) 429
Cac8I GCNNGC 2 cut(s) 375, 391
Cfr13I GGNCC 7 cut(s) 138, 260, 388, 409, 445, 511, 626
Cfr9I CCCGGG 1 cut(s) 587
CseI GACGC 3 cut(s) 636, 712, 744
Csp6I GTAC 4 cut(s) 255, 291, 330, 613
CviAII CATG 4 cut(s) 286, 374, 449, 571
CviJI RGCY 8 cut(s) 5, 101, 222, 250, 389, 430, 472, 627
CviKI_1 RGCY 8 cut(s) 5, 101, 222, 250, 389, 430, 472, 627
CviQI GTAC 4 cut(s) 255, 291, 330, 613
DdeI CTNAG 2 cut(s) 151, 335
DpnI GATC 2 cut(s) 93, 171
DpnII GATC 2 cut(s) 91, 169
EaeI YGGCCR 1 cut(s) 220
Ecl136II GAGCTC 1 cut(s) 472
Eco130I CCWWGG 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 474
Eco32I GATATC 1 cut(s) 539
Eco47I GGWCC 5 cut(s) 138, 260, 409, 445, 511
Eco53kI GAGCTC 1 cut(s) 472
Eco57I CTGAAG 1 cut(s) 419
Eco88I CYCGRG 3 cut(s) 368, 439, 587
EcoICRI GAGCTC 1 cut(s) 472
EcoNI CCTNNNNNAGG 1 cut(s) 133
EcoO109I RGGNCCY 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 222
EcoRV GATATC 1 cut(s) 539
EcoT14I CCWWGG 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 4 cut(s) 289, 377, 452, 574
FaiI YATR 6 cut(s) 63, 110, 287, 375, 450, 572
FalI AAGNNNNNCTT 1 cut(s) 760
FaqI GGGAC 2 cut(s) 458, 586
FatI CATG 4 cut(s) 285, 373, 448, 570
FauI CCCGC 1 cut(s) 398
FblI GTMKAC 1 cut(s) 650
FokI GGATG 1 cut(s) 720
FriOI GRGCYC 1 cut(s) 474
FspBI CTAG 1 cut(s) 264
HaeIII GGCC 3 cut(s) 222, 389, 627
HapII CCGG 1 cut(s) 588
HgaI GACGC 3 cut(s) 636, 712, 744
Hin1I GRCGYC 3 cut(s) 653, 723, 755
Hin1II CATG 4 cut(s) 289, 377, 452, 574
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HinfI GANTC 5 cut(s) 159, 314, 344, 362, 599
HpaII CCGG 1 cut(s) 588
Hpy166II GTNNAC 2 cut(s) 412, 651
Hpy188I TCNGA 7 cut(s) 133, 214, 282, 336, 385, 399, 637
Hpy188III TCNNGA 7 cut(s) 89, 119, 173, 311, 503, 527, 542
Hpy8I GTNNAC 2 cut(s) 412, 651
Hpy99I CGWCG 8 cut(s) 218, 279, 282, 492, 623, 652, 655, 658
HpyAV CCTTC 2 cut(s) 358, 394
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 3 cut(s) 52, 621, 653
HpyCH4V TGCA 1 cut(s) 452
HpyF3I CTNAG 2 cut(s) 151, 335
HpySE526I ACGT 3 cut(s) 52, 621, 653
Hsp92I GRCGYC 3 cut(s) 653, 723, 755
Hsp92II CATG 4 cut(s) 289, 377, 452, 574
Kzo9I GATC 2 cut(s) 91, 169
LmnI GCTCC 3 cut(s) 10, 282, 427
LweI GCATC 4 cut(s) 535, 660, 698, 762
MaeI CTAG 1 cut(s) 264
MaeII ACGT 3 cut(s) 52, 621, 653
MalI GATC 2 cut(s) 93, 171
MboI GATC 2 cut(s) 91, 169
MboII GAAGA 2 cut(s) 206, 542
MhlI GDGCHC 3 cut(s) 84, 244, 474
MlsI TGGCCA 1 cut(s) 222
MluCI AATT 1 cut(s) 37
MluNI TGGCCA 1 cut(s) 222
MlyI GAGTC 1 cut(s) 608
MmeI TCCRAC 3 cut(s) 237, 260, 363
Mox20I TGGCCA 1 cut(s) 222
MroXI GAANNNNTTC 1 cut(s) 498
MscI TGGCCA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 668
Msp20I TGGCCA 1 cut(s) 222
MspI CCGG 1 cut(s) 588
MspR9I CCNGG 3 cut(s) 224, 588, 589
Mva1269I GAATGC 1 cut(s) 485
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 1 cut(s) 516
NciI CCSGG 2 cut(s) 588, 589
NdeII GATC 2 cut(s) 91, 169
NlaIII CATG 4 cut(s) 289, 377, 452, 574
NlaIV GGNNCC 5 cut(s) 6, 446, 628, 678, 742
NspI RCATGY 1 cut(s) 377
PaeI GCATGC 1 cut(s) 377
PaeR7I CTCGAG 2 cut(s) 368, 439
PcsI WCGNNNNNNNCGW 5 cut(s) 274, 513, 656, 720, 752
PctI GAATGC 1 cut(s) 485
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 4 cut(s) 159, 314, 344, 362
PflFI GACNNNGTC 1 cut(s) 509
PleI GAGTC 1 cut(s) 607
PpsI GAGTC 1 cut(s) 607
PpuMI RGGWCCY 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 474
Psp5II RGGWCCY 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 5 cut(s) 6, 446, 628, 678, 742
PspPI GGNCC 7 cut(s) 138, 260, 388, 409, 445, 511, 626
PspPPI RGGWCCY 1 cut(s) 138
PspXI VCTCGAGB 2 cut(s) 368, 439
PsyI GACNNNGTC 1 cut(s) 509
RsaI GTAC 4 cut(s) 256, 292, 331, 614
RsaNI GTAC 4 cut(s) 255, 291, 330, 613
RseI CAYNNNNRTG 1 cut(s) 668
SacI GAGCTC 1 cut(s) 474
SalI GTCGAC 1 cut(s) 649
Sau3AI GATC 2 cut(s) 91, 169
Sau96I GGNCC 7 cut(s) 138, 260, 388, 409, 445, 511, 626
ScaI AGTACT 1 cut(s) 292
SchI GAGTC 1 cut(s) 608
ScrFI CCNGG 3 cut(s) 224, 588, 589
SduI GDGCHC 3 cut(s) 84, 244, 474
SfaNI GCATC 4 cut(s) 535, 660, 698, 762
SfcI CTRYAG 1 cut(s) 356
Sfr274I CTCGAG 2 cut(s) 368, 439
SgrDI CGTCGACG 1 cut(s) 649
SinI GGWCC 5 cut(s) 138, 260, 409, 445, 511
SlaI CTCGAG 2 cut(s) 368, 439
SmaI CCCGGG 1 cut(s) 589
SmiMI CAYNNNNRTG 1 cut(s) 668
SmlI CTYRAG 2 cut(s) 368, 439
SmoI CTYRAG 2 cut(s) 368, 439
SphI GCATGC 1 cut(s) 377
Sse9I AATT 1 cut(s) 37
SsiI CCGC 2 cut(s) 391, 514
SspMI CTAG 1 cut(s) 264
SstI GAGCTC 1 cut(s) 474
StyD4I CCNGG 3 cut(s) 222, 586, 587
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 3 cut(s) 55, 624, 656
TasI AATT 1 cut(s) 37
TatI WGTACW 1 cut(s) 290
TfiI GAWTC 4 cut(s) 159, 314, 344, 362
TscAI CASTG 1 cut(s) 429
TspDTI ATGAA 1 cut(s) 652
TspGWI ACGGA 2 cut(s) 14, 317
TspMI CCCGGG 1 cut(s) 587
TspRI CASTG 1 cut(s) 429
Tth111I GACNNNGTC 1 cut(s) 509
VpaK11BI GGWCC 5 cut(s) 138, 260, 409, 445, 511
XagI CCTNNNNNAGG 1 cut(s) 133
XceI RCATGY 1 cut(s) 377
XhoI CTCGAG 2 cut(s) 368, 439
XmaI CCCGGG 1 cut(s) 587
XmiI GTMKAC 1 cut(s) 650
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 1 cut(s) 264
ZraI GACGTC 1 cut(s) 654
ZrmI AGTACT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.