Rmu_ssc0000042.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000042.1
OG0000480
Physical Location & Seq
Forward (+)
7957 .. 8292
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000042.1_g000002.1.cds

Sequence Viewer

Length: 336 bp
atggctcgcatcaaatttaccgatgcgaacttacctcagaaagggagctcggagtcaagtggtgagcctatgccttggcaaccgacgcattcaattttggagaaatgcagtgaagcttattctatcccgaagtcagtcaaactttcagccattcctgcagacgcggatatctacacgggtaggaatattcctgatgatgtcttgatcttagctcctgagcacttgcgttatgtcaggttccctattcaccccgtctttcagctcatgtgggccgtgcttggtctgcatccgtttcaacttaatccgaactcctacctcatgttatcttccttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.48

Weight (kDa)

6.39

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 164
AciI CCGC 1 cut(s) 164
AcsI RAATTY 1 cut(s) 14
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 2 cut(s) 93, 296
AluBI AGCT 4 cut(s) 48, 116, 212, 262
AluI AGCT 4 cut(s) 48, 116, 212, 262
Alw21I GWGCWC 2 cut(s) 50, 222
AoxI GGCC 1 cut(s) 270
ApoI RAATTY 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 74, 239
BanII GRGCYC 1 cut(s) 50
Bbv12I GWGCWC 2 cut(s) 50, 222
BceAI ACGGC 1 cut(s) 257
BfmI CTRYAG 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 1 cut(s) 239
BmsI GCATC 3 cut(s) 13, 18, 295
Bpu10I CCTNAGC 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMII CTCAG 2 cut(s) 50, 207
Bsh1236I CGCG 1 cut(s) 164
BshFI GGCC 1 cut(s) 272
BsiHKAI GWGCWC 2 cut(s) 50, 222
BslI CCNNNNNNNGG 1 cut(s) 41
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 1 cut(s) 272
Bsp1286I GDGCHC 2 cut(s) 50, 222
Bsp143I GATC 1 cut(s) 204
BspACI CCGC 1 cut(s) 164
BspANI GGCC 1 cut(s) 272
BspCNI CTCAG 2 cut(s) 49, 208
BspFNI CGCG 1 cut(s) 164
BspLI GGNNCC 1 cut(s) 239
BspMAI CTGCAG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 36, 208, 216
BstENI CCTNNNNNAGG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 286
BstFNI CGCG 1 cut(s) 164
BstKTI GATC 1 cut(s) 207
BstMBI GATC 1 cut(s) 204
BstMWI GCNNNNNNNGC 3 cut(s) 85, 155, 283
BstSFI CTRYAG 1 cut(s) 156
BstUI CGCG 1 cut(s) 164
BsuRI GGCC 1 cut(s) 272
BtsCI GGATG 1 cut(s) 286
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 270
CseI GACGC 2 cut(s) 94, 170
CviAII CATG 2 cut(s) 265, 319
CviJI RGCY 8 cut(s) 5, 48, 67, 116, 149, 212, 262, 272
CviKI_1 RGCY 8 cut(s) 5, 48, 67, 116, 149, 212, 262, 272
DdeI CTNAG 3 cut(s) 36, 208, 216
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
Ecl136II GAGCTC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 74
Eco24I GRGCYC 1 cut(s) 50
Eco32I GATATC 1 cut(s) 169
Eco53kI GAGCTC 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 48
EcoNI CCTNNNNNAGG 1 cut(s) 39
EcoRV GATATC 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 2 cut(s) 268, 322
FaiI YATR 4 cut(s) 71, 231, 266, 320
FatI CATG 2 cut(s) 264, 318
FokI GGATG 1 cut(s) 273
FriOI GRGCYC 1 cut(s) 50
HaeIII GGCC 1 cut(s) 272
HgaI GACGC 2 cut(s) 94, 170
Hin1II CATG 2 cut(s) 268, 322
HindIII AAGCTT 1 cut(s) 114
HinfI GANTC 1 cut(s) 53
HphI GGTGA 2 cut(s) 74, 239
Hpy188I TCNGA 3 cut(s) 39, 52, 306
Hpy188III TCNNGA 4 cut(s) 127, 191, 202, 215
Hpy99I CGWCG 1 cut(s) 88
HpyCH4V TGCA 3 cut(s) 108, 158, 286
HpyF10VI GCNNNNNNNGC 3 cut(s) 85, 155, 283
HpyF3I CTNAG 3 cut(s) 36, 208, 216
Hsp92II CATG 2 cut(s) 268, 322
Kzo9I GATC 1 cut(s) 204
LmnI GCTCC 2 cut(s) 45, 217
LpnPI CCDG 4 cut(s) 168, 204, 220, 228
LweI GCATC 3 cut(s) 13, 18, 295
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 1 cut(s) 318
MhlI GDGCHC 2 cut(s) 50, 222
MluCI AATT 2 cut(s) 14, 93
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 2 cut(s) 45, 326
MseI TTAA 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 88
MvnI CGCG 1 cut(s) 164
MwoI GCNNNNNNNGC 3 cut(s) 85, 155, 283
NdeII GATC 1 cut(s) 204
NlaIII CATG 2 cut(s) 268, 322
NlaIV GGNNCC 1 cut(s) 239
PctI GAATGC 1 cut(s) 88
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp124BI GAGCTC 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 239
PspPI GGNCC 1 cut(s) 270
PstI CTGCAG 1 cut(s) 160
SacI GAGCTC 1 cut(s) 50
SaqAI TTAA 1 cut(s) 300
Sau3AI GATC 1 cut(s) 204
Sau96I GGNCC 1 cut(s) 270
SchI GAGTC 1 cut(s) 62
SduI GDGCHC 2 cut(s) 50, 222
SetI ASST 7 cut(s) 37, 50, 118, 214, 239, 264, 318
SfaNI GCATC 3 cut(s) 13, 18, 295
SfcI CTRYAG 1 cut(s) 156
Sse9I AATT 2 cut(s) 14, 93
SsiI CCGC 1 cut(s) 164
SspI AATATT 1 cut(s) 187
SstI GAGCTC 1 cut(s) 50
StyI CCWWGG 1 cut(s) 74
TasI AATT 2 cut(s) 14, 93
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 1 cut(s) 115
TspGWI ACGGA 1 cut(s) 279
TspRI CASTG 1 cut(s) 115
XagI CCTNNNNNAGG 1 cut(s) 39
XapI RAATTY 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.