Rroxscaffold_1G00044960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000480
Physical Location & Seq
Reverse (-)
64025637 .. 64027241
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00044960.1

Sequence Viewer

Length: 582 bp
ATGAAGGTGTTCGGAGGTTTATCCAATAACTATCGAGGATGGAAATCCGGGGCCTTGTTGATCACCGGTGGATGGCACTCCGAGCTGGATCTTTTGCCCCCGAGAGCGTTCGCAGACGACCTTGGTACGTATCTTGACCCTTTTTCTCCCCGTACCCCTCACGGCGTCCCACCACTTCCGGTTAAAGCAACAACAACGGTTGGACGAGGCGAGTCGCCAACTCAAATCCCGGAAGAGGAGCTTAATGAACAGATGAAAACAATGGTGGACCTAAGTCACCTCCTCGAGGACAAAGATCTTCGGATAGCGACATTGAAAGCCGACTTGGACTTAGTAACTCGGAGCAAGGAGGAGGAGTTCAAGAGAGGGGCTGCTAAGATGAAGCGCGTATCAGCCAAAAATTTTCGGCCGAGGTGGAATCAAGCCCCGACCGAGAGGAGGACGGGTGCTACGTTGGCCCCGACGAATTCGACCATTACTATGGATTTACCCCCATGTGCTACTCTCCCATTCGTGGCATGCTTCCCGGAGACGTTCCCTCCCATGCATCCGGCTCTTCGAAGGCCATGGCCATGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.53

Weight (kDa)

8.95

Isoelectric Point (pI)

59.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 284
AccII CGCG 1 cut(s) 387
AclWI GGATC 1 cut(s) 96
AcoI YGGCCR 2 cut(s) 407, 569
AcsI RAATTY 2 cut(s) 400, 466
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 2 cut(s) 127, 154
AfiI CCNNNNNNNGG 5 cut(s) 72, 235, 286, 438, 514
AgeI ACCGGT 1 cut(s) 65
AgsI TTSAA 2 cut(s) 316, 361
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AloI GAACNNNNNNTCC 2 cut(s) 341, 373
AluBI AGCT 2 cut(s) 85, 241
AluI AGCT 2 cut(s) 85, 241
Alw26I GTCTC 1 cut(s) 524
AlwI GGATC 1 cut(s) 96
Ama87I CYCGRG 2 cut(s) 100, 284
AoxI GGCC 5 cut(s) 51, 407, 456, 563, 569
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 2 cut(s) 400, 466
AsiGI ACCGGT 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 387
AspS9I GGNCC 3 cut(s) 51, 268, 457
AsuC2I CCSGG 3 cut(s) 49, 230, 527
AsuHPI GGTGA 2 cut(s) 55, 269
AsuII TTCGAA 1 cut(s) 559
AvaI CYCGRG 2 cut(s) 100, 284
AvaII GGWCC 1 cut(s) 268
BalI TGGCCA 1 cut(s) 571
BbvI GCAGC 1 cut(s) 358
BccI CCATC 2 cut(s) 33, 66
BceAI ACGGC 1 cut(s) 178
BclI TGATCA 1 cut(s) 60
BcnI CCSGG 3 cut(s) 49, 230, 527
BcoDI GTCTC 1 cut(s) 524
BglII AGATCT 1 cut(s) 295
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
Bme1390I CCNGG 3 cut(s) 49, 230, 527
Bme18I GGWCC 1 cut(s) 268
BmeT110I CYCGRG 2 cut(s) 100, 284
BmgT120I GGNCC 3 cut(s) 51, 268, 457
BmiI GGNNCC 2 cut(s) 52, 459
BmrFI CCNGG 3 cut(s) 49, 230, 527
BmsI GCATC 1 cut(s) 556
BoxI GACNNNNGTC 1 cut(s) 273
Bpu14I TTCGAA 1 cut(s) 559
BpuMI CCSGG 3 cut(s) 49, 230, 527
BsaAI YACGTR 1 cut(s) 129
BsaBI GATNNNNATC 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 5 cut(s) 48, 121, 410, 566, 572
BsaWI WCCGGW 2 cut(s) 65, 178
BsaXI ACNNNNNCTCC 6 cut(s) 341, 371, 430, 460, 523, 553
Bsc4I CCNNNNNNNGG 5 cut(s) 72, 235, 286, 438, 514
Bse118I RCCGGY 1 cut(s) 65
Bse8I GATNNNNATC 1 cut(s) 43
BseDI CCNNGG 5 cut(s) 48, 121, 410, 566, 572
BseGI GGATG 3 cut(s) 44, 77, 547
BseJI GATNNNNATC 1 cut(s) 43
BseLI CCNNNNNNNGG 5 cut(s) 72, 235, 286, 438, 514
BseRI GAGGAG 5 cut(s) 251, 272, 365, 368, 451
BseX3I CGGCCG 1 cut(s) 407
BseXI GCAGC 1 cut(s) 358
Bsh1236I CGCG 1 cut(s) 387
Bsh1285I CGRYCG 2 cut(s) 410, 432
BshFI GGCC 5 cut(s) 53, 409, 458, 565, 571
BshTI ACCGGT 1 cut(s) 65
BsiEI CGRYCG 2 cut(s) 410, 432
BsiHKCI CYCGRG 2 cut(s) 100, 284
BsiSI CCGG 6 cut(s) 48, 66, 179, 230, 527, 551
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 5 cut(s) 72, 235, 286, 438, 514
BsmAI GTCTC 1 cut(s) 524
BsmBI CGTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 5 cut(s) 53, 409, 458, 565, 571
BsoBI CYCGRG 2 cut(s) 100, 284
Bsp119I TTCGAA 1 cut(s) 559
Bsp143I GATC 3 cut(s) 60, 88, 295
Bsp19I CCATGG 2 cut(s) 566, 572
BspANI GGCC 5 cut(s) 53, 409, 458, 565, 571
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 2 cut(s) 52, 459
BspPI GGATC 1 cut(s) 96
BspQI GCTCTTC 1 cut(s) 561
BspT104I TTCGAA 1 cut(s) 559
BsrFI RCCGGY 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 5 cut(s) 48, 121, 410, 566, 572
BssMI GATC 3 cut(s) 60, 88, 295
BssNI GRCGYC 1 cut(s) 165
BssT1I CCWWGG 3 cut(s) 121, 566, 572
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 2 cut(s) 228, 561
BstACI GRCGYC 1 cut(s) 165
BstBAI YACGTR 1 cut(s) 129
BstBI TTCGAA 1 cut(s) 559
BstC8I GCNNGC 1 cut(s) 520
BstDEI CTNAG 3 cut(s) 272, 331, 375
BstDSI CCRYGG 2 cut(s) 566, 572
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 3 cut(s) 44, 77, 547
BstFNI CGCG 1 cut(s) 387
BstHHI GCGC 1 cut(s) 387
BstKTI GATC 3 cut(s) 63, 91, 298
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 3 cut(s) 60, 88, 295
BstMCI CGRYCG 2 cut(s) 410, 432
BstMWI GCNNNNNNNGC 2 cut(s) 82, 455
BstNSI RCATGY 1 cut(s) 522
BstPAI GACNNNNGTC 1 cut(s) 273
BstSCI CCNGG 3 cut(s) 47, 228, 525
BstSNI TACGTA 1 cut(s) 129
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 1 cut(s) 358
BstX2I RGATCY 2 cut(s) 88, 295
BstXI CCANNNNNNTGG 2 cut(s) 481, 573
BstYI RGATCY 2 cut(s) 88, 295
BstZI CGGCCG 1 cut(s) 407
BsuRI GGCC 5 cut(s) 53, 409, 458, 565, 571
BtgI CCRYGG 2 cut(s) 566, 572
BtsCI GGATG 3 cut(s) 44, 77, 547
Cac8I GCNNGC 1 cut(s) 520
CfoI GCGC 1 cut(s) 387
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 51, 268, 457
CseI GACGC 1 cut(s) 154
Csp6I GTAC 2 cut(s) 126, 153
CspAI ACCGGT 1 cut(s) 65
CviAII CATG 5 cut(s) 495, 519, 544, 567, 573
CviQI GTAC 2 cut(s) 126, 153
DdeI CTNAG 3 cut(s) 272, 331, 375
DpnI GATC 3 cut(s) 62, 90, 297
DpnII GATC 3 cut(s) 60, 88, 295
EaeI YGGCCR 2 cut(s) 407, 569
EagI CGGCCG 1 cut(s) 407
Eam1104I CTCTTC 2 cut(s) 228, 561
EarI CTCTTC 2 cut(s) 228, 561
EclXI CGGCCG 1 cut(s) 407
Eco105I TACGTA 1 cut(s) 129
Eco130I CCWWGG 3 cut(s) 121, 566, 572
Eco47I GGWCC 1 cut(s) 268
Eco52I CGGCCG 1 cut(s) 407
Eco88I CYCGRG 2 cut(s) 100, 284
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 466
EcoT14I CCWWGG 3 cut(s) 121, 566, 572
EcoT22I ATGCAT 1 cut(s) 549
ErhI CCWWGG 3 cut(s) 121, 566, 572
Esp3I CGTCTC 1 cut(s) 524
FaeI CATG 5 cut(s) 498, 522, 547, 570, 576
FaiI YATR 6 cut(s) 482, 496, 520, 545, 568, 574
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FaqI GGGAC 1 cut(s) 152
FatI CATG 5 cut(s) 494, 518, 543, 566, 572
FbaI TGATCA 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 372
FokI GGATG 3 cut(s) 51, 84, 534
Fsp4HI GCNGC 1 cut(s) 372
GlaI GCGC 1 cut(s) 386
GluI GCNGC 1 cut(s) 372
HaeIII GGCC 5 cut(s) 53, 409, 458, 565, 571
HapII CCGG 6 cut(s) 48, 66, 179, 230, 527, 551
HgaI GACGC 1 cut(s) 154
HhaI GCGC 1 cut(s) 387
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 5 cut(s) 498, 522, 547, 570, 576
Hin6I GCGC 1 cut(s) 385
HinP1I GCGC 1 cut(s) 385
HinfI GANTC 2 cut(s) 212, 418
HpaII CCGG 6 cut(s) 48, 66, 179, 230, 527, 551
HphI GGTGA 2 cut(s) 55, 269
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 4 cut(s) 14, 82, 303, 342
Hpy188III TCNNGA 2 cut(s) 134, 361
Hpy8I GTNNAC 1 cut(s) 268
Hpy99I CGWCG 1 cut(s) 466
HpyAV CCTTC 1 cut(s) 555
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 3 cut(s) 128, 452, 533
HpyCH4V TGCA 1 cut(s) 547
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 455
HpyF3I CTNAG 3 cut(s) 272, 331, 375
HpySE526I ACGT 3 cut(s) 128, 452, 533
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 5 cut(s) 498, 522, 547, 570, 576
HspAI GCGC 1 cut(s) 385
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 3 cut(s) 60, 88, 295
LguI GCTCTTC 1 cut(s) 561
LmnI GCTCC 2 cut(s) 238, 342
LpnPI CCDG 7 cut(s) 61, 71, 79, 192, 243, 540, 564
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 1 cut(s) 556
MaeII ACGT 3 cut(s) 128, 452, 533
MaeIII GTNAC 2 cut(s) 275, 334
MalI GATC 3 cut(s) 62, 90, 297
MboI GATC 3 cut(s) 60, 88, 295
MboII GAAGA 3 cut(s) 245, 290, 548
MflI RGATCY 2 cut(s) 88, 295
MlsI TGGCCA 1 cut(s) 571
MluCI AATT 2 cut(s) 400, 466
MluNI TGGCCA 1 cut(s) 571
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 181
Mox20I TGGCCA 1 cut(s) 571
Mph1103I ATGCAT 1 cut(s) 549
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 571
MseI TTAA 2 cut(s) 183, 243
MslI CAYNNNNRTG 3 cut(s) 479, 571, 577
Msp20I TGGCCA 1 cut(s) 571
MspI CCGG 6 cut(s) 48, 66, 179, 230, 527, 551
MspR9I CCNGG 3 cut(s) 49, 230, 527
MvnI CGCG 1 cut(s) 387
MwoI GCNNNNNNNGC 2 cut(s) 82, 455
NciI CCSGG 3 cut(s) 49, 230, 527
NcoI CCATGG 2 cut(s) 566, 572
NdeII GATC 3 cut(s) 60, 88, 295
NlaIII CATG 5 cut(s) 498, 522, 547, 570, 576
NlaIV GGNNCC 2 cut(s) 52, 459
NmeAIII GCCGAG 1 cut(s) 435
NmuCI GTSAC 1 cut(s) 275
NsiI ATGCAT 1 cut(s) 549
NspI RCATGY 1 cut(s) 522
NspV TTCGAA 1 cut(s) 559
PaeI GCATGC 1 cut(s) 522
PaeR7I CTCGAG 1 cut(s) 284
PciSI GCTCTTC 1 cut(s) 561
PcsI WCGNNNNNNNCGW 2 cut(s) 449, 458
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 418
PfoI TCCNGGA 2 cut(s) 228, 525
PinAI ACCGGT 1 cut(s) 65
PkrI GCNGC 1 cut(s) 373
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
Ppu21I YACGTR 1 cut(s) 129
PshAI GACNNNNGTC 1 cut(s) 273
PspN4I GGNNCC 2 cut(s) 52, 459
PspPI GGNCC 3 cut(s) 51, 268, 457
PspXI VCTCGAGB 1 cut(s) 284
PsuI RGATCY 2 cut(s) 88, 295
RsaI GTAC 2 cut(s) 127, 154
RsaNI GTAC 2 cut(s) 126, 153
RseI CAYNNNNRTG 3 cut(s) 479, 571, 577
SapI GCTCTTC 1 cut(s) 561
SaqAI TTAA 2 cut(s) 183, 243
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 3 cut(s) 60, 88, 295
Sau96I GGNCC 3 cut(s) 51, 268, 457
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 3 cut(s) 49, 230, 527
SfaNI GCATC 1 cut(s) 556
Sfr274I CTCGAG 1 cut(s) 284
SfuI TTCGAA 1 cut(s) 559
SgrAI CRCCGGYG 1 cut(s) 65
SinI GGWCC 1 cut(s) 268
SlaI CTCGAG 1 cut(s) 284
SmiMI CAYNNNNRTG 3 cut(s) 479, 571, 577
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SnaBI TACGTA 1 cut(s) 129
SphI GCATGC 1 cut(s) 522
Sse9I AATT 2 cut(s) 400, 466
StyD4I CCNGG 3 cut(s) 47, 228, 525
StyI CCWWGG 3 cut(s) 121, 566, 572
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 3 cut(s) 131, 455, 536
TaqI TCGA 4 cut(s) 34, 285, 470, 559
TaqII GACCGA 1 cut(s) 446
TasI AATT 2 cut(s) 400, 466
TfiI GAWTC 1 cut(s) 418
Tru1I TTAA 2 cut(s) 183, 243
Tru9I TTAA 2 cut(s) 183, 243
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 4 cut(s) 17, 261, 269, 395
VpaK11BI GGWCC 1 cut(s) 268
XagI CCTNNNNNAGG 1 cut(s) 284
XapI RAATTY 2 cut(s) 400, 466
XceI RCATGY 1 cut(s) 522
XhoI CTCGAG 1 cut(s) 284
XmnI GAANNNNTTC 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.