Rmu_co8495873.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8495873.1
OG0000480
Physical Location & Seq
Forward (+)
1 .. 1606
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8495873.1_g000001.1.cds

Sequence Viewer

Length: 759 bp
ccccaagctctggaattgagatttaagaagcgtgataactctttcgtcatagccaaaaagtccttggactctaatggttcagcggcgtcggccattgcaggcgccttcgtgtcatcgaccctgagatcgtgtaggcctcccaagagtgctatggaattttatgatgacctttgctattcccagctcgatgccctcatggagtctcatcgttttttgcatagtctcgacgcccttcactccaggcaacaacaacgtcttgagaaggctaaccaagagttaaaatccaatgagaaggaactcaatgaccaaatggaatcaatgatgcagctgagccttatcctcaaggacataaaccgcgaggtagcgaagttgaaaaacgatttggctttggtaactcgaagtaaggacgaggagtttgaaaagagggtcactaaaatgaagcgtgtgtcagctaaacacttccgtctagaatggaaccaggctttgaccaaggaagatgatagatgctacgtagggcctgatgaatttgatcgcttttatgggtttgccctcagggactactctcccattcgtgggggattcgctgatttcgacacttgccagttccttgaagatgtgctggactattctgacgatgtagaggcgagtgttcctcgttccccgaggactggtgctagtcctagtctccctcttcgtcagagcatgagtactgatagaggaacaagtcccgaatctcatcacctccaaactctgagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

28.87

Weight (kDa)

6.38

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 10
AccII CGCG 1 cut(s) 357
AciI CCGC 2 cut(s) 83, 355
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 2 cut(s) 155, 524
AcyI GRCGYC 3 cut(s) 86, 102, 228
AfaI GTAC 1 cut(s) 709
AfiI CCNNNNNNNGG 4 cut(s) 10, 572, 573, 668
AgsI TTSAA 3 cut(s) 373, 419, 611
AjnI CCWGG 2 cut(s) 239, 477
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
AluBI AGCT 4 cut(s) 8, 184, 328, 452
AluI AGCT 4 cut(s) 8, 184, 328, 452
Alw26I GTCTC 3 cut(s) 207, 227, 689
Ama87I CYCGRG 1 cut(s) 661
AoxI GGCC 3 cut(s) 90, 134, 515
ApeKI GCWGC 1 cut(s) 325
ApoI RAATTY 2 cut(s) 155, 524
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 515
AsuHPI GGTGA 1 cut(s) 731
AvaI CYCGRG 1 cut(s) 661
AxyI CCTNAGG 1 cut(s) 551
BanI GGYRCC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 337
BciT130I CCWGG 2 cut(s) 241, 479
BcoDI GTCTC 3 cut(s) 207, 227, 689
BfaI CTAG 3 cut(s) 467, 675, 681
BfoI RGCGCY 1 cut(s) 105
BisI GCNGC 2 cut(s) 84, 326
BlpI GCTNAGC 1 cut(s) 329
BlsI GCNGC 2 cut(s) 85, 327
BmcAI AGTACT 1 cut(s) 709
Bme1390I CCNGG 2 cut(s) 241, 479
BmeT110I CYCGRG 1 cut(s) 661
BmgT120I GGNCC 1 cut(s) 515
BmiI GGNNCC 2 cut(s) 103, 476
BmrFI CCNGG 2 cut(s) 241, 479
BmsI GCATC 3 cut(s) 178, 312, 494
BplI GAGNNNNNCTC 2 cut(s) 637, 669
BpmI CTGGAG 1 cut(s) 223
Bpu1102I GCTNAGC 1 cut(s) 329
BpuEI CTTGAG 2 cut(s) 278, 326
BsaAI YACGTR 1 cut(s) 511
BsaHI GRCGYC 3 cut(s) 86, 102, 228
BsaJI CCNNGG 3 cut(s) 63, 489, 662
Bsc4I CCNNNNNNNGG 4 cut(s) 10, 572, 573, 668
Bse1I ACTGG 2 cut(s) 601, 673
Bse21I CCTNAGG 1 cut(s) 551
Bse3DI GCAATG 1 cut(s) 93
BseBI CCWGG 2 cut(s) 241, 479
BseDI CCNNGG 3 cut(s) 63, 489, 662
BseLI CCNNNNNNNGG 4 cut(s) 10, 572, 573, 668
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 4 cut(s) 113, 320, 565, 743
BseNI ACTGG 2 cut(s) 601, 673
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 1 cut(s) 337
BseYI CCCAGC 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 357
BshFI GGCC 3 cut(s) 92, 136, 517
BshNI GGYRCC 1 cut(s) 101
BsiHKCI CYCGRG 1 cut(s) 661
BslFI GGGAC 2 cut(s) 569, 711
BslI CCNNNNNNNGG 4 cut(s) 10, 572, 573, 668
BsmAI GTCTC 3 cut(s) 207, 227, 689
BsmFI GGGAC 2 cut(s) 569, 711
BsnI GGCC 3 cut(s) 92, 136, 517
BsoBI CYCGRG 1 cut(s) 661
Bsp143I GATC 2 cut(s) 125, 529
Bsp1720I GCTNAGC 1 cut(s) 329
BspACI CCGC 2 cut(s) 83, 355
BspANI GGCC 3 cut(s) 92, 136, 517
BspCNI CTCAG 4 cut(s) 114, 321, 564, 744
BspFNI CGCG 1 cut(s) 357
BspLI GGNNCC 2 cut(s) 103, 476
BspT107I GGYRCC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 2 cut(s) 601, 673
BssECI CCNNGG 3 cut(s) 63, 489, 662
BssMI GATC 2 cut(s) 125, 529
BssNI GRCGYC 3 cut(s) 86, 102, 228
BssT1I CCWWGG 2 cut(s) 63, 489
Bst2UI CCWGG 2 cut(s) 241, 479
Bst6I CTCTTC 1 cut(s) 696
BstACI GRCGYC 3 cut(s) 86, 102, 228
BstBAI YACGTR 1 cut(s) 511
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 4 cut(s) 122, 329, 551, 752
BstFNI CGCG 1 cut(s) 357
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 2 cut(s) 128, 532
BstMAI GTCTC 3 cut(s) 207, 227, 689
BstMBI GATC 2 cut(s) 125, 529
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 2 cut(s) 241, 479
BstSCI CCNGG 2 cut(s) 239, 477
BstSNI TACGTA 1 cut(s) 511
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 1 cut(s) 337
Bsu36I CCTNAGG 1 cut(s) 551
BsuRI GGCC 3 cut(s) 92, 136, 517
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 515
CseI GACGC 2 cut(s) 75, 236
Csp6I GTAC 1 cut(s) 708
CviAII CATG 2 cut(s) 196, 703
CviQI GTAC 1 cut(s) 708
DdeI CTNAG 4 cut(s) 122, 329, 551, 752
DinI GGCGCC 1 cut(s) 103
DpnI GATC 2 cut(s) 127, 531
DpnII GATC 2 cut(s) 125, 529
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 696
EarI CTCTTC 1 cut(s) 696
Eco105I TACGTA 1 cut(s) 511
Eco130I CCWWGG 2 cut(s) 63, 489
Eco147I AGGCCT 1 cut(s) 136
Eco81I CCTNAGG 1 cut(s) 551
Eco88I CYCGRG 1 cut(s) 661
EcoO109I RGGNCCY 1 cut(s) 515
EcoRII CCWGG 2 cut(s) 239, 477
EcoT14I CCWWGG 2 cut(s) 63, 489
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
ErhI CCWWGG 2 cut(s) 63, 489
FaeI CATG 2 cut(s) 199, 706
FaiI YATR 8 cut(s) 50, 152, 162, 197, 219, 350, 540, 704
FaqI GGGAC 2 cut(s) 569, 711
FatI CATG 2 cut(s) 195, 702
Fnu4HI GCNGC 2 cut(s) 84, 326
Fsp4HI GCNGC 2 cut(s) 84, 326
FspBI CTAG 3 cut(s) 467, 675, 681
GlaI GCGC 1 cut(s) 103
GluI GCNGC 2 cut(s) 84, 326
GsaI CCCAGC 1 cut(s) 184
GsuI CTGGAG 1 cut(s) 223
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 3 cut(s) 92, 136, 517
HgaI GACGC 2 cut(s) 75, 236
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 3 cut(s) 86, 102, 228
Hin1II CATG 2 cut(s) 199, 706
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 5 cut(s) 68, 200, 314, 579, 731
HphI GGTGA 1 cut(s) 731
Hpy188I TCNGA 3 cut(s) 631, 699, 753
Hpy188III TCNNGA 5 cut(s) 11, 224, 257, 467, 728
Hpy99I CGWCG 2 cut(s) 91, 230
HpyAV CCTTC 4 cut(s) 115, 242, 256, 286
HpyCH4IV ACGT 2 cut(s) 253, 510
HpyCH4V TGCA 3 cut(s) 98, 217, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 4 cut(s) 122, 329, 551, 752
HpySE526I ACGT 2 cut(s) 253, 510
Hsp92I GRCGYC 3 cut(s) 86, 102, 228
Hsp92II CATG 2 cut(s) 199, 706
HspAI GCGC 1 cut(s) 102
KasI GGCGCC 1 cut(s) 101
Kzo9I GATC 2 cut(s) 125, 529
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 3 cut(s) 178, 312, 494
MaeI CTAG 3 cut(s) 467, 675, 681
MaeII ACGT 2 cut(s) 253, 510
MaeIII GTNAC 2 cut(s) 391, 427
MalI GATC 2 cut(s) 127, 531
MboI GATC 2 cut(s) 125, 529
MboII GAAGA 3 cut(s) 506, 623, 683
MluCI AATT 3 cut(s) 14, 155, 524
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 2 cut(s) 62, 209
MseI TTAA 2 cut(s) 24, 278
MslI CAYNNNNRTG 1 cut(s) 434
MspA1I CMGCKG 2 cut(s) 83, 328
MspR9I CCNGG 2 cut(s) 241, 479
MvaI CCWGG 2 cut(s) 241, 479
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 1 cut(s) 89
NarI GGCGCC 1 cut(s) 102
NdeII GATC 2 cut(s) 125, 529
NlaIII CATG 2 cut(s) 199, 706
NlaIV GGNNCC 2 cut(s) 103, 476
NmuCI GTSAC 1 cut(s) 427
PceI AGGCCT 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 588
PfeI GAWTC 3 cut(s) 314, 579, 731
PflMI CCANNNNNTGG 1 cut(s) 10
PkrI GCNGC 2 cut(s) 85, 327
PleI GAGTC 2 cut(s) 62, 208
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 2 cut(s) 62, 208
Ppu21I YACGTR 1 cut(s) 511
Psp6I CCWGG 2 cut(s) 239, 477
PspFI CCCAGC 1 cut(s) 180
PspGI CCWGG 2 cut(s) 239, 477
PspN4I GGNNCC 2 cut(s) 103, 476
PspPI GGNCC 1 cut(s) 515
PvuII CAGCTG 1 cut(s) 328
RsaI GTAC 1 cut(s) 709
RsaNI GTAC 1 cut(s) 708
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 2 cut(s) 24, 278
SatI GCNGC 2 cut(s) 84, 326
Sau3AI GATC 2 cut(s) 125, 529
Sau96I GGNCC 1 cut(s) 515
ScaI AGTACT 1 cut(s) 709
SchI GAGTC 2 cut(s) 62, 209
ScrFI CCNGG 2 cut(s) 241, 479
SetI ASST 9 cut(s) 10, 171, 186, 256, 330, 363, 454, 513, 744
SfaNI GCATC 3 cut(s) 178, 312, 494
SfoI GGCGCC 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 2 cut(s) 257, 341
SmoI CTYRAG 2 cut(s) 257, 341
SnaBI TACGTA 1 cut(s) 511
Sse9I AATT 3 cut(s) 14, 155, 524
SseBI AGGCCT 1 cut(s) 136
SsiI CCGC 2 cut(s) 83, 355
SspDI GGCGCC 1 cut(s) 101
SspMI CTAG 3 cut(s) 467, 675, 681
StuI AGGCCT 1 cut(s) 136
StyD4I CCNGG 2 cut(s) 239, 477
StyI CCWWGG 2 cut(s) 63, 489
TaiI ACGT 2 cut(s) 256, 513
TaqI TCGA 5 cut(s) 116, 186, 225, 397, 591
TasI AATT 3 cut(s) 14, 155, 524
TatI WGTACW 1 cut(s) 707
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 3 cut(s) 314, 579, 731
Tru1I TTAA 2 cut(s) 24, 278
Tru9I TTAA 2 cut(s) 24, 278
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 1 cut(s) 325
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 2 cut(s) 452, 537
TspGWI ACGGA 1 cut(s) 452
Van91I CCANNNNNTGG 1 cut(s) 10
XapI RAATTY 2 cut(s) 155, 524
XbaI TCTAGA 1 cut(s) 466
XcmI CCANNNNNNNNNTGG 2 cut(s) 61, 148
XspI CTAG 3 cut(s) 467, 675, 681
ZrmI AGTACT 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.