Rmu_sc0010871.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010871.1
OG0000480
Physical Location & Seq
Forward (+)
53381 .. 53650
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010871.1_g000012.1.cds

Sequence Viewer

Length: 270 bp
atgtcagaggtccgtaagctgaaggcggagattcgcgatttgtctgcggaggttcagcattccaaagatcatgctgaacacctaaaaattgagctacgcaaatgctacaggcgggagaggttcttagacgaagtcagggttcaaagtcgtgaagatggctaccgtgatgcggtgatcgaatatcgtcagcgcatgattatgaacttcccggagattaaccgatctcttttgccatattatgtgggacctgatggcattcctcgattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.79

Weight (kDa)

8.82

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 36
AciI CCGC 4 cut(s) 26, 47, 112, 170
AcuI CTGAAG 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 1 cut(s) 143
AluBI AGCT 2 cut(s) 19, 94
AluI AGCT 2 cut(s) 19, 94
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 2 cut(s) 10, 245
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 184
AvaII GGWCC 2 cut(s) 10, 245
BccI CCATC 2 cut(s) 149, 245
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BcnI CCSGG 1 cut(s) 209
BfmI CTRYAG 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 209
Bme18I GGWCC 2 cut(s) 10, 245
BmgT120I GGNCC 2 cut(s) 10, 245
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 157
BpuMI CCSGG 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 169
Bsh1236I CGCG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 209
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 258
BsmI GAATGC 2 cut(s) 58, 255
Bsp143I GATC 3 cut(s) 67, 174, 221
Bsp68I TCGCGA 1 cut(s) 36
BspACI CCGC 4 cut(s) 26, 47, 112, 170
BspFNI CGCG 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 246
BssMI GATC 3 cut(s) 67, 174, 221
Bst4CI ACNGT 1 cut(s) 164
BstDEI CTNAG 1 cut(s) 124
BstFNI CGCG 1 cut(s) 36
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 3 cut(s) 70, 177, 224
BstMBI GATC 3 cut(s) 67, 174, 221
BstSCI CCNGG 1 cut(s) 207
BstSFI CTRYAG 1 cut(s) 106
BstUI CGCG 1 cut(s) 36
BtuMI TCGCGA 1 cut(s) 36
CfoI GCGC 1 cut(s) 192
Cfr13I GGNCC 2 cut(s) 10, 245
CviAII CATG 2 cut(s) 71, 193
CviJI RGCY 3 cut(s) 19, 94, 159
CviKI_1 RGCY 3 cut(s) 19, 94, 159
DdeI CTNAG 1 cut(s) 124
DpnI GATC 3 cut(s) 69, 176, 223
DpnII GATC 3 cut(s) 67, 174, 221
EciI GGCGGA 1 cut(s) 41
Eco47I GGWCC 2 cut(s) 10, 245
Eco57I CTGAAG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 245
FaeI CATG 2 cut(s) 74, 196
FaiI YATR 5 cut(s) 72, 194, 200, 235, 240
FaqI GGGAC 1 cut(s) 258
FatI CATG 2 cut(s) 70, 192
FauI CCCGC 1 cut(s) 105
GlaI GCGC 1 cut(s) 191
HapII CCGG 1 cut(s) 209
HhaI GCGC 1 cut(s) 192
Hin1II CATG 2 cut(s) 74, 196
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HinfI GANTC 1 cut(s) 31
HpaII CCGG 1 cut(s) 209
HphI GGTGA 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 2 cut(s) 35, 149
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 124
Hsp92II CATG 2 cut(s) 74, 196
HspAI GCGC 1 cut(s) 190
Kzo9I GATC 3 cut(s) 67, 174, 221
LpnPI CCDG 4 cut(s) 94, 121, 222, 261
LweI GCATC 1 cut(s) 157
MalI GATC 3 cut(s) 69, 176, 223
MboI GATC 3 cut(s) 67, 174, 221
MboII GAAGA 1 cut(s) 164
MluCI AATT 1 cut(s) 87
MnlI CCTC 3 cut(s) 43, 111, 270
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 197
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 209
Mva1269I GAATGC 2 cut(s) 58, 255
MvnI CGCG 1 cut(s) 36
NciI CCSGG 1 cut(s) 209
NdeII GATC 3 cut(s) 67, 174, 221
NlaIII CATG 2 cut(s) 74, 196
NlaIV GGNNCC 1 cut(s) 246
NruI TCGCGA 1 cut(s) 36
PctI GAATGC 2 cut(s) 58, 255
PfeI GAWTC 1 cut(s) 31
PflFI GACNNNGTC 1 cut(s) 131
PfoI TCCNGGA 1 cut(s) 207
PpuMI RGGWCCY 1 cut(s) 245
Psp5II RGGWCCY 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 2 cut(s) 10, 245
PspPPI RGGWCCY 1 cut(s) 245
PsyI GACNNNGTC 1 cut(s) 131
RruI TCGCGA 1 cut(s) 36
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 1 cut(s) 216
Sau3AI GATC 3 cut(s) 67, 174, 221
Sau96I GGNCC 2 cut(s) 10, 245
ScrFI CCNGG 1 cut(s) 209
SetI ASST 7 cut(s) 12, 21, 54, 84, 96, 122, 250
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 106
SinI GGWCC 2 cut(s) 10, 245
SmiMI CAYNNNNRTG 1 cut(s) 197
Sse9I AATT 1 cut(s) 87
SsiI CCGC 4 cut(s) 26, 47, 112, 170
StyD4I CCNGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 164
TaqI TCGA 2 cut(s) 177, 262
TasI AATT 1 cut(s) 87
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TspDTI ATGAA 1 cut(s) 215
Tth111I GACNNNGTC 1 cut(s) 131
VpaK11BI GGWCC 2 cut(s) 10, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.