Rmu_sc0000950.1_g000030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000950.1
OG0000480
Physical Location & Seq
Reverse (-)
100711 .. 101114
404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000950.1_g000030.1.cds

Sequence Viewer

Length: 318 bp
ctggaattgagatttaagaagcgtgataactctttcgtcacggccgtacagtccttagactccaatggtttggcggcgtcagccattgccggtgccttggcgacatcgaatccaagatcgggtaggcctcccaagagcgctatggagttctatgatgacctatgttcctctcagcttgatgccctcatggcgtctcatcgttttttgtgtagtctcgacgctcttcattccaggcagcaacaacgccttgagaaagccgaccaagagctaaaatccaaggagaatgaactaaacgaccaaatggagtcaatgacgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.66

Weight (kDa)

5.64

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AciI CCGC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 42
AcyI GRCGYC 2 cut(s) 77, 191
AfaI GTAC 1 cut(s) 48
AfeI AGCGCT 1 cut(s) 139
AfiI CCNNNNNNNGG 1 cut(s) 119
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 2 cut(s) 175, 268
AluI AGCT 2 cut(s) 175, 268
Alw26I GTCTC 2 cut(s) 198, 218
Aor51HI AGCGCT 1 cut(s) 139
AoxI GGCC 2 cut(s) 42, 125
ApeKI GCWGC 1 cut(s) 235
AspLEI GCGC 1 cut(s) 140
BanI GGYRCC 1 cut(s) 92
BbvI GCAGC 1 cut(s) 247
BceAI ACGGC 2 cut(s) 29, 57
BciT130I CCWGG 1 cut(s) 232
BcoDI GTCTC 2 cut(s) 198, 218
BfoI RGCGCY 1 cut(s) 141
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 2 cut(s) 75, 236
BlsI GCNGC 2 cut(s) 76, 237
Bme1390I CCNGG 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 232
BmsI GCATC 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 269
BsaHI GRCGYC 2 cut(s) 77, 191
BsaJI CCNNGG 2 cut(s) 96, 276
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse118I RCCGGY 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 96, 276
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 185
BseX3I CGGCCG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 247
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 2 cut(s) 44, 127
BshNI GGYRCC 1 cut(s) 92
BsiEI CGRYCG 1 cut(s) 45
BsiSI CCGG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 2 cut(s) 198, 218
BsmBI CGTCTC 1 cut(s) 198
BsnI GGCC 2 cut(s) 44, 127
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 1 cut(s) 74
BspANI GGCC 2 cut(s) 44, 127
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 94
BspQI GCTCTTC 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 84
BsrFI RCCGGY 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 96, 276
BssMI GATC 1 cut(s) 116
BssNI GRCGYC 2 cut(s) 77, 191
BssT1I CCWWGG 2 cut(s) 96, 276
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 228
BstACI GRCGYC 2 cut(s) 77, 191
BstDEI CTNAG 2 cut(s) 55, 171
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 1 cut(s) 119
BstMAI GTCTC 2 cut(s) 198, 218
BstMBI GATC 1 cut(s) 116
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 2 cut(s) 80, 188
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 247
BstXI CCANNNNNNTGG 1 cut(s) 70
BstZI CGGCCG 1 cut(s) 42
BsuRI GGCC 2 cut(s) 44, 127
CfoI GCGC 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 89
CseI GACGC 3 cut(s) 66, 180, 227
Csp6I GTAC 1 cut(s) 47
CviAII CATG 1 cut(s) 187
CviJI RGCY 6 cut(s) 44, 83, 127, 175, 257, 268
CviKI_1 RGCY 6 cut(s) 44, 83, 127, 175, 257, 268
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 2 cut(s) 55, 171
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 42
EagI CGGCCG 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
EclXI CGGCCG 1 cut(s) 42
Eco130I CCWWGG 2 cut(s) 96, 276
Eco147I AGGCCT 1 cut(s) 127
Eco47III AGCGCT 1 cut(s) 139
Eco52I CGGCCG 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 230
EcoT14I CCWWGG 2 cut(s) 96, 276
ErhI CCWWGG 2 cut(s) 96, 276
Esp3I CGTCTC 1 cut(s) 198
FaeI CATG 1 cut(s) 190
FaiI YATR 4 cut(s) 143, 153, 163, 188
FatI CATG 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 75, 236
Fsp4HI GCNGC 2 cut(s) 75, 236
GlaI GCGC 1 cut(s) 139
GluI GCNGC 2 cut(s) 75, 236
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 2 cut(s) 44, 127
HapII CCGG 1 cut(s) 90
HgaI GACGC 3 cut(s) 66, 180, 227
HhaI GCGC 1 cut(s) 140
Hin1I GRCGYC 2 cut(s) 77, 191
Hin1II CATG 1 cut(s) 190
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 3 cut(s) 59, 109, 305
HpaII CCGG 1 cut(s) 90
Hpy188III TCNNGA 1 cut(s) 215
Hpy99I CGWCG 1 cut(s) 221
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 188
HpyF3I CTNAG 2 cut(s) 55, 171
HpySE526I ACGT 1 cut(s) 314
Hsp92I GRCGYC 2 cut(s) 77, 191
Hsp92II CATG 1 cut(s) 190
HspAI GCGC 1 cut(s) 138
Kzo9I GATC 1 cut(s) 116
LguI GCTCTTC 1 cut(s) 228
LpnPI CCDG 3 cut(s) 103, 217, 244
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 1 cut(s) 169
MaeII ACGT 1 cut(s) 314
MaeIII GTNAC 1 cut(s) 37
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 1 cut(s) 215
MluCI AATT 1 cut(s) 5
MlyI GAGTC 2 cut(s) 53, 314
MnlI CCTC 3 cut(s) 138, 178, 194
MseI TTAA 1 cut(s) 15
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 232
MvaI CCWGG 1 cut(s) 232
MwoI GCNNNNNNNGC 2 cut(s) 80, 188
NdeII GATC 1 cut(s) 116
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 37
PceI AGGCCT 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 2 cut(s) 76, 237
PleI GAGTC 2 cut(s) 53, 313
PpsI GAGTC 2 cut(s) 53, 313
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 94
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 2 cut(s) 75, 236
Sau3AI GATC 1 cut(s) 116
SchI GAGTC 2 cut(s) 53, 314
ScrFI CCNGG 1 cut(s) 232
SetI ASST 4 cut(s) 162, 177, 270, 317
SfaNI GCATC 1 cut(s) 169
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 1 cut(s) 5
SseBI AGGCCT 1 cut(s) 127
SsiI CCGC 1 cut(s) 74
StuI AGGCCT 1 cut(s) 127
StyD4I CCNGG 1 cut(s) 230
StyI CCWWGG 2 cut(s) 96, 276
TaaI ACNGT 1 cut(s) 51
TaiI ACGT 1 cut(s) 317
TaqI TCGA 2 cut(s) 107, 216
TasI AATT 1 cut(s) 5
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 215, 300
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.