Rh6CG058900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000480
Physical Location & Seq
Reverse (-)
5847065 .. 5849900
2836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG058900.1

Sequence Viewer

Length: 1761 bp
ATGGCAAGAGAAACTAGGTCTTCGAAGAGAGCTGGGCAGAACCCCAGTAGTGAACATCATAAAGCTGATGAGATTGTGTTCTGGAAACCAAAAGACTTCCAAATCCAACGGGTGAGGAATAATTTTGTGAATTCGAACCGAGTTTCCGTCCATGCAATTCCCGAAGGGGCTAATATTTTCACCGGCGAAAATATTCCTGAAAATGCCCTCGTGGTCTCTTCTCACCATCTTAGGTTCTTGAAATTTCCTCTTCATCCTATATTCCAAATCTTGTGGCGTGTTACTGGCTTGCATCCTATGCAATTCAATCCCATTTCATACATGCTGCTCTGCGGGTTATTAGTCATGGGCATGAAGTGGGAAGTATCATTGGGCCTAGGCGACTTCTTTTATTTTCATAGATGCGGCCGTATTTTCGAAAAGGCTCTGTTTTTCCACTTTTCTCCTCGTCCACAAAGGAAAGTCTTTGAAGAAAAGATGGGTAACGTCACCGGGTGGAAAAATGAGCCGCTAATGGTTCTTGGCGAGTGGGCAGCGCCAGAGCTTTCCATGGACGTTCCTAAAGTCTTCTCTAAGGAGATCGAATATAAGCCTTGTTCTATGGATTCCATTTTGGATGAGTCTCGTATGACGTGGTTGAAAGAACACGTATTGCGTCGGGGCTGGAATGCGGCTCAGTTTTGCTCCAGTGCTGACCTAGAGGACATTTCTAATTGTCGATCAGGACCAATCTATTGTTCGTGTCTGCAATTGTTGGAGCCTAATCTCCGAGGAGAAAGGCTGTTCAATCGTGTCGTCGAGTTAGAAAGCAATTTTCTGACTTCTGAACGCACTCCCACTTTATTTGCAGAGAGTCTCAAGGTTGGAGATTCGTTTGAAGAGCCGGAAAATCTTGAAGAGGACGACATGGACATCAAGCGCATAAAAGTTCCTAATCCACAAGGGAAAAAGTCCAAGAAACAGAAGTTGTCTCAAGCCGAAAGCGAGATTACCCATAGAAGCGAAGGAGGACTTGAGCTGCCTCAAACGCCTCAGATTCAGCCGTCGCCATGCAAATCTTCTCCTGGTTCCCTGGTGGCCTCTTCGTCCAACACTACTTTTCAAGGTTCTGGGAACATGTCACTACCACCCCTGAAGGCTCCATTGCAGTTAACATTTAGAAAGGAAGATGACTCTTATGTGTTGGAGGGAGATCCCATTGCTTTCGATAAAGAAGCATGCTTGGCAGTGGCACAGGCCTTGGCTCTGAACCCCATTGATCATGAAAGGCTTATGGGATTGAGCCAGCGAGATCTTGCAGCGCAGGTGGCCCTTAGCCTGCAATCGGCCTCATCAATGACTCAACATCTCTTGATGCGGACGGAAGCTGCTGAGGATAGGTTGTGGAGCCTCATACATAAGGCTAAGCAAGAGACTCAGAAGGCTGCGGACGAGCTGAAGGTGTTGCGCGAGGTTGTTGCAAAGAAATCCAAAGAAGTTGAGGACAGGAATAAGAAGATTGATGAGTTGAATGCTAAATTGTCAAAGGAGACTGCAAACAGGGCGAAAGAGTTTGAGTTGAACCAGAGCCAAGTTACTAAATGTTCTTGCAAAAGCTTCCGACTAGGATGGGTCCAAGGTCAGCAAAAAGAGGAAGACAGGATTTTTGAAGGGCCTGATGCATTCGATGAGGAAATGGGGTTGAAGTATTCTGACTATGAGTGGATACATGGGATGAGACCTGAGGACAAACCTTCTTCGGATGATGCTAATGAAGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

586

Amino Acids

66.64

Weight (kDa)

6.01

Isoelectric Point (pI)

46.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1294
Acc36I ACCTGC 1 cut(s) 1294
AccII CGCG 1 cut(s) 1449
AciI CCGC 6 cut(s) 333, 405, 509, 671, 1357, 1427
AclWI GGATC 1 cut(s) 1187
AcoI YGGCCR 1 cut(s) 406
AcsI RAATTY 2 cut(s) 130, 242
AcuI CTGAAG 2 cut(s) 1154, 1457
AdeI CACNNNGTG 1 cut(s) 495
AfiI CCNNNNNNNGG 1 cut(s) 1324
AflIII ACRYGT 2 cut(s) 646, 1116
AjiI CACGTC 1 cut(s) 633
AjnI CCWGG 2 cut(s) 1063, 1071
AjuI GAANNNNNNNTTGG 2 cut(s) 721, 753
AloI GAACNNNNNNTCC 2 cut(s) 128, 160
AluBI AGCT 7 cut(s) 32, 65, 544, 1018, 1367, 1435, 1596
AluI AGCT 7 cut(s) 32, 65, 544, 1018, 1367, 1435, 1596
Alw26I GTCTC 7 cut(s) 220, 627, 860, 975, 1406, 1523, 1711
AlwI GGATC 1 cut(s) 1187
AoxI GGCC 7 cut(s) 373, 406, 1077, 1236, 1308, 1326, 1652
ApeKI GCWGC 6 cut(s) 325, 533, 1018, 1298, 1367, 1424
ApoI RAATTY 2 cut(s) 130, 242
ArsI GACNNNNNNTTYG 2 cut(s) 1628, 1660
Asp700I GAANNNNTTC 1 cut(s) 192
AspA2I CCTAGG 1 cut(s) 376
AspLEI GCGC 4 cut(s) 538, 921, 1303, 1449
AspS9I GGNCC 5 cut(s) 373, 725, 1309, 1612, 1652
AsuC2I CCSGG 1 cut(s) 493
AsuHPI GGTGA 4 cut(s) 124, 172, 215, 481
AsuII TTCGAA 3 cut(s) 23, 134, 417
AvaII GGWCC 2 cut(s) 725, 1612
AvrII CCTAGG 1 cut(s) 376
AxyI CCTNAGG 1 cut(s) 1722
BauI CACGAG 1 cut(s) 209
BbsI GAAGAC 3 cut(s) 12, 559, 1641
BbvCI CCTCAGC 1 cut(s) 1371
BbvI GCAGC 6 cut(s) 312, 545, 1005, 1310, 1354, 1411
BccI CCATC 3 cut(s) 234, 472, 1602
BceAI ACGGC 2 cut(s) 393, 1027
BcgI CGANNNNNNTGC 2 cut(s) 1439, 1473
BciT130I CCWGG 2 cut(s) 1065, 1073
BciVI GTATCC 1 cut(s) 1698
BclI TGATCA 1 cut(s) 1258
BcnI CCSGG 1 cut(s) 493
BcoDI GTCTC 7 cut(s) 220, 627, 860, 975, 1406, 1523, 1711
BfaI CTAG 4 cut(s) 15, 377, 698, 1604
BfoI RGCGCY 1 cut(s) 539
BfuAI ACCTGC 1 cut(s) 1294
BfuI GTATCC 1 cut(s) 1698
BglII AGATCT 1 cut(s) 1291
BisI GCNGC 9 cut(s) 326, 406, 509, 534, 672, 1019, 1299, 1368, 1425
BlnI CCTAGG 1 cut(s) 376
BlpI GCTNAGC 1 cut(s) 1404
BlsI GCNGC 9 cut(s) 327, 407, 510, 535, 673, 1020, 1300, 1369, 1426
Bme1390I CCNGG 3 cut(s) 493, 1065, 1073
Bme18I GGWCC 2 cut(s) 725, 1612
BmgBI CACGTC 1 cut(s) 633
BmgT120I GGNCC 5 cut(s) 373, 725, 1309, 1612, 1652
BmiI GGNNCC 5 cut(s) 759, 1069, 1140, 1388, 1613
BmrFI CCNGG 3 cut(s) 493, 1065, 1073
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 5 cut(s) 301, 392, 1344, 1648, 1735
BmuI ACTGGG 1 cut(s) 39
BpiI GAAGAC 3 cut(s) 12, 559, 1641
BpmI CTGGAG 1 cut(s) 670
Bpu10I CCTNAGC 2 cut(s) 1313, 1371
Bpu1102I GCTNAGC 1 cut(s) 1404
Bpu14I TTCGAA 3 cut(s) 23, 134, 417
BpuEI CTTGAG 3 cut(s) 842, 957, 1034
BpuMI CCSGG 1 cut(s) 493
BsaAI YACGTR 1 cut(s) 649
BsaI GGTCTC 2 cut(s) 220, 1711
BsaJI CCNNGG 6 cut(s) 376, 549, 769, 1071, 1239, 1615
Bsc4I CCNNNNNNNGG 1 cut(s) 1324
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 3 cut(s) 45, 289, 687
Bse21I CCTNAGG 1 cut(s) 1722
Bse3DI GCAATG 2 cut(s) 1142, 1197
BseBI CCWGG 2 cut(s) 1065, 1073
BseDI CCNNGG 6 cut(s) 376, 549, 769, 1071, 1239, 1615
BseGI GGATG 6 cut(s) 253, 292, 622, 1613, 1719, 1747
BseLI CCNNNNNNNGG 1 cut(s) 1324
BseMI GCAATG 2 cut(s) 1142, 1197
BseMII CTCAG 5 cut(s) 689, 1046, 1362, 1430, 1713
BseNI ACTGG 3 cut(s) 45, 289, 687
BseRI GAGGAG 2 cut(s) 435, 786
BseX3I CGGCCG 1 cut(s) 406
BseXI GCAGC 6 cut(s) 312, 545, 1005, 1310, 1354, 1411
BseYI CCCAGC 1 cut(s) 32
Bsh1236I CGCG 1 cut(s) 1449
Bsh1285I CGRYCG 1 cut(s) 409
BshFI GGCC 7 cut(s) 375, 408, 1079, 1238, 1310, 1328, 1654
BsiEI CGRYCG 1 cut(s) 409
BsiSI CCGG 3 cut(s) 183, 492, 884
BslI CCNNNNNNNGG 1 cut(s) 1324
BsmAI GTCTC 7 cut(s) 220, 627, 860, 975, 1406, 1523, 1711
BsmI GAATGC 3 cut(s) 673, 1516, 1661
BsnI GGCC 7 cut(s) 375, 408, 1079, 1238, 1310, 1328, 1654
Bso31I GGTCTC 2 cut(s) 220, 1711
Bsp119I TTCGAA 3 cut(s) 23, 134, 417
Bsp143I GATC 5 cut(s) 579, 719, 1192, 1258, 1291
Bsp1720I GCTNAGC 1 cut(s) 1404
Bsp19I CCATGG 1 cut(s) 549
BspACI CCGC 6 cut(s) 333, 405, 509, 671, 1357, 1427
BspANI GGCC 7 cut(s) 375, 408, 1079, 1238, 1310, 1328, 1654
BspCNI CTCAG 5 cut(s) 688, 1045, 1363, 1429, 1714
BspFNI CGCG 1 cut(s) 1449
BspHI TCATGA 1 cut(s) 1261
BspLI GGNNCC 5 cut(s) 759, 1069, 1140, 1388, 1613
BspMI ACCTGC 1 cut(s) 1294
BspPI GGATC 1 cut(s) 1187
BspQI GCTCTTC 1 cut(s) 873
BspT104I TTCGAA 3 cut(s) 23, 134, 417
BspTNI GGTCTC 2 cut(s) 220, 1711
BsrDI GCAATG 2 cut(s) 1142, 1197
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 3 cut(s) 45, 289, 687
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 6 cut(s) 376, 549, 769, 1071, 1239, 1615
BssMI GATC 5 cut(s) 579, 719, 1192, 1258, 1291
BssSI CACGAG 1 cut(s) 209
BssT1I CCWWGG 4 cut(s) 376, 549, 1239, 1615
Bst2BI CACGAG 1 cut(s) 209
Bst2UI CCWGG 2 cut(s) 1065, 1073
Bst6I CTCTTC 6 cut(s) 20, 223, 255, 873, 891, 1087
BstAPI GCANNNNNTGC 1 cut(s) 298
BstBAI YACGTR 1 cut(s) 649
BstBI TTCGAA 3 cut(s) 23, 134, 417
BstC8I GCNNGC 4 cut(s) 290, 1219, 1286, 1319
BstDEI CTNAG 9 cut(s) 230, 573, 675, 1032, 1313, 1371, 1404, 1416, 1722
BstDSI CCRYGG 1 cut(s) 549
BstF5I GGATG 6 cut(s) 253, 292, 622, 1613, 1719, 1747
BstFNI CGCG 1 cut(s) 1449
BstH2I RGCGCY 1 cut(s) 539
BstHHI GCGC 4 cut(s) 538, 921, 1303, 1449
BstKTI GATC 5 cut(s) 582, 722, 1195, 1261, 1294
BstMAI GTCTC 7 cut(s) 220, 627, 860, 975, 1406, 1523, 1711
BstMBI GATC 5 cut(s) 579, 719, 1192, 1258, 1291
BstMCI CGRYCG 1 cut(s) 409
BstMWI GCNNNNNNNGC 6 cut(s) 298, 1027, 1223, 1307, 1541, 1754
BstNI CCWGG 2 cut(s) 1065, 1073
BstNSI RCATGY 3 cut(s) 325, 1120, 1221
BstSCI CCNGG 3 cut(s) 491, 1063, 1071
BstUI CGCG 1 cut(s) 1449
BstV1I GCAGC 6 cut(s) 312, 545, 1005, 1310, 1354, 1411
BstV2I GAAGAC 3 cut(s) 12, 559, 1641
BstX2I RGATCY 2 cut(s) 1192, 1291
BstYI RGATCY 2 cut(s) 1192, 1291
BstZI CGGCCG 1 cut(s) 406
Bsu36I CCTNAGG 1 cut(s) 1722
BsuI GTATCC 1 cut(s) 1698
BsuRI GGCC 7 cut(s) 375, 408, 1079, 1238, 1310, 1328, 1654
BtgI CCRYGG 1 cut(s) 549
BtrI CACGTC 1 cut(s) 633
BtsCI GGATG 6 cut(s) 253, 292, 622, 1613, 1719, 1747
BtsI GCAGTG 1 cut(s) 1233
BtsIMutI CAGTG 2 cut(s) 694, 1233
BveI ACCTGC 1 cut(s) 1294
Cac8I GCNNGC 4 cut(s) 290, 1219, 1286, 1319
CciI TCATGA 1 cut(s) 1261
CfoI GCGC 4 cut(s) 538, 921, 1303, 1449
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 5 cut(s) 373, 725, 1309, 1612, 1652
CseI GACGC 1 cut(s) 644
CspCI CAANNNNNGTGG 4 cut(s) 254, 289, 826, 861
DdeI CTNAG 9 cut(s) 230, 573, 675, 1032, 1313, 1371, 1404, 1416, 1722
DpnI GATC 5 cut(s) 581, 721, 1194, 1260, 1293
DpnII GATC 5 cut(s) 579, 719, 1192, 1258, 1291
DraIII CACNNNGTG 1 cut(s) 495
EaeI YGGCCR 1 cut(s) 406
EagI CGGCCG 1 cut(s) 406
Eam1104I CTCTTC 6 cut(s) 20, 223, 255, 873, 891, 1087
EarI CTCTTC 6 cut(s) 20, 223, 255, 873, 891, 1087
EclXI CGGCCG 1 cut(s) 406
Eco130I CCWWGG 4 cut(s) 376, 549, 1239, 1615
Eco147I AGGCCT 1 cut(s) 1238
Eco31I GGTCTC 2 cut(s) 220, 1711
Eco47I GGWCC 2 cut(s) 725, 1612
Eco52I CGGCCG 1 cut(s) 406
Eco57I CTGAAG 2 cut(s) 1154, 1457
Eco81I CCTNAGG 1 cut(s) 1722
EcoO109I RGGNCCY 1 cut(s) 1652
EcoRI GAATTC 1 cut(s) 130
EcoRII CCWGG 2 cut(s) 1063, 1071
EcoT14I CCWWGG 4 cut(s) 376, 549, 1239, 1615
EcoT22I ATGCAT 1 cut(s) 1663
ErhI CCWWGG 4 cut(s) 376, 549, 1239, 1615
FalI AAGNNNNNCTT 2 cut(s) 996, 1028
FauI CCCGC 1 cut(s) 326
FbaI TGATCA 1 cut(s) 1258
Fnu4HI GCNGC 9 cut(s) 326, 406, 509, 534, 672, 1019, 1299, 1368, 1425
FokI GGATG 6 cut(s) 240, 279, 629, 1620, 1726, 1754
Fsp4HI GCNGC 9 cut(s) 326, 406, 509, 534, 672, 1019, 1299, 1368, 1425
FspBI CTAG 4 cut(s) 15, 377, 698, 1604
GlaI GCGC 4 cut(s) 537, 920, 1302, 1448
GluI GCNGC 9 cut(s) 326, 406, 509, 534, 672, 1019, 1299, 1368, 1425
GsaI CCCAGC 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 670
HaeII RGCGCY 1 cut(s) 539
HaeIII GGCC 7 cut(s) 375, 408, 1079, 1238, 1310, 1328, 1654
HapII CCGG 3 cut(s) 183, 492, 884
HgaI GACGC 1 cut(s) 644
HhaI GCGC 4 cut(s) 538, 921, 1303, 1449
Hin6I GCGC 4 cut(s) 536, 919, 1301, 1447
HinP1I GCGC 4 cut(s) 536, 919, 1301, 1447
HincII GTYRAC 1 cut(s) 1152
HindII GTYRAC 1 cut(s) 1152
HindIII AAGCTT 1 cut(s) 1594
HinfI GANTC 8 cut(s) 605, 620, 853, 869, 1036, 1172, 1339, 1414
HpaI GTTAAC 1 cut(s) 1152
HpaII CCGG 3 cut(s) 183, 492, 884
HphI GGTGA 4 cut(s) 124, 172, 215, 481
Hpy166II GTNNAC 3 cut(s) 53, 452, 1152
Hpy188I TCNGA 9 cut(s) 770, 819, 826, 1035, 1248, 1419, 1601, 1693, 1741
Hpy188III TCNNGA 8 cut(s) 82, 161, 197, 238, 723, 893, 1262, 1351
Hpy8I GTNNAC 3 cut(s) 53, 452, 1152
Hpy99I CGWCG 3 cut(s) 660, 800, 1048
HpyAV CCTTC 7 cut(s) 158, 998, 1129, 1414, 1432, 1643, 1743
HpyCH4IV ACGT 4 cut(s) 486, 555, 632, 648
HpyF10VI GCNNNNNNNGC 6 cut(s) 298, 1027, 1223, 1307, 1541, 1754
HpyF3I CTNAG 9 cut(s) 230, 573, 675, 1032, 1313, 1371, 1404, 1416, 1722
HpySE526I ACGT 4 cut(s) 486, 555, 632, 648
HspAI GCGC 4 cut(s) 536, 919, 1301, 1447
Ksp22I TGATCA 1 cut(s) 1258
KspAI GTTAAC 1 cut(s) 1152
Kzo9I GATC 5 cut(s) 579, 719, 1192, 1258, 1291
LguI GCTCTTC 1 cut(s) 873
LmnI GCTCC 4 cut(s) 689, 757, 1144, 1386
Lsp1109I GCAGC 6 cut(s) 312, 545, 1005, 1310, 1354, 1411
LweI GCATC 5 cut(s) 301, 392, 1344, 1648, 1735
MaeI CTAG 4 cut(s) 15, 377, 698, 1604
MaeII ACGT 4 cut(s) 486, 555, 632, 648
MaeIII GTNAC 5 cut(s) 280, 482, 487, 1119, 1573
MalI GATC 5 cut(s) 581, 721, 1194, 1260, 1293
MboI GATC 5 cut(s) 579, 719, 1192, 1258, 1291
MfeI CAATTG 1 cut(s) 749
MflI RGATCY 2 cut(s) 1192, 1291
MluCI AATT 9 cut(s) 121, 130, 156, 242, 302, 712, 749, 811, 1517
MlyI GAGTC 5 cut(s) 629, 862, 1166, 1333, 1408
MmeI TCCRAC 6 cut(s) 130, 735, 844, 1113, 1164, 1624
Mph1103I ATGCAT 1 cut(s) 1663
MroXI GAANNNNTTC 1 cut(s) 192
MseI TTAA 1 cut(s) 1151
MslI CAYNNNNRTG 1 cut(s) 350
MspI CCGG 3 cut(s) 183, 492, 884
MspR9I CCNGG 3 cut(s) 493, 1065, 1073
MunI CAATTG 1 cut(s) 749
Mva1269I GAATGC 3 cut(s) 673, 1516, 1661
MvaI CCWGG 2 cut(s) 1065, 1073
MvnI CGCG 1 cut(s) 1449
MwoI GCNNNNNNNGC 6 cut(s) 298, 1027, 1223, 1307, 1541, 1754
NciI CCSGG 1 cut(s) 493
NcoI CCATGG 1 cut(s) 549
NdeII GATC 5 cut(s) 579, 719, 1192, 1258, 1291
NlaIV GGNNCC 5 cut(s) 759, 1069, 1140, 1388, 1613
NmuCI GTSAC 2 cut(s) 487, 1119
NsiI ATGCAT 1 cut(s) 1663
NspI RCATGY 3 cut(s) 325, 1120, 1221
NspV TTCGAA 3 cut(s) 23, 134, 417
PaeI GCATGC 1 cut(s) 1221
PagI TCATGA 1 cut(s) 1261
PaqCI CACCTGC 1 cut(s) 1294
PceI AGGCCT 1 cut(s) 1238
PciI ACATGT 1 cut(s) 1116
PciSI GCTCTTC 1 cut(s) 873
PctI GAATGC 3 cut(s) 673, 1516, 1661
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 3 cut(s) 605, 869, 1036
PkrI GCNGC 9 cut(s) 327, 407, 510, 535, 673, 1020, 1300, 1369, 1426
PleI GAGTC 5 cut(s) 628, 861, 1166, 1333, 1408
PpsI GAGTC 5 cut(s) 628, 861, 1166, 1333, 1408
Ppu21I YACGTR 1 cut(s) 649
PscI ACATGT 1 cut(s) 1116
Psp6I CCWGG 2 cut(s) 1063, 1071
PspFI CCCAGC 1 cut(s) 32
PspGI CCWGG 2 cut(s) 1063, 1071
PspN4I GGNNCC 5 cut(s) 759, 1069, 1140, 1388, 1613
PspPI GGNCC 5 cut(s) 373, 725, 1309, 1612, 1652
PsuI RGATCY 2 cut(s) 1192, 1291
RseI CAYNNNNRTG 1 cut(s) 350
SapI GCTCTTC 1 cut(s) 873
SaqAI TTAA 1 cut(s) 1151
SatI GCNGC 9 cut(s) 326, 406, 509, 534, 672, 1019, 1299, 1368, 1425
Sau3AI GATC 5 cut(s) 579, 719, 1192, 1258, 1291
Sau96I GGNCC 5 cut(s) 373, 725, 1309, 1612, 1652
SchI GAGTC 5 cut(s) 629, 862, 1166, 1333, 1408
ScrFI CCNGG 3 cut(s) 493, 1065, 1073
SfaNI GCATC 5 cut(s) 301, 392, 1344, 1648, 1735
SfuI TTCGAA 3 cut(s) 23, 134, 417
SgrAI CRCCGGYG 1 cut(s) 182
SinI GGWCC 2 cut(s) 725, 1612
SmiMI CAYNNNNRTG 1 cut(s) 350
SmlI CTYRAG 3 cut(s) 857, 972, 1013
SmoI CTYRAG 3 cut(s) 857, 972, 1013
SphI GCATGC 1 cut(s) 1221
Sse9I AATT 9 cut(s) 121, 130, 156, 242, 302, 712, 749, 811, 1517
SseBI AGGCCT 1 cut(s) 1238
SsiI CCGC 6 cut(s) 333, 405, 509, 671, 1357, 1427
SspI AATATT 2 cut(s) 175, 193
SspMI CTAG 4 cut(s) 15, 377, 698, 1604
StuI AGGCCT 1 cut(s) 1238
StyD4I CCNGG 3 cut(s) 491, 1063, 1071
StyI CCWWGG 4 cut(s) 376, 549, 1239, 1615
TaiI ACGT 4 cut(s) 489, 558, 635, 651
TaqI TCGA 8 cut(s) 23, 134, 417, 582, 718, 798, 1206, 1665
TasI AATT 9 cut(s) 121, 130, 156, 242, 302, 712, 749, 811, 1517
TauI GCSGC 3 cut(s) 408, 511, 674
TfiI GAWTC 3 cut(s) 605, 869, 1036
Tru1I TTAA 1 cut(s) 1151
Tru9I TTAA 1 cut(s) 1151
TscAI CASTG 2 cut(s) 694, 1233
TseFI GTSAC 2 cut(s) 487, 1119
TseI GCWGC 6 cut(s) 325, 533, 1018, 1298, 1367, 1424
Tsp45I GTSAC 2 cut(s) 487, 1119
TspDTI ATGAA 5 cut(s) 242, 306, 368, 386, 1278
TspGWI ACGGA 2 cut(s) 136, 1376
TspRI CASTG 2 cut(s) 694, 1233
VpaK11BI GGWCC 2 cut(s) 725, 1612
XapI RAATTY 2 cut(s) 130, 242
XceI RCATGY 3 cut(s) 325, 1120, 1221
XmaJI CCTAGG 1 cut(s) 376
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 4 cut(s) 15, 377, 698, 1604
Zsp2I ATGCAT 1 cut(s) 1663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.