Rmu_sc0006031.1_g000027

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006031.1
OG0000480
Physical Location & Seq
Forward (+)
140708 .. 141598
891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006031.1_g000027.1.cds

Sequence Viewer

Length: 804 bp
atgtcatcgcattctccgctgcagagggttcatttcattcctccacccatgccaaatactaccgctcatccatcccctcgaagcgcccatatgtcctcggcaacccgattggtcatgatgcctcctcctccatccaaagttctagaattaagtttcaggaaacgtgacaactcccatgttctggtaggaaaatccatctccgccaatggtccggcagcgtcagcggtagctagtgcatttgcctcactgaggcccaattcagagctgtctcctaagagtcctacggaactgtacaatgacatgtgcgcttttcagctggatgccctcatggcgtcccaccacttcctacgcagcctcgacgccttccaattgaagcaacaacaacagttggacgaggcgagtcgccaactcaaatcccaggaagaggagcttaacgaacagatgaaaacaatggcggacctaagtctcctcctcgaggacaaagatcgtcagatagcgacattgaaagctgatttggacttagtaactcggagcaaggagaaggaattcgagagaggggctgctcagatgaggcgcgtatcagccaaaaattttcggctggggtggaatcaagccctgaccagagaggaggacaggtgctatgttggccctgacgaattcgaccattactacggattcgcccccatgtgctactctcccattcgaggcatgcttcttggagacgttccctcacctgcatccagcacttcggagggccatggccatggggatgaagaagtgtcctccacccctcgatccaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

29.71

Weight (kDa)

6.56

Isoelectric Point (pI)

60.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 742
AbsI CCTCGAGG 1 cut(s) 473
Acc36I ACCTGC 1 cut(s) 742
AccB7I CCANNNNNTGG 1 cut(s) 181
AccBSI CCGCTC 1 cut(s) 65
AccII CGCG 1 cut(s) 576
AciI CCGC 5 cut(s) 17, 63, 201, 224, 455
AclWI GGATC 1 cut(s) 789
AcoI YGGCCR 1 cut(s) 760
AcsI RAATTY 3 cut(s) 545, 589, 656
AcyI GRCGYC 2 cut(s) 332, 360
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 5 cut(s) 181, 249, 424, 475, 704
AflIII ACRYGT 1 cut(s) 300
AgsI TTSAA 2 cut(s) 373, 505
AjnI CCWGG 1 cut(s) 417
AjuI GAANNNNNNNTTGG 2 cut(s) 497, 529
AluBI AGCT 5 cut(s) 230, 265, 316, 430, 509
AluI AGCT 5 cut(s) 230, 265, 316, 430, 509
Alw26I GTCTC 3 cut(s) 273, 470, 714
AlwI GGATC 1 cut(s) 789
Ama87I CYCGRG 1 cut(s) 473
AoxI GGCC 4 cut(s) 251, 646, 754, 760
ApeKI GCWGC 4 cut(s) 19, 215, 351, 560
ApoI RAATTY 3 cut(s) 545, 589, 656
Asp700I GAANNNNTTC 1 cut(s) 545
AspLEI GCGC 3 cut(s) 86, 308, 576
AspS9I GGNCC 5 cut(s) 209, 252, 457, 647, 754
AsuHPI GGTGA 1 cut(s) 723
AvaI CYCGRG 1 cut(s) 473
AvaII GGWCC 2 cut(s) 209, 457
BalI TGGCCA 1 cut(s) 762
BbvI GCAGC 4 cut(s) 6, 227, 363, 547
BccI CCATC 3 cut(s) 79, 139, 203
BciT130I CCWGG 1 cut(s) 419
BcoDI GTCTC 3 cut(s) 273, 470, 714
BfaI CTAG 2 cut(s) 143, 231
BfmI CTRYAG 1 cut(s) 20
BfoI RGCGCY 1 cut(s) 87
BfuAI ACCTGC 1 cut(s) 742
BglI GCCNNNNNGGC 1 cut(s) 329
BisI GCNGC 4 cut(s) 20, 216, 352, 561
BlsI GCNGC 4 cut(s) 21, 217, 353, 562
Bme1390I CCNGG 1 cut(s) 419
Bme18I GGWCC 2 cut(s) 209, 457
BmeT110I CYCGRG 1 cut(s) 473
BmgT120I GGNCC 5 cut(s) 209, 252, 457, 647, 754
BmrFI CCNGG 1 cut(s) 419
BmsI GCATC 3 cut(s) 108, 310, 746
BoxI GACNNNNGTC 1 cut(s) 462
BsaHI GRCGYC 2 cut(s) 332, 360
BsaJI CCNNGG 4 cut(s) 96, 417, 757, 763
BsaXI ACNNNNNCTCC 2 cut(s) 620, 650
Bsc4I CCNNNNNNNGG 5 cut(s) 181, 249, 424, 475, 704
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 4 cut(s) 96, 417, 757, 763
BseGI GGATG 6 cut(s) 67, 71, 131, 325, 737, 775
BseLI CCNNNNNNNGG 5 cut(s) 181, 249, 424, 475, 704
BseMII CTCAG 2 cut(s) 239, 578
BseRI GAGGAG 6 cut(s) 114, 117, 440, 458, 461, 641
BseXI GCAGC 4 cut(s) 6, 227, 363, 547
BseYI CCCAGC 1 cut(s) 598
Bsh1236I CGCG 1 cut(s) 576
BshFI GGCC 4 cut(s) 253, 648, 756, 762
BsiHKCI CYCGRG 1 cut(s) 473
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 5 cut(s) 181, 249, 424, 475, 704
BsmAI GTCTC 3 cut(s) 273, 470, 714
BsmBI CGTCTC 1 cut(s) 714
BsmFI GGGAC 1 cut(s) 319
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 4 cut(s) 253, 648, 756, 762
BsoBI CYCGRG 1 cut(s) 473
Bsp1407I TGTACA 1 cut(s) 291
Bsp143I GATC 2 cut(s) 484, 794
Bsp19I CCATGG 2 cut(s) 757, 763
BspACI CCGC 5 cut(s) 17, 63, 201, 224, 455
BspANI GGCC 4 cut(s) 253, 648, 756, 762
BspCNI CTCAG 2 cut(s) 240, 577
BspFNI CGCG 1 cut(s) 576
BspHI TCATGA 1 cut(s) 114
BspMAI CTGCAG 1 cut(s) 24
BspMI ACCTGC 1 cut(s) 742
BspPI GGATC 1 cut(s) 789
BsrBI CCGCTC 1 cut(s) 65
BsrGI TGTACA 1 cut(s) 291
BssECI CCNNGG 4 cut(s) 96, 417, 757, 763
BssMI GATC 2 cut(s) 484, 794
BssNI GRCGYC 2 cut(s) 332, 360
BssT1I CCWWGG 2 cut(s) 757, 763
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 2 cut(s) 291, 387
Bst6I CTCTTC 1 cut(s) 417
BstACI GRCGYC 2 cut(s) 332, 360
BstAUI TGTACA 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 710
BstDEI CTNAG 5 cut(s) 248, 273, 461, 520, 564
BstDSI CCRYGG 2 cut(s) 757, 763
BstENI CCTNNNNNAGG 2 cut(s) 247, 473
BstF5I GGATG 6 cut(s) 67, 71, 131, 325, 737, 775
BstFNI CGCG 1 cut(s) 576
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 3 cut(s) 86, 308, 576
BstKTI GATC 2 cut(s) 487, 797
BstMAI GTCTC 3 cut(s) 273, 470, 714
BstMBI GATC 2 cut(s) 484, 794
BstMWI GCNNNNNNNGC 4 cut(s) 16, 221, 329, 645
BstNI CCWGG 1 cut(s) 419
BstNSI RCATGY 2 cut(s) 304, 712
BstPAI GACNNNNGTC 1 cut(s) 462
BstSCI CCNGG 1 cut(s) 417
BstSFI CTRYAG 1 cut(s) 20
BstUI CGCG 1 cut(s) 576
BstV1I GCAGC 4 cut(s) 6, 227, 363, 547
BstXI CCANNNNNNTGG 1 cut(s) 764
BsuRI GGCC 4 cut(s) 253, 648, 756, 762
BtgI CCRYGG 2 cut(s) 757, 763
BtsCI GGATG 6 cut(s) 67, 71, 131, 325, 737, 775
BtsIMutI CAGTG 1 cut(s) 245
BveI ACCTGC 1 cut(s) 742
Cac8I GCNNGC 1 cut(s) 710
CciI TCATGA 1 cut(s) 114
CfoI GCGC 3 cut(s) 86, 308, 576
Cfr13I GGNCC 5 cut(s) 209, 252, 457, 647, 754
CseI GACGC 3 cut(s) 207, 321, 368
Csp6I GTAC 1 cut(s) 292
CviAII CATG 9 cut(s) 49, 115, 176, 301, 328, 685, 709, 758, 764
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 5 cut(s) 248, 273, 461, 520, 564
DpnI GATC 2 cut(s) 486, 796
DpnII GATC 2 cut(s) 484, 794
EaeI YGGCCR 1 cut(s) 760
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
EciI GGCGGA 2 cut(s) 190, 470
Eco130I CCWWGG 2 cut(s) 757, 763
Eco47I GGWCC 2 cut(s) 209, 457
Eco88I CYCGRG 1 cut(s) 473
EcoNI CCTNNNNNAGG 2 cut(s) 247, 473
EcoRI GAATTC 2 cut(s) 545, 656
EcoRII CCWGG 1 cut(s) 417
EcoT14I CCWWGG 2 cut(s) 757, 763
ErhI CCWWGG 2 cut(s) 757, 763
Esp3I CGTCTC 1 cut(s) 714
FaeI CATG 9 cut(s) 52, 118, 179, 304, 331, 688, 712, 761, 767
FalI AAGNNNNNCTT 2 cut(s) 414, 446
FaqI GGGAC 1 cut(s) 319
FatI CATG 9 cut(s) 48, 114, 175, 300, 327, 684, 708, 757, 763
FauNDI CATATG 1 cut(s) 90
Fnu4HI GCNGC 4 cut(s) 20, 216, 352, 561
FokI GGATG 6 cut(s) 54, 58, 118, 332, 724, 782
Fsp4HI GCNGC 4 cut(s) 20, 216, 352, 561
FspBI CTAG 2 cut(s) 143, 231
GlaI GCGC 3 cut(s) 85, 307, 575
GluI GCNGC 4 cut(s) 20, 216, 352, 561
GsaI CCCAGC 1 cut(s) 602
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 4 cut(s) 253, 648, 756, 762
HapII CCGG 1 cut(s) 212
HgaI GACGC 3 cut(s) 207, 321, 368
HhaI GCGC 3 cut(s) 86, 308, 576
Hin1I GRCGYC 2 cut(s) 332, 360
Hin1II CATG 9 cut(s) 52, 118, 179, 304, 331, 688, 712, 761, 767
Hin6I GCGC 3 cut(s) 84, 306, 574
HinP1I GCGC 3 cut(s) 84, 306, 574
HinfI GANTC 4 cut(s) 277, 400, 607, 675
HpaII CCGG 1 cut(s) 212
HphI GGTGA 1 cut(s) 723
Hpy188I TCNGA 5 cut(s) 262, 492, 531, 567, 751
Hpy188III TCNNGA 4 cut(s) 115, 143, 157, 550
Hpy99I CGWCG 1 cut(s) 362
HpyAV CCTTC 2 cut(s) 373, 535
HpyCH4III ACNGT 2 cut(s) 291, 387
HpyCH4IV ACGT 2 cut(s) 163, 723
HpyCH4V TGCA 3 cut(s) 22, 236, 737
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 221, 329, 645
HpyF3I CTNAG 5 cut(s) 248, 273, 461, 520, 564
HpySE526I ACGT 2 cut(s) 163, 723
Hsp92I GRCGYC 2 cut(s) 332, 360
Hsp92II CATG 9 cut(s) 52, 118, 179, 304, 331, 688, 712, 761, 767
HspAI GCGC 3 cut(s) 84, 306, 574
Kzo9I GATC 2 cut(s) 484, 794
LmnI GCTCC 2 cut(s) 427, 531
Lsp1109I GCAGC 4 cut(s) 6, 227, 363, 547
LweI GCATC 3 cut(s) 108, 310, 746
MaeI CTAG 2 cut(s) 143, 231
MaeII ACGT 2 cut(s) 163, 723
MaeIII GTNAC 2 cut(s) 164, 523
MalI GATC 2 cut(s) 486, 796
MbiI CCGCTC 1 cut(s) 65
MboI GATC 2 cut(s) 484, 794
MboII GAAGA 2 cut(s) 434, 785
MfeI CAATTG 1 cut(s) 368
MlsI TGGCCA 1 cut(s) 762
MluCI AATT 6 cut(s) 146, 256, 368, 545, 589, 656
MluNI TGGCCA 1 cut(s) 762
MlyI GAGTC 2 cut(s) 286, 409
MmeI TCCRAC 1 cut(s) 369
Mox20I TGGCCA 1 cut(s) 762
MroXI GAANNNNTTC 1 cut(s) 545
MscI TGGCCA 1 cut(s) 762
MseI TTAA 2 cut(s) 149, 432
MslI CAYNNNNRTG 2 cut(s) 762, 768
Msp20I TGGCCA 1 cut(s) 762
MspA1I CMGCKG 3 cut(s) 19, 224, 316
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 419
MunI CAATTG 1 cut(s) 368
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 419
MvnI CGCG 1 cut(s) 576
MwoI GCNNNNNNNGC 4 cut(s) 16, 221, 329, 645
NcoI CCATGG 2 cut(s) 757, 763
NdeI CATATG 1 cut(s) 90
NdeII GATC 2 cut(s) 484, 794
NlaIII CATG 9 cut(s) 52, 118, 179, 304, 331, 688, 712, 761, 767
NmeAIII GCCGAG 1 cut(s) 77
NmuCI GTSAC 1 cut(s) 164
NspI RCATGY 2 cut(s) 304, 712
PaeI GCATGC 1 cut(s) 712
PaeR7I CTCGAG 1 cut(s) 473
PagI TCATGA 1 cut(s) 114
PaqCI CACCTGC 1 cut(s) 742
PciI ACATGT 1 cut(s) 300
PctI GAATGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 545
PfeI GAWTC 2 cut(s) 607, 675
PflMI CCANNNNNTGG 1 cut(s) 181
PkrI GCNGC 4 cut(s) 21, 217, 353, 562
PleI GAGTC 2 cut(s) 285, 408
PpsI GAGTC 2 cut(s) 285, 408
PscI ACATGT 1 cut(s) 300
PshAI GACNNNNGTC 1 cut(s) 462
Psp6I CCWGG 1 cut(s) 417
PspFI CCCAGC 1 cut(s) 598
PspGI CCWGG 1 cut(s) 417
PspPI GGNCC 5 cut(s) 209, 252, 457, 647, 754
PspXI VCTCGAGB 1 cut(s) 473
PstI CTGCAG 1 cut(s) 24
PvuII CAGCTG 1 cut(s) 316
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 2 cut(s) 762, 768
SaqAI TTAA 2 cut(s) 149, 432
SatI GCNGC 4 cut(s) 20, 216, 352, 561
Sau3AI GATC 2 cut(s) 484, 794
Sau96I GGNCC 5 cut(s) 209, 252, 457, 647, 754
SchI GAGTC 2 cut(s) 286, 409
ScrFI CCNGG 1 cut(s) 419
SfaNI GCATC 3 cut(s) 108, 310, 746
SfcI CTRYAG 1 cut(s) 20
Sfr274I CTCGAG 1 cut(s) 473
SinI GGWCC 2 cut(s) 209, 457
SlaI CTCGAG 1 cut(s) 473
SmiMI CAYNNNNRTG 2 cut(s) 762, 768
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
SphI GCATGC 1 cut(s) 712
Sse9I AATT 6 cut(s) 146, 256, 368, 545, 589, 656
SsiI CCGC 5 cut(s) 17, 63, 201, 224, 455
SspMI CTAG 2 cut(s) 143, 231
StyD4I CCNGG 1 cut(s) 417
StyI CCWWGG 2 cut(s) 757, 763
TaaI ACNGT 2 cut(s) 291, 387
TaiI ACGT 2 cut(s) 166, 726
TaqI TCGA 7 cut(s) 79, 357, 474, 549, 660, 703, 793
TasI AATT 6 cut(s) 146, 256, 368, 545, 589, 656
TatI WGTACW 1 cut(s) 291
TfiI GAWTC 2 cut(s) 607, 675
Tru1I TTAA 2 cut(s) 149, 432
Tru9I TTAA 2 cut(s) 149, 432
TscAI CASTG 1 cut(s) 252
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 4 cut(s) 19, 215, 351, 560
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 4 cut(s) 20, 25, 458, 786
TspGWI ACGGA 2 cut(s) 299, 687
TspRI CASTG 1 cut(s) 252
Van91I CCANNNNNTGG 1 cut(s) 181
VpaK11BI GGWCC 2 cut(s) 209, 457
XagI CCTNNNNNAGG 2 cut(s) 247, 473
XapI RAATTY 3 cut(s) 545, 589, 656
XbaI TCTAGA 1 cut(s) 142
XceI RCATGY 2 cut(s) 304, 712
XhoI CTCGAG 1 cut(s) 473
XmnI GAANNNNTTC 1 cut(s) 545
XspI CTAG 2 cut(s) 143, 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.