Rmu_sc0007355.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007355.1
OG0000480
Physical Location & Seq
Forward (+)
13761 .. 14499
739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007355.1_g000007.1.cds

Sequence Viewer

Length: 636 bp
atggctccacaaaggaaacaaatccgtatcgttttcaactctcccgtaagacgtggcaaccagatccttggcactgatgaacgcactcctgaccatcaaaatcttattctgatttcatctgacagctcctctgacagggggttctcatctgatctcgacactcgccagttccttgaagatgtgttgaattaccccgacgatggccaggcgagtgttcctggtgccccgaaggctcatgccggtcctagtcgccctcatcgtcggagcatgagtactgacactaacaagggaacaagtcctgaatctcatcgcctccgtactctgagagaggaatcctttgtgctacaggatttgctcgagcatgccttgttggaggccagtaatctgaaggcggaggtccacaacttgttaatggagcttcaacgctcgagggaccatgcggagtgcctgaaagtagagctccgcgaatgttacctacgagaaaggtttctggatgaggtccgcattcaaagtcgtgaagatggatatcgcgatgccgtcatcgaataccgacaacgcatgatattgaacttccccgggatagacgagtcccttttgccatactacgtgggccctgacggcacctcccgacattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

24.22

Weight (kDa)

5.92

Isoelectric Point (pI)

63.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 221, 620
AccII CGCG 2 cut(s) 465, 531
AciI CCGC 4 cut(s) 392, 440, 463, 502
AclWI GGATC 1 cut(s) 58
AcoI YGGCCR 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 407
AfaI GTAC 2 cut(s) 274, 319
AfiI CCNNNNNNNGG 2 cut(s) 135, 200
AgsI TTSAA 6 cut(s) 37, 176, 187, 422, 509, 568
AjiI CACGTC 1 cut(s) 53
AjnI CCWGG 2 cut(s) 204, 217
AluBI AGCT 3 cut(s) 126, 418, 460
AluI AGCT 3 cut(s) 126, 418, 460
Alw21I GWGCWC 1 cut(s) 462
AlwI GGATC 1 cut(s) 58
Ama87I CYCGRG 3 cut(s) 356, 427, 575
AoxI GGCC 3 cut(s) 202, 375, 610
ApaI GGGCCC 1 cut(s) 614
Asp700I GAANNNNTTC 1 cut(s) 486
AspS9I GGNCC 6 cut(s) 242, 397, 433, 499, 610, 611
AsuC2I CCSGG 2 cut(s) 576, 577
AvaI CYCGRG 3 cut(s) 356, 427, 575
AvaII GGWCC 4 cut(s) 242, 397, 433, 499
BaeGI GKGCMC 2 cut(s) 226, 614
BalI TGGCCA 1 cut(s) 204
BanI GGYRCC 2 cut(s) 221, 620
BanII GRGCYC 2 cut(s) 462, 614
Bbv12I GWGCWC 1 cut(s) 462
BccI CCATC 3 cut(s) 102, 194, 515
BceAI ACGGC 2 cut(s) 521, 634
BciT130I CCWGG 2 cut(s) 206, 219
BcnI CCSGG 2 cut(s) 576, 577
BfaI CTAG 1 cut(s) 246
BfmI CTRYAG 1 cut(s) 344
BglI GCCNNNNNGGC 2 cut(s) 230, 618
BmcAI AGTACT 1 cut(s) 274
Bme1390I CCNGG 4 cut(s) 206, 219, 576, 577
Bme18I GGWCC 4 cut(s) 242, 397, 433, 499
BmeT110I CYCGRG 3 cut(s) 356, 427, 575
BmgBI CACGTC 1 cut(s) 53
BmgT120I GGNCC 6 cut(s) 242, 397, 433, 499, 610, 611
BmiI GGNNCC 5 cut(s) 6, 223, 434, 612, 622
BmrFI CCNGG 4 cut(s) 206, 219, 576, 577
BmsI GCATC 1 cut(s) 523
BpuMI CCSGG 2 cut(s) 576, 577
BsaAI YACGTR 1 cut(s) 607
BsaBI GATNNNNATC 1 cut(s) 525
BsaJI CCNNGG 3 cut(s) 67, 574, 575
BsaXI ACNNNNNCTCC 3 cut(s) 256, 286, 608
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 200
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 2 cut(s) 166, 378
Bse8I GATNNNNATC 1 cut(s) 525
BseBI CCWGG 2 cut(s) 206, 219
BseDI CCNNGG 3 cut(s) 67, 574, 575
BseGI GGATG 1 cut(s) 499
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 2 cut(s) 135, 200
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 2 cut(s) 166, 378
BseRI GAGGAG 1 cut(s) 118
BseSI GKGCMC 2 cut(s) 226, 614
Bsh1236I CGCG 2 cut(s) 465, 531
BshFI GGCC 3 cut(s) 204, 377, 612
BshNI GGYRCC 2 cut(s) 221, 620
BsiHKAI GWGCWC 1 cut(s) 462
BsiHKCI CYCGRG 3 cut(s) 356, 427, 575
BsiSI CCGG 2 cut(s) 240, 576
BslFI GGGAC 2 cut(s) 446, 574
BslI CCNNNNNNNGG 2 cut(s) 135, 200
BsmFI GGGAC 2 cut(s) 446, 574
BsmI GAATGC 1 cut(s) 504
BsnI GGCC 3 cut(s) 204, 377, 612
BsoBI CYCGRG 3 cut(s) 356, 427, 575
Bsp120I GGGCCC 1 cut(s) 610
Bsp1286I GDGCHC 3 cut(s) 226, 462, 614
Bsp143I GATC 2 cut(s) 63, 151
Bsp68I TCGCGA 1 cut(s) 531
BspACI CCGC 4 cut(s) 392, 440, 463, 502
BspANI GGCC 3 cut(s) 204, 377, 612
BspCNI CTCAG 1 cut(s) 315
BspFNI CGCG 2 cut(s) 465, 531
BspLI GGNNCC 5 cut(s) 6, 223, 434, 612, 622
BspPI GGATC 1 cut(s) 58
BspT107I GGYRCC 2 cut(s) 221, 620
BsrFI RCCGGY 1 cut(s) 239
BsrI ACTGG 2 cut(s) 166, 378
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 3 cut(s) 67, 574, 575
BssMI GATC 2 cut(s) 63, 151
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 2 cut(s) 206, 219
BstBAI YACGTR 1 cut(s) 607
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 1 cut(s) 323
BstENI CCTNNNNNAGG 1 cut(s) 133
BstF5I GGATG 1 cut(s) 499
BstFNI CGCG 2 cut(s) 465, 531
BstKTI GATC 2 cut(s) 66, 154
BstMBI GATC 2 cut(s) 63, 151
BstMWI GCNNNNNNNGC 2 cut(s) 230, 618
BstNI CCWGG 2 cut(s) 206, 219
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 4 cut(s) 204, 217, 574, 575
BstSFI CTRYAG 1 cut(s) 344
BstSLI GKGCMC 2 cut(s) 226, 614
BstUI CGCG 2 cut(s) 465, 531
BstX2I RGATCY 1 cut(s) 63
BstXI CCANNNNNNTGG 1 cut(s) 68
BstYI RGATCY 1 cut(s) 63
BsuRI GGCC 3 cut(s) 204, 377, 612
BtgZI GCGATG 2 cut(s) 293, 546
BtrI CACGTC 1 cut(s) 53
BtsCI GGATG 1 cut(s) 499
BtsIMutI CAGTG 1 cut(s) 72
BtuMI TCGCGA 1 cut(s) 531
Cac8I GCNNGC 1 cut(s) 363
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 6 cut(s) 242, 397, 433, 499, 610, 611
Cfr9I CCCGGG 1 cut(s) 575
Csp6I GTAC 2 cut(s) 273, 318
CviAII CATG 5 cut(s) 236, 268, 362, 437, 559
CviJI RGCY 8 cut(s) 5, 126, 204, 233, 377, 418, 460, 612
CviKI_1 RGCY 8 cut(s) 5, 126, 204, 233, 377, 418, 460, 612
CviQI GTAC 2 cut(s) 273, 318
DdeI CTNAG 1 cut(s) 323
DpnI GATC 2 cut(s) 65, 153
DpnII GATC 2 cut(s) 63, 151
EaeI YGGCCR 1 cut(s) 202
EciI GGCGGA 1 cut(s) 407
Ecl136II GAGCTC 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 67
Eco24I GRGCYC 2 cut(s) 462, 614
Eco32I GATATC 1 cut(s) 527
Eco47I GGWCC 4 cut(s) 242, 397, 433, 499
Eco53kI GAGCTC 1 cut(s) 460
Eco57I CTGAAG 1 cut(s) 407
Eco88I CYCGRG 3 cut(s) 356, 427, 575
EcoICRI GAGCTC 1 cut(s) 460
EcoNI CCTNNNNNAGG 1 cut(s) 133
EcoO109I RGGNCCY 1 cut(s) 611
EcoRII CCWGG 2 cut(s) 204, 217
EcoRV GATATC 1 cut(s) 527
EcoT14I CCWWGG 1 cut(s) 67
EcoT38I GRGCYC 2 cut(s) 462, 614
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 5 cut(s) 239, 271, 365, 440, 562
FaiI YATR 6 cut(s) 237, 269, 363, 438, 560, 601
FaqI GGGAC 2 cut(s) 446, 574
FatI CATG 5 cut(s) 235, 267, 361, 436, 558
FokI GGATG 1 cut(s) 506
FriOI GRGCYC 2 cut(s) 462, 614
FspBI CTAG 1 cut(s) 246
HaeIII GGCC 3 cut(s) 204, 377, 612
HapII CCGG 2 cut(s) 240, 576
Hin1II CATG 5 cut(s) 239, 271, 365, 440, 562
HinfI GANTC 3 cut(s) 302, 332, 587
HpaII CCGG 2 cut(s) 240, 576
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 7 cut(s) 111, 121, 133, 151, 264, 324, 387
Hpy188III TCNNGA 7 cut(s) 89, 155, 299, 491, 515, 530, 627
Hpy8I GTNNAC 1 cut(s) 400
Hpy99I CGWCG 2 cut(s) 200, 264
HpyAV CCTTC 2 cut(s) 223, 382
HpyCH4IV ACGT 2 cut(s) 52, 606
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 618
HpyF3I CTNAG 1 cut(s) 323
HpySE526I ACGT 2 cut(s) 52, 606
Hsp92II CATG 5 cut(s) 239, 271, 365, 440, 562
Kzo9I GATC 2 cut(s) 63, 151
LmnI GCTCC 5 cut(s) 10, 131, 264, 415, 465
LweI GCATC 1 cut(s) 523
MaeI CTAG 1 cut(s) 246
MaeII ACGT 2 cut(s) 52, 606
MaeIII GTNAC 1 cut(s) 470
MalI GATC 2 cut(s) 65, 153
MboI GATC 2 cut(s) 63, 151
MboII GAAGA 2 cut(s) 188, 530
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 3 cut(s) 226, 462, 614
MlsI TGGCCA 1 cut(s) 204
MluCI AATT 1 cut(s) 187
MluNI TGGCCA 1 cut(s) 204
MlyI GAGTC 1 cut(s) 596
MmeI TCCRAC 2 cut(s) 242, 351
MnlI CCTC 9 cut(s) 139, 264, 322, 323, 367, 388, 423, 490, 634
Mox20I TGGCCA 1 cut(s) 204
MroXI GAANNNNTTC 1 cut(s) 486
MscI TGGCCA 1 cut(s) 204
MseI TTAA 1 cut(s) 410
Msp20I TGGCCA 1 cut(s) 204
MspI CCGG 2 cut(s) 240, 576
MspR9I CCNGG 4 cut(s) 206, 219, 576, 577
Mva1269I GAATGC 1 cut(s) 504
MvaI CCWGG 2 cut(s) 206, 219
MvnI CGCG 2 cut(s) 465, 531
MwoI GCNNNNNNNGC 2 cut(s) 230, 618
NciI CCSGG 2 cut(s) 576, 577
NdeII GATC 2 cut(s) 63, 151
NlaIII CATG 5 cut(s) 239, 271, 365, 440, 562
NlaIV GGNNCC 5 cut(s) 6, 223, 434, 612, 622
NruI TCGCGA 1 cut(s) 531
NspI RCATGY 1 cut(s) 365
PaeI GCATGC 1 cut(s) 365
PaeR7I CTCGAG 2 cut(s) 356, 427
PcsI WCGNNNNNNNCGW 1 cut(s) 256
PctI GAATGC 1 cut(s) 504
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 2 cut(s) 302, 332
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
Ppu21I YACGTR 1 cut(s) 607
Psp124BI GAGCTC 1 cut(s) 462
Psp6I CCWGG 2 cut(s) 204, 217
PspGI CCWGG 2 cut(s) 204, 217
PspN4I GGNNCC 5 cut(s) 6, 223, 434, 612, 622
PspOMI GGGCCC 1 cut(s) 610
PspPI GGNCC 6 cut(s) 242, 397, 433, 499, 610, 611
PspXI VCTCGAGB 2 cut(s) 356, 427
PsuI RGATCY 1 cut(s) 63
RruI TCGCGA 1 cut(s) 531
RsaI GTAC 2 cut(s) 274, 319
RsaNI GTAC 2 cut(s) 273, 318
SacI GAGCTC 1 cut(s) 462
SaqAI TTAA 1 cut(s) 410
Sau3AI GATC 2 cut(s) 63, 151
Sau96I GGNCC 6 cut(s) 242, 397, 433, 499, 610, 611
ScaI AGTACT 1 cut(s) 274
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 4 cut(s) 206, 219, 576, 577
SduI GDGCHC 3 cut(s) 226, 462, 614
SfaNI GCATC 1 cut(s) 523
SfcI CTRYAG 1 cut(s) 344
Sfr274I CTCGAG 2 cut(s) 356, 427
SinI GGWCC 4 cut(s) 242, 397, 433, 499
SlaI CTCGAG 2 cut(s) 356, 427
SmaI CCCGGG 1 cut(s) 577
SmlI CTYRAG 2 cut(s) 356, 427
SmoI CTYRAG 2 cut(s) 356, 427
SphI GCATGC 1 cut(s) 365
Sse9I AATT 1 cut(s) 187
SsiI CCGC 4 cut(s) 392, 440, 463, 502
SspMI CTAG 1 cut(s) 246
SstI GAGCTC 1 cut(s) 462
StyD4I CCNGG 4 cut(s) 204, 217, 574, 575
StyI CCWWGG 1 cut(s) 67
TaiI ACGT 2 cut(s) 55, 609
TaqI TCGA 4 cut(s) 156, 357, 428, 543
TasI AATT 1 cut(s) 187
TatI WGTACW 1 cut(s) 272
TfiI GAWTC 2 cut(s) 302, 332
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TscAI CASTG 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 93, 105
TspGWI ACGGA 2 cut(s) 14, 305
TspMI CCCGGG 1 cut(s) 575
TspRI CASTG 1 cut(s) 79
VpaK11BI GGWCC 4 cut(s) 242, 397, 433, 499
XagI CCTNNNNNAGG 1 cut(s) 133
XceI RCATGY 1 cut(s) 365
XhoI CTCGAG 2 cut(s) 356, 427
XmaI CCCGGG 1 cut(s) 575
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 1 cut(s) 246
ZrmI AGTACT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.