Rmu_sc0000335.1_g000030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000335.1
OG0000480
Physical Location & Seq
Reverse (-)
116086 .. 116535
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000335.1_g000030.1.cds

Sequence Viewer

Length: 450 bp
atggaagaggacttgggagccgagctcaccttttgggtgcctaaagagtttcagcttaaaatgacaagacataatattgttgactcggattgggtgtcgattttcgcaattcccgatgtcgccaatattttttccagcaaaggtatcccgagtaacgctctcgtactttccccacatcacctccgattccttaggtttcctctccaccttttatttcaaatcatgtggcggatattgggtttgcacccgatgcagttctacccaaactcgtatatgtttcttgttgggttgttagtcatggggaaaaagtgggaggtgtcacttgggatcaatgacttctttttctgtcaccttttggcacagattgccgagaccgactggtttttcaacttctcgccacgcccgctcagaaaagccttcgaagagaggacgtgtaacttctctagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

17.53

Weight (kDa)

6.58

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 37
AccBSI CCGCTC 1 cut(s) 406
AciI CCGC 2 cut(s) 229, 404
AclWI GGATC 1 cut(s) 335
AfaI GTAC 1 cut(s) 165
AflIII ACRYGT 1 cut(s) 431
AgsI TTSAA 2 cut(s) 218, 388
AjiI CACGTC 1 cut(s) 432
AluBI AGCT 2 cut(s) 25, 55
AluI AGCT 2 cut(s) 25, 55
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 1 cut(s) 335
Ama87I CYCGRG 1 cut(s) 148
AsuHPI GGTGA 3 cut(s) 19, 170, 341
AsuII TTCGAA 1 cut(s) 420
AvaI CYCGRG 1 cut(s) 148
AxyI CCTNAGG 1 cut(s) 191
BanI GGYRCC 1 cut(s) 37
BanII GRGCYC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 27
BciVI GTATCC 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 1 cut(s) 444
BfuI GTATCC 1 cut(s) 155
BmeT110I CYCGRG 1 cut(s) 148
BmgBI CACGTC 1 cut(s) 432
BmiI GGNNCC 2 cut(s) 19, 39
BmsI GCATC 1 cut(s) 240
BplI GAGNNNNNCTC 4 cut(s) 9, 41, 142, 174
Bpu14I TTCGAA 1 cut(s) 420
BsaI GGTCTC 1 cut(s) 365
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bse1I ACTGG 1 cut(s) 383
Bse21I CCTNAGG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 421
BseNI ACTGG 1 cut(s) 383
BshNI GGYRCC 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 365
Bso31I GGTCTC 1 cut(s) 365
BsoBI CYCGRG 1 cut(s) 148
Bsp119I TTCGAA 1 cut(s) 420
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 327
BspACI CCGC 2 cut(s) 229, 404
BspCNI CTCAG 1 cut(s) 420
BspLI GGNNCC 2 cut(s) 19, 39
BspPI GGATC 1 cut(s) 335
BspT104I TTCGAA 1 cut(s) 420
BspT107I GGYRCC 1 cut(s) 37
BspTNI GGTCTC 1 cut(s) 365
BsrBI CCGCTC 1 cut(s) 406
BsrI ACTGG 1 cut(s) 383
BssMI GATC 1 cut(s) 327
Bst6I CTCTTC 1 cut(s) 417
BstAPI GCANNNNNTGC 2 cut(s) 250, 365
BstBI TTCGAA 1 cut(s) 420
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 2 cut(s) 191, 407
BstKTI GATC 1 cut(s) 330
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 1 cut(s) 327
BstMWI GCNNNNNNNGC 3 cut(s) 250, 365, 403
Bsu36I CCTNAGG 1 cut(s) 191
BsuI GTATCC 1 cut(s) 155
BtrI CACGTC 1 cut(s) 432
Cac8I GCNNGC 1 cut(s) 404
Csp6I GTAC 1 cut(s) 164
CspCI CAANNNNNGTGG 2 cut(s) 206, 241
CviAII CATG 2 cut(s) 223, 298
CviJI RGCY 4 cut(s) 20, 25, 55, 416
CviKI_1 RGCY 4 cut(s) 20, 25, 55, 416
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 2 cut(s) 191, 407
DpnI GATC 1 cut(s) 329
DpnII GATC 1 cut(s) 327
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
EciI GGCGGA 1 cut(s) 244
Ecl136II GAGCTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 27
Eco31I GGTCTC 1 cut(s) 365
Eco53kI GAGCTC 1 cut(s) 25
Eco81I CCTNAGG 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 2 cut(s) 226, 301
FaiI YATR 5 cut(s) 72, 224, 273, 275, 299
FatI CATG 2 cut(s) 222, 297
FauI CCCGC 1 cut(s) 411
FriOI GRGCYC 1 cut(s) 27
FspBI CTAG 1 cut(s) 444
Hin1II CATG 2 cut(s) 226, 301
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 2 cut(s) 83, 186
HphI GGTGA 3 cut(s) 19, 170, 341
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 88, 185, 410
Hpy188III TCNNGA 2 cut(s) 113, 148
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 427
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 2 cut(s) 244, 253
HpyF10VI GCNNNNNNNGC 3 cut(s) 250, 365, 403
HpyF3I CTNAG 2 cut(s) 191, 407
HpySE526I ACGT 1 cut(s) 431
Hsp92II CATG 2 cut(s) 226, 301
Kzo9I GATC 1 cut(s) 327
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 2 cut(s) 148, 364
LweI GCATC 1 cut(s) 240
MaeI CTAG 1 cut(s) 444
MaeII ACGT 1 cut(s) 431
MaeIII GTNAC 4 cut(s) 152, 318, 347, 434
MalI GATC 1 cut(s) 329
MbiI CCGCTC 1 cut(s) 406
MboI GATC 1 cut(s) 327
MboII GAAGA 2 cut(s) 17, 434
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 1 cut(s) 108
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 4 cut(s) 191, 210, 307, 420
MseI TTAA 1 cut(s) 57
MwoI GCNNNNNNNGC 3 cut(s) 250, 365, 403
NdeII GATC 1 cut(s) 327
NlaIII CATG 2 cut(s) 226, 301
NlaIV GGNNCC 2 cut(s) 19, 39
NmeAIII GCCGAG 2 cut(s) 46, 394
NmuCI GTSAC 2 cut(s) 318, 347
NspV TTCGAA 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PfeI GAWTC 1 cut(s) 186
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 19, 39
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SacI GAGCTC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 57
Sau3AI GATC 1 cut(s) 327
SchI GAGTC 1 cut(s) 77
SduI GDGCHC 1 cut(s) 27
SfaNI GCATC 1 cut(s) 240
SfuI TTCGAA 1 cut(s) 420
Sse9I AATT 1 cut(s) 108
SsiI CCGC 2 cut(s) 229, 404
SspI AATATT 2 cut(s) 76, 127
SspMI CTAG 1 cut(s) 444
SstI GAGCTC 1 cut(s) 27
TaiI ACGT 1 cut(s) 434
TaqI TCGA 2 cut(s) 98, 420
TaqII GACCGA 1 cut(s) 389
TasI AATT 1 cut(s) 108
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TseFI GTSAC 2 cut(s) 318, 347
Tsp45I GTSAC 2 cut(s) 318, 347
XspI CTAG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.