Rw6G033910

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000480
Physical Location & Seq
Reverse (-)
58476076 .. 58479030
2955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G033910.1

Sequence Viewer

Length: 609 bp
ATGGTTCGCATCAAGCACACTGATTCAGCAAAAATCCAAAAGAAAACTCCGGAGAGAGTTGAGGAAACCGTGCCATGGAAGCCGACGGATCGCGACATCGAAAAGTACATCGAGGAGTACTCCATACCGAAATTTGTTAAGCTTTCACCTGTCCCTACGGTCGCCGATATTCACACTGGCGAAAATGTGCTTGTTGGTGCCTTAATTTTATCCCCTCAGCACCTGAGATTTATCAGGTTTCCAATACACCCCGTCTTCCAACTCATGTGGGGTATGCTCGGTTTGCACCCACCTCAACTTAATCAGCACGCTTATCTGCTTCTGTCTGCATTTTTAATCATGGGTTGGAAGTGGGGGGTCTCCCTGGGACTTTCGGATTTTCTTTATCTATACAATTGTGCCAGAATTGGCAAACTCAGATATTTTAACTTTACTCCATACCTGAAGATGAAGGTGTTCGGAGGTTTATCCAATAACTATCGAGGATGGAAATCCAGGGCCTTGTTGATCACTGGTGGATGGCGCTCCCCTGAGCTGGATCTTTTGCCCCCGAGAGCATTCGCAGACGACCTTGGTACGCATCTTAACGCCTTTTCCCCCTGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

23.19

Weight (kDa)

9.54

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AccII CGCG 1 cut(s) 93
AccIII TCCGGA 1 cut(s) 49
AclWI GGATC 2 cut(s) 96, 546
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 464
AfaI GTAC 4 cut(s) 107, 119, 577, 604
AfiI CCNNNNNNNGG 2 cut(s) 75, 535
AjnI CCWGG 2 cut(s) 363, 494
AluBI AGCT 2 cut(s) 142, 535
AluI AGCT 2 cut(s) 142, 535
Alw26I GTCTC 1 cut(s) 364
AlwI GGATC 2 cut(s) 96, 546
AlwNI CAGNNNCTG 1 cut(s) 223
Ama87I CYCGRG 1 cut(s) 550
Aor13HI TCCGGA 1 cut(s) 49
AoxI GGCC 1 cut(s) 498
ApoI RAATTY 1 cut(s) 131
Asp700I GAANNNNTTC 1 cut(s) 455
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 1 cut(s) 498
AsuHPI GGTGA 1 cut(s) 138
AvaI CYCGRG 1 cut(s) 550
BanI GGYRCC 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 247
BbvCI CCTCAGC 1 cut(s) 216
BccI CCATC 2 cut(s) 480, 513
BciT130I CCWGG 2 cut(s) 365, 496
BclI TGATCA 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 364
BfoI RGCGCY 1 cut(s) 526
BmcAI AGTACT 1 cut(s) 119
Bme1390I CCNGG 2 cut(s) 365, 496
BmeT110I CYCGRG 1 cut(s) 550
BmgT120I GGNCC 1 cut(s) 498
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 2 cut(s) 365, 496
BmsI GCATC 2 cut(s) 18, 589
BpiI GAAGAC 1 cut(s) 247
BplI GAGNNNNNCTC 2 cut(s) 104, 136
Bpu10I CCTNAGC 2 cut(s) 216, 531
BsaBI GATNNNNATC 1 cut(s) 490
BsaI GGTCTC 1 cut(s) 364
BsaJI CCNNGG 5 cut(s) 74, 363, 364, 495, 571
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 535
Bse1I ACTGG 2 cut(s) 181, 517
Bse8I GATNNNNATC 1 cut(s) 490
BseAI TCCGGA 1 cut(s) 49
BseBI CCWGG 2 cut(s) 365, 496
BseDI CCNNGG 5 cut(s) 74, 363, 364, 495, 571
BseGI GGATG 2 cut(s) 491, 524
BseJI GATNNNNATC 1 cut(s) 490
BseLI CCNNNNNNNGG 2 cut(s) 75, 535
BseMII CTCAG 4 cut(s) 215, 230, 430, 522
BseNI ACTGG 2 cut(s) 181, 517
BseRI GAGGAG 1 cut(s) 128
Bsh1236I CGCG 1 cut(s) 93
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 500
BshNI GGYRCC 1 cut(s) 197
BsiEI CGRYCG 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 550
BsiSI CCGG 1 cut(s) 50
BslFI GGGAC 2 cut(s) 137, 381
BslI CCNNNNNNNGG 2 cut(s) 75, 535
BsmAI GTCTC 1 cut(s) 364
BsmFI GGGAC 2 cut(s) 137, 381
BsmI GAATGC 1 cut(s) 557
BsnI GGCC 1 cut(s) 500
Bso31I GGTCTC 1 cut(s) 364
BsoBI CYCGRG 1 cut(s) 550
Bsp13I TCCGGA 1 cut(s) 49
Bsp143I GATC 3 cut(s) 88, 507, 538
Bsp19I CCATGG 1 cut(s) 74
Bsp68I TCGCGA 1 cut(s) 93
BspANI GGCC 1 cut(s) 500
BspCNI CTCAG 4 cut(s) 216, 229, 429, 523
BspEI TCCGGA 1 cut(s) 49
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 199
BspPI GGATC 2 cut(s) 96, 546
BspT107I GGYRCC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 364
BsrI ACTGG 2 cut(s) 181, 517
BssECI CCNNGG 5 cut(s) 74, 363, 364, 495, 571
BssMI GATC 3 cut(s) 88, 507, 538
BssT1I CCWWGG 2 cut(s) 74, 571
Bst2UI CCWGG 2 cut(s) 365, 496
Bst4CI ACNGT 2 cut(s) 70, 160
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 4 cut(s) 216, 224, 416, 531
BstDSI CCRYGG 1 cut(s) 74
BstF5I GGATG 2 cut(s) 491, 524
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 526
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 3 cut(s) 91, 510, 541
BstMAI GTCTC 1 cut(s) 364
BstMBI GATC 3 cut(s) 88, 507, 538
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 2 cut(s) 79, 283
BstNI CCWGG 2 cut(s) 365, 496
BstSCI CCNGG 2 cut(s) 363, 494
BstUI CGCG 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 247
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BsuRI GGCC 1 cut(s) 500
BtgI CCRYGG 1 cut(s) 74
BtsCI GGATG 2 cut(s) 491, 524
BtsIMutI CAGTG 3 cut(s) 18, 174, 510
BtuMI TCGCGA 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 309
CaiI CAGNNNCTG 1 cut(s) 223
CfoI GCGC 1 cut(s) 525
Cfr13I GGNCC 1 cut(s) 498
Csp6I GTAC 4 cut(s) 106, 118, 576, 603
CspCI CAANNNNNGTGG 2 cut(s) 248, 283
CviAII CATG 3 cut(s) 75, 265, 340
CviJI RGCY 4 cut(s) 82, 142, 500, 535
CviKI_1 RGCY 4 cut(s) 82, 142, 500, 535
CviQI GTAC 4 cut(s) 106, 118, 576, 603
DdeI CTNAG 4 cut(s) 216, 224, 416, 531
DpnI GATC 3 cut(s) 90, 509, 540
DpnII GATC 3 cut(s) 88, 507, 538
Eco130I CCWWGG 2 cut(s) 74, 571
Eco31I GGTCTC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 464
Eco88I CYCGRG 1 cut(s) 550
EcoO109I RGGNCCY 1 cut(s) 498
EcoRII CCWGG 2 cut(s) 363, 494
EcoT14I CCWWGG 2 cut(s) 74, 571
ErhI CCWWGG 2 cut(s) 74, 571
FaeI CATG 3 cut(s) 78, 268, 343
FaiI YATR 7 cut(s) 76, 125, 266, 275, 341, 391, 439
FaqI GGGAC 2 cut(s) 137, 381
FatI CATG 3 cut(s) 74, 264, 339
FbaI TGATCA 1 cut(s) 507
FokI GGATG 2 cut(s) 498, 531
GlaI GCGC 1 cut(s) 524
HaeII RGCGCY 1 cut(s) 526
HaeIII GGCC 1 cut(s) 500
HapII CCGG 1 cut(s) 50
HhaI GCGC 1 cut(s) 525
Hin1II CATG 3 cut(s) 78, 268, 343
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 1 cut(s) 23
HpaII CCGG 1 cut(s) 50
HphI GGTGA 1 cut(s) 138
Hpy188I TCNGA 3 cut(s) 376, 419, 461
Hpy188III TCNNGA 2 cut(s) 50, 92
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 445
HpyCH4III ACNGT 2 cut(s) 70, 160
HpyCH4V TGCA 2 cut(s) 286, 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 283
HpyF3I CTNAG 4 cut(s) 216, 224, 416, 531
Hsp92II CATG 3 cut(s) 78, 268, 343
HspAI GCGC 1 cut(s) 523
Kpn2I TCCGGA 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 507
Kzo9I GATC 3 cut(s) 88, 507, 538
LmnI GCTCC 1 cut(s) 530
LweI GCATC 2 cut(s) 18, 589
MalI GATC 3 cut(s) 90, 509, 540
MboI GATC 3 cut(s) 88, 507, 538
MboII GAAGA 2 cut(s) 247, 457
MfeI CAATTG 1 cut(s) 394
MflI RGATCY 1 cut(s) 538
MluCI AATT 4 cut(s) 131, 204, 394, 405
MmeI TCCRAC 2 cut(s) 283, 326
MnlI CCTC 6 cut(s) 55, 106, 225, 303, 455, 476
MroI TCCGGA 1 cut(s) 49
MroXI GAANNNNTTC 1 cut(s) 455
MseI TTAA 7 cut(s) 138, 203, 300, 335, 426, 585, 607
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 2 cut(s) 365, 496
MunI CAATTG 1 cut(s) 394
Mva1269I GAATGC 1 cut(s) 557
MvaI CCWGG 2 cut(s) 365, 496
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 79, 283
NcoI CCATGG 1 cut(s) 74
NdeII GATC 3 cut(s) 88, 507, 538
NlaIII CATG 3 cut(s) 78, 268, 343
NlaIV GGNNCC 1 cut(s) 199
NruI TCGCGA 1 cut(s) 93
PasI CCCWGGG 1 cut(s) 364
PctI GAATGC 1 cut(s) 557
PdmI GAANNNNTTC 1 cut(s) 455
PfeI GAWTC 1 cut(s) 23
Psp6I CCWGG 2 cut(s) 363, 494
PspGI CCWGG 2 cut(s) 363, 494
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 498
PstNI CAGNNNCTG 1 cut(s) 223
PsuI RGATCY 1 cut(s) 538
RruI TCGCGA 1 cut(s) 93
RsaI GTAC 4 cut(s) 107, 119, 577, 604
RsaNI GTAC 4 cut(s) 106, 118, 576, 603
SaqAI TTAA 7 cut(s) 138, 203, 300, 335, 426, 585, 607
Sau3AI GATC 3 cut(s) 88, 507, 538
Sau96I GGNCC 1 cut(s) 498
ScaI AGTACT 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 365, 496
SfaNI GCATC 2 cut(s) 18, 589
Sse9I AATT 4 cut(s) 131, 204, 394, 405
StyD4I CCNGG 2 cut(s) 363, 494
StyI CCWWGG 2 cut(s) 74, 571
TaaI ACNGT 2 cut(s) 70, 160
TaqI TCGA 3 cut(s) 99, 111, 481
TasI AATT 4 cut(s) 131, 204, 394, 405
TatI WGTACW 3 cut(s) 105, 117, 602
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 7 cut(s) 138, 203, 300, 335, 426, 585, 607
Tru9I TTAA 7 cut(s) 138, 203, 300, 335, 426, 585, 607
TscAI CASTG 3 cut(s) 25, 181, 517
TspDTI ATGAA 1 cut(s) 464
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 3 cut(s) 25, 181, 517
XapI RAATTY 1 cut(s) 131
XmnI GAANNNNTTC 1 cut(s) 455
ZrmI AGTACT 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.